View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3794_low_2 (Length: 592)

Name: NF3794_low_2
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3794_low_2
NF3794_low_2
[»] chr1 (33 HSPs)
chr1 (19-368)||(50508934-50509288)
chr1 (370-516)||(42267304-42267448)
chr1 (370-514)||(9443573-9443715)
chr1 (372-489)||(10303926-10304043)
chr1 (449-512)||(34849091-34849152)
chr1 (376-516)||(6367569-6367707)
chr1 (392-513)||(34850351-34850470)
chr1 (376-516)||(17662133-17662271)
chr1 (460-516)||(37578475-37578529)
chr1 (454-516)||(13245935-13245995)
chr1 (459-516)||(1103551-1103606)
chr1 (459-516)||(1841549-1841604)
chr1 (459-516)||(14879061-14879116)
chr1 (395-516)||(22103789-22103908)
chr1 (376-516)||(4960547-4960685)
chr1 (392-489)||(25647907-25648004)
chr1 (376-489)||(36694556-36694669)
chr1 (376-489)||(36710657-36710770)
chr1 (459-515)||(40210654-40210708)
chr1 (376-516)||(46163037-46163175)
chr1 (441-516)||(21444666-21444739)
chr1 (454-533)||(27999117-27999194)
chr1 (376-480)||(40435352-40435456)
chr1 (454-489)||(10304163-10304198)
chr1 (459-516)||(13914350-13914405)
chr1 (455-489)||(16970843-16970877)
chr1 (459-516)||(24009824-24009879)
chr1 (459-516)||(32917350-32917405)
chr1 (459-516)||(42248563-42248618)
chr1 (392-489)||(26024446-26024543)
chr1 (423-476)||(32927312-32927365)
chr1 (392-489)||(41098756-41098853)
chr1 (449-516)||(34464732-34464797)
[»] chr6 (13 HSPs)
chr6 (19-307)||(10782614-10782900)
chr6 (377-488)||(10782417-10782528)
chr6 (376-480)||(26463186-26463290)
chr6 (376-516)||(21627996-21628134)
chr6 (377-473)||(1215015-1215111)
chr6 (441-516)||(1215149-1215222)
chr6 (449-516)||(24210611-24210676)
chr6 (449-516)||(33647043-33647108)
chr6 (459-516)||(3059347-3059402)
chr6 (459-516)||(12080726-12080781)
chr6 (459-516)||(33517624-33517679)
chr6 (401-489)||(30725791-30725879)
chr6 (444-480)||(31406953-31406989)
[»] chr4 (24 HSPs)
chr4 (441-580)||(52298099-52298231)
chr4 (395-479)||(52298304-52298388)
chr4 (370-512)||(41583518-41583658)
chr4 (370-512)||(40387468-40387608)
chr4 (459-516)||(35028281-35028336)
chr4 (383-516)||(53701826-53701957)
chr4 (376-516)||(14801743-14801881)
chr4 (376-516)||(52909260-52909398)
chr4 (370-438)||(52295532-52295600)
chr4 (398-489)||(43155804-43155895)
chr4 (463-516)||(17356205-17356256)
chr4 (459-516)||(34765663-34765718)
chr4 (459-516)||(37976436-37976491)
chr4 (448-513)||(48528551-48528614)
chr4 (494-580)||(29321128-29321210)
chr4 (376-489)||(54087003-54087116)
chr4 (460-519)||(10781764-10781821)
chr4 (460-519)||(24349765-24349822)
chr4 (459-516)||(15507956-15508011)
chr4 (448-513)||(48529862-48529925)
chr4 (459-508)||(50418928-50418975)
chr4 (460-516)||(16605693-16605747)
chr4 (392-489)||(27934555-27934652)
chr4 (437-516)||(7280389-7280466)
[»] chr2 (21 HSPs)
chr2 (372-516)||(2940938-2941081)
chr2 (370-485)||(6846785-6846900)
chr2 (392-516)||(10840499-10840621)
chr2 (372-516)||(11721373-11721515)
chr2 (377-480)||(6848051-6848154)
chr2 (370-480)||(11349522-11349632)
chr2 (370-473)||(10841700-10841803)
chr2 (370-507)||(17266399-17266534)
chr2 (372-516)||(11689544-11689686)
chr2 (364-516)||(15848083-15848233)
chr2 (370-489)||(16105553-16105672)
chr2 (459-516)||(36755183-36755238)
chr2 (370-489)||(17266638-17266759)
chr2 (442-488)||(11347496-11347542)
chr2 (459-516)||(37895630-37895685)
chr2 (383-516)||(44714044-44714175)
chr2 (376-480)||(3555257-3555361)
chr2 (377-516)||(36382169-36382306)
chr2 (370-477)||(39935457-39935563)
chr2 (459-516)||(39423605-39423660)
chr2 (449-485)||(3653392-3653428)
[»] chr5 (20 HSPs)
chr5 (370-480)||(15645029-15645139)
chr5 (370-516)||(12904755-12904899)
chr5 (370-476)||(5326058-5326164)
chr5 (376-516)||(19892591-19892729)
chr5 (370-480)||(42067841-42067951)
chr5 (392-516)||(13962887-13963009)
chr5 (376-516)||(39453307-39453445)
chr5 (370-489)||(14848740-14848859)
chr5 (434-516)||(29646645-29646725)
chr5 (376-506)||(35920477-35920605)
chr5 (459-516)||(32242332-32242387)
chr5 (383-489)||(38475307-38475413)
chr5 (376-516)||(5993896-5994034)
chr5 (376-489)||(16157163-16157276)
chr5 (376-516)||(35512155-35512293)
chr5 (458-516)||(10684028-10684084)
chr5 (459-516)||(8322494-8322549)
chr5 (459-516)||(11047527-11047582)
chr5 (376-424)||(18247449-18247497)
chr5 (536-580)||(40150037-40150081)
[»] chr3 (28 HSPs)
