View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3794_low_18 (Length: 250)
Name: NF3794_low_18
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3794_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 18244180 - 18243942
Alignment:
| Q |
1 |
aatcaaaacaatcacaattttcaaattttctcaaattcatcagcagcatcagcaacacatcataatgcagaaaacagtgaaaaagttctgattgatgaca |
100 |
Q |
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| T |
18244180 |
aatcaaaacaatcacaattttcacattttctcaaattcatcagcagcatcagcaacacatcataatgcagaaaacagtgaaaaagttctggttgatgaca |
18244081 |
T |
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| Q |
101 |
ccccagatgctgttgaaactcctcaattttttgacttccttggagtaggtgctacatgatcttcaaataagtccnnnnnnngctgcagaattttccacgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18244080 |
ccccagatgctgttgaaactcctcaattttttgacttccttggagtaggtgctacatgatcttcaaataagtccaaaaaaagctgcagaattttccacgg |
18243981 |
T |
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| Q |
201 |
aagttgctcaatataggtgtggtccaacaagtcattcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
18243980 |
aagttgctcaatataggtgtggtccaacaagtcattcat |
18243942 |
T |
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