View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3794_low_12 (Length: 286)
Name: NF3794_low_12
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3794_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 54575619 - 54575888
Alignment:
| Q |
1 |
tttcagcttattttcataagctctcttaagtagttgtagaaagaatgaagagactaattaactttgttttatcttttgttacagaaaaagtttatacata |
100 |
Q |
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| T |
54575619 |
tttcagcttattttcataagctctcttaagtagttgtagaaagaatgaagagactaattaactttgttttatcttttgttatagaaaaagtttatacata |
54575718 |
T |
|
| Q |
101 |
atgcttacgttgtataagctgcaagttaagttaactattttcaacctggaagctgcaaggcctagaaaaagaggaaagtgaaaaggagaaaaccttgcaa |
200 |
Q |
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| T |
54575719 |
atgcttacgttgtataagctgcaagttaagttaactattttcaacctggaagctgcaaggcctagaaaaagaggaaagggaaaaggagaaaaccttgcaa |
54575818 |
T |
|
| Q |
201 |
ggcctggactcaatgactatgtaaccgttcctgcgaatgttaccagcctgtagagggtaggtttgtggat |
270 |
Q |
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| T |
54575819 |
ggcctggactcaatgacgatgtaaccgttcctgcgaatgttaccagcctgtagagggtaggtttttggat |
54575888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 54581586 - 54581677
Alignment:
| Q |
173 |
ggaaagtgaaaaggagaaaaccttgcaaggcctggactcaatgactatgtaaccgttcctgcgaatgttaccagcctgtagagggtaggttt |
264 |
Q |
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| T |
54581586 |
ggaaagggaaaaggagaaaaccttgcaaggcctggacttgatgacgatgtaaccattcttgcgaatagtaccggcctgttgaggataggttt |
54581677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 50998529 - 50998491
Alignment:
| Q |
63 |
tttgttttatcttttgttacagaaaaagtttatacataa |
101 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||| |
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| T |
50998529 |
tttgttttatcttttgttacagaaatagcttatacataa |
50998491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 14482181 - 14482141
Alignment:
| Q |
61 |
actttgttttatcttttgttacagaaaaagtttatacataa |
101 |
Q |
| |
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||||| ||||||||||||||| ||||| ||||||||||||| |
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| T |
14482181 |
actttattttatcttttgttatagaaatagtttatacataa |
14482141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 28613622 - 28613666
Alignment:
| Q |
58 |
ttaactttgttttatcttttgttacagaaaaagtttatacataat |
102 |
Q |
| |
|
|||||||||||||||||||||||| | ||| || ||||||||||| |
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| T |
28613622 |
ttaactttgttttatcttttgttataaaaatagcttatacataat |
28613666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 8349752 - 8349792
Alignment:
| Q |
58 |
ttaactttgttttatcttttgttacagaaaaagtttataca |
98 |
Q |
| |
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|||||||| ||||||||||||||| ||||| |||||||||| |
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|
| T |
8349752 |
ttaactttattttatcttttgttagagaaatagtttataca |
8349792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 33787836 - 33787876
Alignment:
| Q |
61 |
actttgttttatcttttgttacagaaaaagtttatacataa |
101 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||||||| |
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|
| T |
33787836 |
actttgttttatattttgttatagaaatagtttatacataa |
33787876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 36638723 - 36638687
Alignment:
| Q |
63 |
tttgttttatcttttgttacagaaaaagtttatacat |
99 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
36638723 |
tttgttttatcttttgttatagaaatagtttatacat |
36638687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 37063165 - 37063205
Alignment:
| Q |
61 |
actttgttttatcttttgttacagaaaaagtttatacataa |
101 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||||||||||| |
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| T |
37063165 |
actttattttatcttttgttatagaaatagtttatacataa |
37063205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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