chr3 (376-516)||(33689662-33689800)
chr3 (371-485)||(30380848-30380962)
chr3 (370-480)||(25108412-25108522)
chr3 (376-507)||(40033748-40033877)
chr3 (370-512)||(44654790-44654930)
chr3 (370-480)||(1079538-1079648)
chr3 (459-516)||(26463881-26463936)
chr3 (376-516)||(9294241-9294379)
chr3 (444-516)||(41988037-41988107)
chr3 (370-489)||(20704431-20704550)
chr3 (370-516)||(20704610-20704754)
chr3 (434-516)||(43384348-43384428)
chr3 (454-519)||(39399372-39399435)
chr3 (376-516)||(40506070-40506209)
chr3 (454-519)||(54317911-54317974)
chr3 (376-516)||(23458262-23458400)
chr3 (367-419)||(23276361-23276413)
chr3 (451-487)||(42854517-42854553)
chr3 (459-489)||(19741200-19741230)
chr3 (441-479)||(21783813-21783851)
chr3 (459-516)||(33156277-33156332)
chr3 (459-516)||(40758234-40758289)
chr3 (459-512)||(51994173-51994224)
chr3 (392-489)||(36314575-36314672)
chr3 (376-489)||(46474822-46474935)
chr3 (448-481)||(47857561-47857594)
chr3 (392-489)||(48322654-48322751)
chr3 (376-480)||(32431509-32431613)
[»] chr7 (22 HSPs)
chr7 (371-489)||(11400277-11400394)
chr7 (370-488)||(15714601-15714719)
chr7 (376-516)||(28469291-28469429)
chr7 (459-516)||(32053426-32053481)
chr7 (392-508)||(6571036-6571150)
chr7 (371-488)||(7356507-7356623)
chr7 (371-476)||(17204890-17204995)
chr7 (370-489)||(20563735-20563854)
chr7 (376-510)||(45010893-45011025)
chr7 (459-516)||(2640461-2640516)
chr7 (376-476)||(20426651-20426751)
chr7 (370-480)||(12229389-12229498)
chr7 (394-488)||(13311342-13311436)
chr7 (459-516)||(23181277-23181332)
chr7 (455-516)||(38643636-38643695)
chr7 (459-516)||(40379859-40379914)
chr7 (459-516)||(42731509-42731564)
chr7 (443-488)||(13311146-13311191)
chr7 (370-447)||(23608809-23608886)
chr7 (459-511)||(27396883-27396933)
chr7 (398-479)||(32687426-32687507)
chr7 (536-580)||(22245539-22245583)
[»] scaffold0220 (1 HSPs)
scaffold0220 (370-521)||(23232-23381)
[»] chr8 (19 HSPs)
chr8 (434-516)||(24085839-24085919)
chr8 (366-514)||(9499883-9500028)
chr8 (371-516)||(22890277-22890420)
chr8 (376-516)||(4405943-4406081)
chr8 (376-516)||(13186067-13186205)
chr8 (376-516)||(16388809-16388947)
chr8 (376-516)||(39071683-39071821)
chr8 (494-580)||(9337149-9337231)
chr8 (401-516)||(36928508-36928621)
chr8 (454-514)||(2693802-2693860)
chr8 (392-489)||(23663822-23663919)
chr8 (461-516)||(31608796-31608849)
chr8 (398-508)||(23698535-23698643)
chr8 (427-486)||(31872946-31873005)
chr8 (434-516)||(35756647-35756727)
chr8 (398-489)||(36325263-36325354)
chr8 (370-480)||(2535867-2535977)
chr8 (395-488)||(20050109-20050202)
chr8 (392-488)||(11674718-11674814)
[»] scaffold0005 (1 HSPs)
scaffold0005 (376-516)||(37846-37984)
[»] scaffold0031 (1 HSPs)
scaffold0031 (459-516)||(69055-69110)
[»] scaffold0027 (1 HSPs)
scaffold0027 (434-514)||(14076-14153)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-132; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 50508934 - 50509288
Alignment:
Q  19 caatattgtttcaggcttccagatccgaaaagtataaagctgcaagtaattattattccaccacatatactgtggatgagcttatgcaatcaaagagtat 118  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50508934 caatattgtttcaggcttcaagatctgaaaagtacaaagctgcaagtaattattattccaccacatatactgtggatgagcttatgcaatcaaagagtat 50509033  T
Q  119 gaagaaggaatcatgctctaagcttaagtgggactcaggcactagacaatatgtggatatgctagttgatgctatcaaaaaagatcaggcacagaaagcc 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  50509034 gaagaaggaatcatgctctaaggttaagtgggactcaggcactaaacaatttatggatatgctagttgatgctatcaaaaaagatcaggcacagaaagcc 50509133  T
Q  219 --nnnnnnnnggaagggccttc-----acctacagttaaaaaagaagaggtaaatctattttgnnnnnnnattctaaaaataattcaattcatatagtat 311  Q
              ||||||||||||      |||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  50509134 aaaaaaaaaaggaagggccttctcctatcctacagtgaaaaaagaagaggtaaatctattttg--tttttattctaaaaataattcaattcatatagtat 50509231  T
Q  312 tttgaaaatgtttttaaaagatgtagcaaacaaaatgtacctttagtatttatgtaa 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50509232 tttgaaaatgtttttaaaagatgtagcaaacaaaatgtacctttagtatttatgtaa 50509288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 370 - 516
Target Start/End: Original strand, 42267304 - 42267448
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||  || ||||||||||||||| ||||||| |||||  ||| |||  || ||||||||| ||||||||  ||||||||||||||||    
