View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3794_low_1 (Length: 758)

Name: NF3794_low_1
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3794_low_1
NF3794_low_1
[»] scaffold0006 (3 HSPs)
scaffold0006 (130-304)||(73125-73299)
scaffold0006 (550-597)||(73712-73760)
scaffold0006 (338-371)||(73376-73409)
[»] chr8 (4 HSPs)
chr8 (196-304)||(40374635-40374741)
chr8 (635-698)||(40375232-40375295)
chr8 (637-700)||(42984348-42984411)
chr8 (338-371)||(40374818-40374851)
[»] chr7 (3 HSPs)
chr7 (632-707)||(12923858-12923933)
chr7 (655-705)||(12912112-12912162)
chr7 (538-597)||(42030503-42030563)
[»] chr2 (1 HSPs)
chr2 (130-207)||(13390651-13390731)
[»] chr4 (1 HSPs)
chr4 (145-211)||(25612343-25612407)


Alignment Details
Target: scaffold0006 (Bit Score: 107; Significance: 3e-53; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 130 - 304
Target Start/End: Original strand, 73125 - 73299
Alignment:
Q  130 tcacttaaaatccagaaacacttgcagcttcaacaattcaacaagaatcccaaaaattcatatccttatttaacccaaaaataaatatata--agatgcc 227  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||  ||||||||||||| |||| ||||| |||  |||||||    
T  73125 tcacttaaaatccagaatcacttgcagcttcaacaattcaacaagaatgccaacaattcat--ccttatttaaccccaaaaaaaataaatatcagatgcc 73222  T
Q  228 tctaaatcaaacgttaccatttaccaatcacaacacaattaatagcattgaaagttatctctcaaagatgaaaaaga 304  Q
     |||||||||| |||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  73223 cctaaatcaaatgttaccatttacaaatcacaacacaattagtagcattaaaagttatctctcaaagatgaagaaga 73299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 597
Target Start/End: Original strand, 73712 - 73760
Alignment:
Q  550 ggggaggttaact-ggaaaaatccaaacagcattaaaaaactaatttca 597  Q
    |||||||| |||| ||||||||||||||||||||||||||||| |||||    
T  73712 ggggaggtaaactaggaaaaatccaaacagcattaaaaaactattttca 73760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 371
Target Start/End: Original strand, 73376 - 73409
Alignment:
Q  338 tagatccaaatggttaattcctaaatttctctca 371  Q
    ||||||||||||||||||||||| ||||||||||    
T  73376 tagatccaaatggttaattcctagatttctctca 73409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 9e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 196 - 304
Target Start/End: Original strand, 40374635 - 40374741
Alignment:
Q  196 tatttaacccaaaaataaatatataagatgcctctaaatcaaacgttaccatttaccaatcacaacacaattaatagcattgaaagttatctctcaaaga 295  Q
    ||||||||||||||| ||||||   ||||||| |||||||||| |||||||||||  |||||||||||||||||||||||| ||||||||||||||||||    
T  40374635 tatttaacccaaaaaaaaatatc--agatgcccctaaatcaaatgttaccatttaggaatcacaacacaattaatagcattaaaagttatctctcaaaga 40374732  T
Q  296 tgaaaaaga 304  Q
    |||| ||||    
T  40374733 tgaagaaga 40374741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 698
Target Start/End: Original strand, 40375232 - 40375295
Alignment:
Q  635 gccagctgtccaggaaaatagccctttcccatggtgggaaagaaaattccattcccaggctaaa 698  Q
    |||| |||||| || |||| || |||||||||||||||||||||   |||||||||||||||||    
T  40375232 gccacctgtcctgggaaatggcactttcccatggtgggaaagaagtatccattcccaggctaaa 40375295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 700
Target Start/End: Complemental strand, 42984411 - 42984348
Alignment:
Q  637 cagctgtccaggaaaatagccctttcccatggtgggaaagaaaattccattcccaggctaaact 700  Q
    |||||||| |||||||| || |||||||||||||||||| ||  ||| ||||||| ||||||||    
T  42984411 cagctgtcaaggaaaatggctctttcccatggtgggaaaaaactttctattcccatgctaaact 42984348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 371
Target Start/End: Original strand, 40374818 - 40374851
Alignment:
Q  338 tagatccaaatggttaattcctaaatttctctca 371  Q
    ||||||||||||||||||||||| ||||||||||    
T  40374818 tagatccaaatggttaattcctagatttctctca 40374851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 632 - 707
Target Start/End: Original strand, 12923858 - 12923933
Alignment:
Q  632 actgccagctgtccaggaaaatagccctttcccatggtgggaaagaaaattccattcccaggctaaacttaaccaa 707  Q
    ||||||| |||||| || | || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12923858 actgccacctgtcctgggatatggccctttcccatggtgggaaagaaaattccattcccaggctaaacttaaccaa 12923933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 655 - 705
Target Start/End: Complemental strand, 12912162 - 12912112
Alignment:
Q  655 gccctttcccatggtgggaaagaaaattccattcccaggctaaacttaacc 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12912162 gccctttcccatggtgggaaagaaaattccattcccaggctaaacttaacc 12912112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 597
Target Start/End: Complemental strand, 42030563 - 42030503
Alignment:
Q  538 cattcgtaaatgggggaggttaactgg-aaaaatccaaacagcattaaaaaactaatttca 597  Q
    |||| ||||||||||||| | |||| | ||||||||||| |||||||||||||||||||||    
T  42030563 cattagtaaatgggggagataaactagcaaaaatccaaaaagcattaaaaaactaatttca 42030503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 13390651 - 13390731
Alignment:
Q  130 tcacttaaaatccagaaacacttgcagcttcaa-----caattcaacaagaatcccaaaaattcatatccttatttaacccaa 207  Q
    ||||||||||||||||| |||||| ||||||||     ||||||||||||||| |||| |||||  |||||||||||||||||    
T  13390651 tcacttaaaatccagaatcacttgtagcttcaacaattcaattcaacaagaatgccaacaattc--atccttatttaacccaa 13390731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 25612407 - 25612343
Alignment:
Q  145 aaacacttgcagcttcaacaattcaacaagaatcccaaaaattcatatccttatttaacccaaaaat 211  Q
    ||||||||| | ||||||||| |||||||||| |||| ||||||||  |||||||||||||| ||||    
T  25612407 aaacacttgtaccttcaacaactcaacaagaaacccataaattcat--ccttatttaacccataaat 25612343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University