View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3794_low_10 (Length: 313)
Name: NF3794_low_10
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3794_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 295
Target Start/End: Original strand, 12945427 - 12945711
Alignment:
| Q |
4 |
gcaggaacaccaattgttcttataatttgttctcttgtatttgcaaagttatcaatttgtgcgtcgaagtttattcgaccaccctattaataacatgaaa |
103 |
Q |
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| T |
12945427 |
gcaggaacaccaattgttctgataatttgttctcttgtatttgcaaagttatcaatttgtgcatcgaagtttattcgaccacccta-------catgaaa |
12945519 |
T |
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| Q |
104 |
gattcaacctatcaccagaattgaaggaaaaactatataaaaatattggaacaaaaacttacaaagagaaatcctgtcttattgaggattccgcctccac |
203 |
Q |
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| T |
12945520 |
gattcaacctattaccataattaaaggaaaaactataaagcaatattggaacaaaaacttacaaagagaaatcctgtcttattgaggattccgcctccac |
12945619 |
T |
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| Q |
204 |
ccgaggcataattaacaccctttagaaccattggttcacctgtagtggtagccatgtaaggtggagtaagaccaataccaagttcttgatct |
295 |
Q |
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| T |
12945620 |
ccgaggcataattaacaccctttagaaccattggttcacctgtagtggtagccatgtaaggtggagtaagaccaataccaagttcttgatct |
12945711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 12940216 - 12940310
Alignment:
| Q |
8 |
gaacaccaattgttcttataatttgttctcttgtatttgcaaagttatcaatttgtgcgtcgaagtttattcgaccaccctattaataacatgaa |
102 |
Q |
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| T |
12940216 |
gaacaccaattttgctaatgatatcttctcttgtatttgcaaagttatcaatttgtgcatcaaagttgattcgaccaacctattaatcacatgaa |
12940310 |
T |
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