View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3793_low_9 (Length: 410)
Name: NF3793_low_9
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3793_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Complemental strand, 49485336 - 49484957
Alignment:
| Q |
14 |
aagaatatggggacttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattcctttgaacacttttcttaattttatt |
113 |
Q |
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| T |
49485336 |
aagaaaatggggacttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattcctttgaacacttttcttaattttatt |
49485237 |
T |
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| Q |
114 |
ttactttcccctattctaactctggggttacttcatattatttatcacaggtatatgatgaagtgaagaaacaagtaatggatgcaatattggcaatggt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49485236 |
ttactttcccctattctaactctggggttacttcatattatttatcacaggtatatgatgaagtgaagaaacaagtaatggatgcaatattggcaatggt |
49485137 |
T |
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| Q |
214 |
attttctgttttccatatttatattgttttattaacaatttatttctcagttcagtataattatttatggaaacttgttaggattcacaagccaacagat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49485136 |
attttctgttttccatatttatattgttttattaacaatttatttctcagttcattataattatttatggaaacttgttaggattcacaagccaacagat |
49485037 |
T |
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| Q |
314 |
gctagactatgtttgtcaactaatctaatactggtgttacactttaattggnnnnnnntgttttcgctaagccttgattt |
393 |
Q |
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| T |
49485036 |
gctagactatgtttgtcaactaatctaatactggtgttacactttaattggaaaaaaatgttttcactaagccttgattt |
49484957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 132 - 267
Target Start/End: Complemental strand, 49701700 - 49701566
Alignment:
| Q |
132 |
actctggggttacttcatattatttatcacaggtatatgatgaagtgaagaaacaagtaatggatgcaatattggcaatggtattttctgttttccatat |
231 |
Q |
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| T |
49701700 |
actctgggattacttcactttatttatctcaggtatatgatgagatgcatagacaagtaatggatgcaatattagcaatggtattttctgttttccattt |
49701601 |
T |
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| Q |
232 |
ttatattgttttattaacaatttatttctcagttca |
267 |
Q |
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|||| || ||||| ||||||||||||||||||||| |
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| T |
49701600 |
ttatgtt-atttataaacaatttatttctcagttca |
49701566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 49701838 - 49701766
Alignment:
| Q |
22 |
ggggacttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattcctttgaa |
94 |
Q |
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| T |
49701838 |
ggggactttcttctcttgaagaaactggcttcttatccttctattacttggttggtgctgagattcctttgaa |
49701766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 49532028 - 49531962
Alignment:
| Q |
25 |
gacttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattccttt |
91 |
Q |
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| T |
49532028 |
gacttccttctcttgaagaaattggcttgttgtccttctatgacttggttggtgatgagatttcttt |
49531962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 354
Target Start/End: Complemental strand, 49531831 - 49531665
Alignment:
| Q |
186 |
aagtaatggatgcaatattggcaatggtattttctgttttccatatttatattgttttattaacaatttatttctcagttcagtataattatttatggaa |
285 |
Q |
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|||| |||||||||||||| || |||||||| ||||| |||| | ||| || ||| || | ||||||||||||||||||| |||||||||| || | | |
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| T |
49531831 |
aagtgatggatgcaatattagctatggtattccatgtttcccatttctatgttattt-ataatcaatttatttctcagttcattataattattgatagga |
49531733 |
T |
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| Q |
286 |
acttgttaggattcacaagccaacagat-gctagactatgtttgtcaactaatctaatactggtgttaca |
354 |
Q |
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| T |
49531732 |
acttgtttggattgacaaaccaagagatagttag-ctccgtttgtcaact-atctaatactggtgttaca |
49531665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 55071093 - 55071154
Alignment:
| Q |
26 |
acttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattc |
87 |
Q |
| |
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||||||||||||||||||||| |||||| ||||||| || ||| ||||| |||||||||||| |
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| T |
55071093 |
acttccttctcttgaagaaaccggcttcatatccttttaccacctggttagtgatgagattc |
55071154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 55066785 - 55066847
Alignment:
| Q |
28 |
ttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattcctt |
90 |
Q |
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| T |
55066785 |
ttccttctcttgaagaaaccagattcttatgcttttaccacctggttggtgatgagattcctt |
55066847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 49521025 - 49520984
Alignment:
| Q |
32 |
ttctcttgaagaaactggcttcttatccttctatcacttggt |
73 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
49521025 |
ttctcttgaagaaactgctttcttatccttctataacttggt |
49520984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 50240087 - 50240046
Alignment:
| Q |
163 |
ggtatatgatgaagtgaagaaacaagtaatggatgcaatatt |
204 |
Q |
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| T |
50240087 |
ggtatatgatgaattaaataaacaagtaatggatgcaatatt |
50240046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 49529389 - 49529302
Alignment:
| Q |
264 |
ttcagtataattatttatggaaacttgttaggattcacaagccaacagatgctagactatgtttgtcaactaatctaatactggtgtta |
352 |
Q |
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| T |
49529389 |
ttcattataattattgatgggagcttgtttggatttacaaaccaagagatagttaactttgtttgtcaact-atctaatactggtgtta |
49529302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 54150739 - 54150791
Alignment:
| Q |
32 |
ttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgaga |
84 |
Q |
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| T |
54150739 |
ttctcttgaagaaattggcttcttatccttttatgacttggttggtcatgaga |
54150791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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