T  42267304 gcttttatatgtgtttattccctgcaaataggggtcatttaaaaattggtccctgtattctttaatcctgacaatttgtcctgccaaaatttaatcattt 42267403  T
Q  470 aaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    || |||||||| |||||||  | ||||||||||  ||||||||||||    
T  42267404 aatatttcgtctctctccc--cacttaatcactaccacgtcactaat 42267448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 514
Target Start/End: Original strand, 9443573 - 9443715
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||  ||  |||||||||||||| |||||||  |||| |||| |||  || |||||| |||||||||||  ||||||||||||||||    
T  9443573 gcttttatatgtgtttagtccttgcaaataggggtcatttaaaaaatggtctctgtattccttaatcctggcattttgtcctcccaaaatttaatcattt 9443672  T
Q  470 aaaatttcgtcactctcccctcgcttaatcactgtcacgtcacta 514  Q
    ||||||| ||  | |||||| | |||||||| ||||| |||||||    
T  9443673 aaaatttggt--ccctccccccacttaatcattgtcaagtcacta 9443715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 489
Target Start/End: Original strand, 10303926 - 10304043
Alignment:
Q  372 ttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaa 471  Q
    ||||||||||||||  |||||||||||||| ||| |||||||  || | | || ||| ||| |||||| || |||| |||| ||||||||||||||||||    
T  10303926 ttttatatgtgtttggtctctgcaaataggagtcatttaaaaaatgatctatgtattcgttaatcctggcaatttgcccttccaaaatttaatcatttaa 10304025  T
Q  472 aatttcgtcactctcccc 489  Q
    ||||||||| ||||||||    
T  10304026 aatttcgtccctctcccc 10304043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 512
Target Start/End: Original strand, 34849091 - 34849152
Alignment:
Q  449 ccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcac 512  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||||||||||| ||||||||    
T  34849091 ccttgcaaaatttaatcatttaaaatttcgtccctctcccct--cttaatcactgccacgtcac 34849152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 6367569 - 6367707
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||||||||||| |||||  ||| | | | | |||||| || |||  |||||||   |||||||||||||||||    
T  6367569 atatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttacccttgcattgtttaatcatttaaaatt 6367668  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | ||||||||||| ||||||||||||    
T  6367669 tcgtccctctccc--cacttaatcactgccacgtcactaat 6367707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 392 - 513
Target Start/End: Complemental strand, 34850470 - 34850351
Alignment:
Q  392 tgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctc 491  Q
    ||||| |||||||||||||||| |||||  ||| ||| | | |||||  ||  ||  ||||||||||||||||||||||||||||| || |||||||  |    
T  34850470 tgcaattaggggtcgtttaaaaattggtccctgtattcgctaatccttgcaaattacccttgcaaaatttaatcatttaaaatttcatccctctccc--c 34850373  T
Q  492 gcttaatcactgtcacgtcact 513  Q
     ||||||||||| |||||||||    
T  34850372 acttaatcactgccacgtcact 34850351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 17662271 - 17662133
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| | |||||||||||||| |||||| ||  | | ||| |||||| || |||  |||||||   |||||||||||||||||    
T  17662271 atatgtatttcatccttgcaatttggggtcgtttaaaaattggttcctttaatcgttaatcctggcaatttacccttgcattgtttaatcatttaaaatt 17662172  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||| ||  | ||||||||||| ||||||||||||    
T  17662171 tcgtccctcttcc--cacttaatcactgccacgtcactaat 17662133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 516
Target Start/End: Complemental strand, 37578529 - 37578475
Alignment:
Q  460 ttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||||||||||  | ||||||||||| ||||||||||||    
T  37578529 ttaatcatttaaaatttcgtcactctccc--cacttaatcactgccacgtcactaat 37578475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 454 - 516
Target Start/End: Original strand, 13245935 - 13245995
Alignment:
Q  454 caaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||||||| ||||||||| ||| |||||||  | ||||||||||||||||||||||||    
T  13245935 caaaatttaatcacttaaaattttgtccctctccc--cacttaatcactgtcacgtcactaat 13245995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 1103551 - 1103606
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | |||||||||||||| |||||||||    
T  1103551 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgtcatgtcactaat 1103606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 1841549 - 1841604
