View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3794_high_8 (Length: 421)
Name: NF3794_high_8
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3794_high_8 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 21 - 421
Target Start/End: Original strand, 26405234 - 26405635
Alignment:
| Q |
21 |
agcgtatcagacgagggattctgaaacaaaatccaaccaccagtcatcactcataaacaatgacgctctaattaagaaaatgtgtgacaataaaaactgg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26405234 |
agcgtatcagacgagggattctgaaacaaaatccaaccaccagtcatcactcataaacaataacgctctaattaataaaatgtgtgacaataaaaactgg |
26405333 |
T |
|
| Q |
121 |
agggttgtatactgatttcggttactgggcctctctacgacaatgacttcaagtttagcgcctaaaacaagaaccgtttaaaaagaacacgcggggaagc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26405334 |
agggttgtatactgatttcggttactgggcctctctacgacaatgacttcaagtttagcgcctaaaacaagaaccgtttaaaaagaacacgcggggaagc |
26405433 |
T |
|
| Q |
221 |
tgaatcagaagtaagaagtcttgcagattcgttatttnnnnnnnttgcagcttgccgactcttaaaataatatcttgtaatgttcatatgtagaatggca |
320 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26405434 |
tgaatcaaaagtaagaagtcttgcagattcgttatttaaaaaaattgcagcttgccgactcttaaaataatatcttgtaatgttcatatgtagaatggca |
26405533 |
T |
|
| Q |
321 |
agtgatataatgag-aaaaaatattacaacaattaaagtcacttaaaataatatgagaccggagggaagtggtcagaaaagaagtggtaaaattgtcgag |
419 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26405534 |
agtgatataatgagaaaaaaatattacaacaattaaagtcacttaaaataatatgagacctgagggaagtggtcagaaaagaagtggtaaaattgtcgag |
26405633 |
T |
|
| Q |
420 |
gc |
421 |
Q |
| |
|
|| |
|
|
| T |
26405634 |
gc |
26405635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 109 - 311
Target Start/End: Original strand, 24804159 - 24804362
Alignment:
| Q |
109 |
aataaaaactggagggttgtatactgatttcggttactgggcctctctacgacaatgacttcaagtttagcgcctaaaacaagaaccgtttaaaaagaac |
208 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
24804159 |
aataaaaatcggagggctgtatactgatttcagttacagggcatctctacgacaatgacttcaagtttagctgccaaaacaagaacagtttaaaaagaac |
24804258 |
T |
|
| Q |
209 |
acgcggggaagctgaatcagaagtaagaagtcttgcagattcgtt-atttnnnnnnnttgcagcttgccgactcttaaaataatatcttgtaatgttcat |
307 |
Q |
| |
|
| ||| | ||||| ||||||||||||||||||||||| ||| ||| ||| ||||||||||| |||| |||||| |||||||||| ||||||| |
|
|
| T |
24804259 |
atgcgagaaagctaaatcagaagtaagaagtcttgcatattagttaattaaaatatgttgcagcttgctgactattaaaagaatatcttgttatgttcag |
24804358 |
T |
|
| Q |
308 |
atgt |
311 |
Q |
| |
|
|||| |
|
|
| T |
24804359 |
atgt |
24804362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 24225974 - 24226103
Alignment:
| Q |
128 |
tatactgatttcggttactgggcctctctacgacaatgacttcaagtttagcgcctaaaacaagaaccgtttaaaaagaacacgcggggaagctgaatca |
227 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||||||||||||| | || ||||||||||| ||| ||||||||| | ||| ||||||||||| |
|
|
| T |
24225974 |
tatactgacttcggttacagggcctctctacaacaatgacttcaagtttatctcccaaaacaagaactatttgaaaagaacaagtgggaaagctgaatca |
24226073 |
T |
|
| Q |
228 |
gaagtaagaagtcttgcagattcgttattt |
257 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
24226074 |
gaagtaagaagtcttgcagattcgatattt |
24226103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 24804001 - 24804076
Alignment:
| Q |
33 |
gagggattctgaaacaaaatccaaccaccagtcatcactcataaacaatgacgctctaattaagaaaatgtgtgacaa |
110 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||||| |||| ||||||| || ||||||||||||||| | ||||||| |
|
|
| T |
24804001 |
gagggattctaatacaaaatccaaccaacagtcataactc--aaacaataacactctaattaagaaaaggagtgacaa |
24804076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 23774454 - 23774325
Alignment:
| Q |
128 |
tatactgatttcggttactgggcctctctacgacaatgacttcaagtttagcgcctaaaacaagaaccgtttaaaaagaacacgcggggaagctgaatca |
227 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||||||||||||| | || ||||||||||| ||| ||||||||| | ||| ||||||||||| |
|
|
| T |
23774454 |
tatactgacttcggttacagggcctctctacaacaatgacttcaagtttatctcccaaaacaagaactatttgaaaagaacaagtgggaaagctgaatca |
23774355 |
T |
|
| Q |
228 |
gaagtaagaagtcttgcagattcgttattt |
257 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
23774354 |
gaagtaagaagtcttgcagattcgatattt |
23774325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University