View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3794_low_14 (Length: 269)
Name: NF3794_low_14
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3794_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 12945401 - 12945185
Alignment:
| Q |
1 |
ctcttcacagtagcacttggctcaaatgatttccttgataactatttagcacgtacaaagcaagagagagagttgttacctctaaacaaatttgtcgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
12945401 |
ctcttcacagtagcacttggctcaaatgatttccttgataactatttagcacgtacaaagcaagagagagagttgttacctccagacaaatttgtcgaga |
12945302 |
T |
|
| Q |
101 |
caatgatatcaaaactctgggtacaactcacggtaatatttccaagaccctataacattttcttacaagactgttattattttttaacattttcatacct |
200 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| || |||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||| | |
|
|
| T |
12945301 |
caatgatatcaaaactcagagtacaactcacggtaattttgccaa-accctataacattttctatcaagactattgttattttttaaaattttcatactt |
12945203 |
T |
|
| Q |
201 |
gaagttttaaaaagctca |
218 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
12945202 |
gaagttttaaaaaactca |
12945185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12940186 - 12940135
Alignment:
| Q |
1 |
ctcttcacagtagcacttggctcaaatgatttccttgataactatttagcac |
52 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
12940186 |
ctctttacagtagcatttggctcaaacgattttcttgataactatttggcac |
12940135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University