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||||||||||||||||||||||||  | ||||||||||| || |||||||||    
T  1841549 tttaatcatttaaaatttcgtcactctccc--cacttaatcactgccatgtcactaat 1841604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 14879061 - 14879116
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | |||||||||||||| |||||||||    
T  14879061 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgtcatgtcactaat 14879116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 516
Target Start/End: Complemental strand, 22103908 - 22103789
Alignment:
Q  395 aaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgct 494  Q
    ||||||||||| |||||||  ||||   || |||| || ||||||  |||||| |||  ||||||||||||| ||||||||||||| ||||| |  | ||    
T  22103908 aaataggggtcatttaaaaaatggtccatgtattttttaatcctgctattttgccctgtcaaaatttaatcacttaaaatttcgtccctctctc--cact 22103811  T
Q  495 taatcactgtcacgtcactaat 516  Q
    ||||||||| ||||||||||||    
T  22103810 taatcactgccacgtcactaat 22103789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 4960547 - 4960685
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||||||||||| ||| | | || ||| | | |||||  || |||  |||||||   |||||||||||||||||    
T  4960547 atatgtatttcatcattgcaattaggggtcgtttaaaaattgctctttgtattcgctaatccttgcaatttacccttgcattgtttaatcatttaaaatt 4960646  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||| ||  | ||||||||||| ||||||||||||    
T  4960647 tcgtccctcttcc--cacttaatcactgccacgtcactaat 4960685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 392 - 489
Target Start/End: Original strand, 25647907 - 25648004
Alignment:
Q  392 tgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccc 489  Q
    ||||| |||||||||||||||| |||||  ||| | | ||| |||||| || |||  || ||||  ||||||||||||||||||||||| ||||||||    
T  25647907 tgcaattaggggtcgtttaaaaattggtccctgtaatcgttaatcctggcaatttacccctgcattatttaatcatttaaaatttcgtccctctcccc 25648004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 376 - 489
Target Start/End: Complemental strand, 36694669 - 36694556
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||| || |||||||| ||||| |||| | | | | ||||||||| |||  |||||||   |||||||||||||||||    
T  36694669 atatgtatttcatccttgcaattaggtgttgtttaaaaattggtctctgtaatcgctaatcctgacaatttacccttgcattgtttaatcatttaaaatt 36694570  T
Q  476 tcgtcactctcccc 489  Q
    ||||| ||||||||    
T  36694569 tcgtctctctcccc 36694556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 376 - 489
Target Start/End: Complemental strand, 36710770 - 36710657
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||| || |||||||| ||||| |||| | | | | ||||||||| |||  |||||||   |||||||||||||||||    
T  36710770 atatgtatttcatccttgcaattaggtgttgtttaaaaattggtctctgtaatcgctaatcctgacaatttacccttgcattgtttaatcatttaaaatt 36710671  T
Q  476 tcgtcactctcccc 489  Q
    ||||| ||||||||    
T  36710670 tcgtctctctcccc 36710657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 40210708 - 40210654
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaa 515  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| |||||||||||    
T  40210708 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgccacgtcactaa 40210654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 46163037 - 46163175
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  || || |||||||||||||||| |||||   || | | | | ||||||||| |||  |||||||   |||||||||||||||||    
T  46163037 atatgtatttcatcattgtaattaggggtcgtttaaaaattggtccatgtaatcgctaatcctgacaatttacccttgcattgtttaatcatttaaaatt 46163136  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | |||||| ||||||| |||||||||    
T  46163137 tcgtctctctccc--cacttaattactgtcatgtcactaat 46163175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 516
Target Start/End: Original strand, 21444666 - 21444739
Alignment:
Q  441 cattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||| ||||  ||||||||||||| |||||||||||||  ||||||  | ||||||||||| ||||||||||||    
T  21444666 cattttatcctatcaaaatttaatcacttaaaatttcgtccatctccc--cacttaatcactgccacgtcactaat 21444739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 533
Target Start/End: Complemental strand, 27999194 - 27999117
Alignment:
Q  454 caaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaatctgcttatgcggcagtg 533  Q
    |||||||||||||||| |||||||||| |||| ||  | ||||||||||| ||| |||||||| |||| ||| |||||||    
T  27999194 caaaatttaatcattttaaatttcgtctctcttcc--cacttaatcactgccacctcactaatttgctgatgtggcagtg 27999117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 480
Target Start/End: Original strand, 40435352 - 40435456
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||||||||||| |||||   || ||| ||| |||||  |||||||  | || |||||||||||||||||||||    
T  40435352 atatgtatttcatccttgcaattaggggtcgtttaaaaattggtcattgtattcgttaatccttgcattttgcacctgtaaaatttaatcatttaaaatt 40435451  T
Q  476 tcgtc 480  Q
     ||||    
T  40435452 ccgtc 40435456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 489
Target Start/End: Complemental strand, 10304198 - 10304163
Alignment:
Q  454 caaaatttaatcatttaaaatttcgtcactctcccc 489  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10304198 caaaatttaatcatttaaaatttcgtctctctcccc 10304163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 13914405 - 13914350
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | || |||||||| ||||||||||||    
T  13914405 tttaatcatttaaaatttcgtccctctccc--cactaaatcactgccacgtcactaat 13914350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 489
Target Start/End: Complemental strand, 16970877 - 16970843
Alignment:
Q  455 aaaatttaatcatttaaaatttcgtcactctcccc 489  Q
    |||||||||||||||||||||||||| ||||||||    
T  16970877 aaaatttaatcatttaaaatttcgtccctctcccc 16970843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 24009879 - 24009824
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| ||| ||||||||    
T  24009879 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgccacatcactaat 24009824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 32917350 - 32917405
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| ||| ||||||||    
T  32917350 tttaatcatttaaaatttcgtctctctccc--cacttaatcactgccacatcactaat 32917405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 42248563 - 42248618
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| ||||| ||||||    
T  42248563 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgccacgtgactaat 42248618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 489
Target Start/End: Original strand, 26024446 - 26024543
Alignment:
Q  392 tgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccc 489  Q
    ||||| |||||||||||||||| ||||| |||| | | | | |||||| || |||  |||||||   ||||||||||||||| |||||| ||||||||    
T  26024446 tgcaattaggggtcgtttaaaaattggtctctgtaatcgctaatcctggcaatttacccttgcattgtttaatcatttaaaagttcgtccctctcccc 26024543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 476
Target Start/End: Original strand, 32927312 - 32927365
Alignment:
Q  423 tgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaattt 476  Q
    ||||||| || ||||||||||||||||  | ||||||||||||| |||||||||    
T  32927312 tgaatttattaatcctgacattttgtcgctacaaaatttaatcagttaaaattt 32927365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 489
Target Start/End: Original strand, 41098756 - 41098853
Alignment:
Q  392 tgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccc 489  Q
    ||||| |||||||||||||||| ||||| |||| | | | | ||||||||| |||  |||||||   |||||||||||||||||| ||| | ||||||    
T  41098756 tgcaattaggggtcgtttaaaaattggtctctgtaatcgctaatcctgacaatttacccttgcattgtttaatcatttaaaattttgtccccctcccc 41098853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 516
Target Start/End: Complemental strand, 34464797 - 34464732
Alignment:
Q  449 ccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||  |||||||||||||||||| ||| |||||||  | ||||||||||| || |||||||||    
T  34464797 ccttgcaatgtttaatcatttaaaattttgtccctctccc--cacttaatcactgccatgtcactaat 34464732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 10782900 - 10782614
Alignment:
Q  19 caatattgtttcaggcttccagatccgaaaagtataaagctgcaagtaattattattccaccacatatactgtggatgagcttatgcaatcaaagagtat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10782900 caatattgtttcaggcttccagatccgaaaagtataaagctgcaagtaattattattccaccacatatactgtggatgagcttatgcaatcaaagagtat 10782801  T
Q  119 gaagaaggaatcatgctctaagcttaagtgggactcaggcactagacaatatgtggatatgctagttgatgctatcaaaaaagatcaggcacagaaagcc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10782800 gaagaaggaatcatgctctaagcttaagtgggactcaggcactagacaatatgtggatatgctagttgatgctatcaaaaaagatcaggcacagaaagac 10782701  T
Q  219 nnnnnnnnggaagggccttcacctacagttaaaaaagaagaggtaaatctattttgnnnnnnnattctaaaaataattcaattcatata 307  Q
            ||||||||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  10782700 aaaaaaaaggaagggccttcacctacagtgaaaaaagaagaggtaaatctattttg--tttttattctaaaaataattcaattcatata 10782614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 377 - 488
Target Start/End: Original strand, 10782417 - 10782528
Alignment:
Q  377 tatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaattt 476  Q
    |||||||||  || ||||||||| ||||| ||||||||||||||  |||||||| | ||||| | ||||||| | |||||||||||||||||||||||||    
T  10782417 tatgtgtttagtccctgcaaatatgggtcatttaaaatttggttaatgaatttgctaatcctaatattttgttcctgcaaaatttaatcatttaaaattt 10782516  T
Q  477 cgtcactctccc 488  Q
    |||| |||||||    
T  10782517 cgtctctctccc 10782528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 376 - 480
Target Start/End: Original strand, 26463186 - 26463290
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| ||| ||| |||||| |||||||||||||||| |||||  ||| ||| ||| |||||| ||  ||  ||||||||| |||||||||||||||||    
T  26463186 atatgtatttgatccctgcaattaggggtcgtttaaaaattggtccctgtattcgttaatcctggcaaattacccttgcaaagtttaatcatttaaaatt 26463285  T
Q  476 tcgtc 480  Q
    |||||    
T  26463286 tcgtc 26463290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 21628134 - 21627996
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| ||||||||| |||||| |||||  ||| | | | | ||||||||| |||  |||||||   |||||||||||||||||    
T  21628134 atatgtatttcatccttgcaattaggggtcgcttaaaaattggtccctgtaatcgctaatcctgacaatttacccttgcattgtttaatcatttaaaatt 21628035  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    | ||| |||||||  | ||||||||||| ||||||||||||    
T  21628034 ttgtccctctccc--cacttaatcactgccacgtcactaat 21627996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 1215015 - 1215111
Alignment:
Q  377 tatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaa 473  Q
    |||||||||  || |||||||||||| || |||||||  |||| |||| |||  || |||||||||||||| |||  ||||||||||||| ||||||    
T  1215015 tatgtgtttagtccctgcaaatagggctcatttaaaacatggtctctgtattgcttaatcctgacattttgccctgtcaaaatttaatcacttaaaa 1215111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 516
Target Start/End: Complemental strand, 1215222 - 1215149
Alignment:
Q  441 cattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||| |||  ||||||||||||| ||||||||||||| || ||||  | ||||||||||| ||||||||||||    
T  1215222 cattttgccctgtcaaaatttaatcacttaaaatttcgtccctatccc--cacttaatcactgccacgtcactaat 1215149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 516
Target Start/End: Original strand, 24210611 - 24210676
Alignment:
Q  449 ccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||| ||||||||||||||||||| || |||||||  ||| ||||||| | ||||||||||||    
T  24210611 ccttgcaaagtttaatcatttaaaatttcatccctctccc--cgcctaatcaccgccacgtcactaat 24210676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 516
Target Start/End: Original strand, 33647043 - 33647108
Alignment:
Q  449 ccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||  ||||||||||||||||||||||| |||||||  |  |||||||||| ||||||||||||    
T  33647043 ccttgcattatttaatcatttaaaatttcgtctctctccc--catttaatcactgccacgtcactaat 33647108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 3059347 - 3059402
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| ||||  |||| ||||||||||| || |||||||||    
T  3059347 tttaatcatttaaaatttcgtccctct--cctcacttaatcactgccatgtcactaat 3059402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 12080726 - 12080781
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| || |||||||||    
T  12080726 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgccatgtcactaat 12080781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 33517624 - 33517679
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | |||||||||||  |||||||||||    
T  33517624 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgctacgtcactaat 33517679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 489
Target Start/End: Original strand, 30725791 - 30725879
Alignment:
Q  401 gggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccc 489  Q
    ||||||||||||| ||||| |||| | | | | |||||| || |||  |||||||   |||||||||||||||||||||| ||||||||    
T  30725791 gggtcgtttaaaaattggtctctgtaatcgctaatcctgccaatttacccttgcactgtttaatcatttaaaatttcgtccctctcccc 30725879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 480
Target Start/End: Original strand, 31406953 - 31406989
Alignment:
Q  444 tttgtccttgcaaaatttaatcatttaaaatttcgtc 480  Q
    ||||||||||||  |||||||||||||||||||||||    
T  31406953 tttgtccttgcattatttaatcatttaaaatttcgtc 31406989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 441 - 580
Target Start/End: Original strand, 52298099 - 52298231
Alignment:
Q  441 cattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaatctgcttatgcggcagtgcttgctt 540  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||  | ||||||||||| |||||||||| |||||||| | |||||    |||      
T  52298099 cattttgtcct-gcaaaatttaatcatttaaaatttcgtctctctccc--cacttaatcactgccacgtcactattctgcttacgtggcag----tgcag 52298191  T
Q  541 acacatcaaaagtttacgcaaacggaccaaaatgccccta 580  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  52298192 acacatcaaaagtttacgtgaacggaccaaaatgccccta 52298231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 52298388 - 52298304
Alignment:
Q  395 aaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgt 479  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||  |||||||||  ||||||||||||||||||||||||||||    
T  52298388 aaataggggtcatttaaaatttggttcctgaatttgttaatcctagcattttgtctatgcaaaatttaatcatttaaaatttcgt 52298304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 370 - 512
Target Start/End: Complemental strand, 41583658 - 41583518
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||| |||||||||||||| |||||| |||||||| ||||||| ||| |||||| ||| | | |||||| ||  ||| || ||||||| ||||||||||    
T  41583658 gctttaatatgtgtttcatccctgcaattaggggtcatttaaaaattgatttctgtattcgctaatcctggcaaattgcccctgcaaaagttaatcattt 41583559  T
Q  470 aaaatttcgtcactctcccctcgcttaatcactgtcacgtcac 512  Q
    ||||||||||| ||||   ||| ||||||||||| ||||||||    
T  41583558 aaaatttcgtccctct--tctcacttaatcactgccacgtcac 41583518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 512
Target Start/End: Original strand, 40387468 - 40387608
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||| |||||||||||||| |||||| |||||| | ||||||| |||||  ||| ||| | | |||||| ||  ||| || ||||||| ||||||||||    
T  40387468 gctttaatatgtgtttcatccctgcaattaggggccatttaaaaattggtccctgtattcgctaatcctggcaaattgcccctgcaaaagttaatcattt 40387567  T
Q  470 aaaatttcgtcactctcccctcgcttaatcactgtcacgtcac 512  Q
    ||||||||||  ||||   ||| ||||||||||| ||||||||    
T  40387568 aaaatttcgttcctct--tctcacttaatcactgccacgtcac 40387608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 35028336 - 35028281
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||||||||||||||||||||||||  | ||||||||||| ||||||||||||    
T  35028336 tttaatcatttaaaatttcgtcactctccc--cacttaatcactgccacgtcactaat 35028281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 383 - 516
Target Start/End: Original strand, 53701826 - 53701957
Alignment:
Q  383 tttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcac 482  Q
    |||||||  ||||| |||||||||||||||| ||| | |||| | |   | ||||||||| ||| ||||||||   ||||||||||||||||||| || |    
T  53701826 tttcatccttgcaattaggggtcgtttaaaaattgatctctgtaatctctaatcctgacaatttatccttgcattgtttaatcatttaaaatttcttccc 53701925  T
Q  483 tctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||  | ||||||||||| ||||||||||||    
T  53701926 tctccc--cacttaatcactgccacgtcactaat 53701957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 14801743 - 14801881
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||| ||||||||||| ||||| | || | | | | ||||||||| |||  ||||| |   |||||||||||||||||    
T  14801743 atatgtatttcatccttgcaattaggagtcgtttaaaaattggtctttgtaatcgctaatcctgacaatttacccttgtattgtttaatcatttaaaatt 14801842  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | ||||||||||| ||||||||||||    
T  14801843 tcgtccctctccc--cacttaatcactgccacgtcactaat 14801881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 52909260 - 52909398
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||| ||||| ||||||||||| |||| |||||  ||| | | | | ||||||||| |||  |||||||   |||||||||||||||||    
T  52909260 atatgtatttcatctttgcaattaggggtcgttcaaaaattggtcactgtaatcgctaatcctgacaatttacccttgcattgtttaatcatttaaaatt 52909359  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||  ||||||  | ||||||||||| || |||||||||    
T  52909360 tcgtccatctccc--cacttaatcactgccatgtcactaat 52909398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 438
Target Start/End: Original strand, 52295532 - 52295600
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcct 438  Q
    ||||||||||||||||| | ||| || |||||||||||||||||||||||   |||||||||| |||||    
T  52295532 gcttttatatgtgtttcgtatctacatataggggtcgtttaaaatttggtccatgaatttgttaatcct 52295600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 489
Target Start/End: Complemental strand, 43155895 - 43155804
Alignment:
Q  398 taggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccc 489  Q
    |||||||||||||||| |||||  ||| | | ||| |||||| || ||| ||| ||||  ||||||||||||||||||||||| ||||||||    
T  43155895 taggggtcgtttaaaaattggtccctgtaatcgttaatcctggcaatttatccctgcattatttaatcatttaaaatttcgtccctctcccc 43155804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 516
Target Start/End: Complemental strand, 17356256 - 17356205
Alignment:
Q  463 atcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||| |||||||| |  |||||||||||||||||||||||    
T  17356256 atcatttaaaatttcgtccctctccccac--ttaatcactgtcacgtcactaat 17356205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 34765718 - 34765663
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| ||||||||||||    
T  34765718 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgccacgtcactaat 34765663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 37976491 - 37976436
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||||||||||||||||||||||||  | ||||||||||| || |||||||||    
T  37976491 tttaatcatttaaaatttcgtcactctccc--cacttaatcactgccatgtcactaat 37976436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 513
Target Start/End: Original strand, 48528551 - 48528614
Alignment:
Q  448 tccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcact 513  Q
    ||||||||||||||||||||||||||||||||  || ||||  | ||||||||||||||| |||||    
T  48528551 tccttgcaaaatttaatcatttaaaatttcgttcctatccc--cacttaatcactgtcacatcact 48528614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 494 - 580
Target Start/End: Complemental strand, 29321210 - 29321128
Alignment:
Q  494 ttaatcactgtcacgtcactaatctgcttatgcggcagtgcttgcttacacatcaaaagtttacgcaaacggaccaaaatgccccta 580  Q
    |||||||||| |||||||||||| |||||| | |||||||||  |    ||||||||| ||||||  ||||||||||||||||||||    
T  29321210 ttaatcactgccacgtcactaatttgcttacgtggcagtgctatc----acatcaaaattttacgtgaacggaccaaaatgccccta 29321128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 376 - 489
Target Start/End: Complemental strand, 54087116 - 54087003
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  || || |||||||||||||||| |||||  ||| | | ||| ||| ||||| |||  |||||||   |||||||||||||||||    
T  54087116 atatgtatttcatcattgtaattaggggtcgtttaaaaattggtccctgtaatcgttaatcatgacaatttacccttgcattgtttaatcatttaaaatt 54087017  T
Q  476 tcgtcactctcccc 489  Q
    ||||| ||||||||    
T  54087016 tcgtctctctcccc 54087003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 519
Target Start/End: Complemental strand, 10781821 - 10781764
Alignment:
Q  460 ttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaatctg 519  Q
    ||||||||||||||||||||| |||||||  |  |||| |||||||||||||||||||||    
T  10781821 ttaatcatttaaaatttcgtccctctccc--cagttaaccactgtcacgtcactaatctg 10781764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 519
Target Start/End: Original strand, 24349765 - 24349822
Alignment:
Q  460 ttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaatctg 519  Q
    ||||||||||||||||||||| |||||||  |  |||||||||| |||||||||||||||    
T  24349765 ttaatcatttaaaatttcgtccctctccc--cagttaatcactgccacgtcactaatctg 24349822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 15508011 - 15507956
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| | ||||||||||    
T  15508011 tttaatcatttaaaatttcgtctctctccc--cacttaatcactgccgcgtcactaat 15507956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 513
Target Start/End: Complemental strand, 48529925 - 48529862
Alignment:
Q  448 tccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcact 513  Q
    ||||| ||||||||||||||||||||||| ||| ||||| |  | ||||||||||| |||||||||    
T  48529925 tcctttcaaaatttaatcatttaaaattttgtccctctctc--cacttaatcactgccacgtcact 48529862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 508
Target Start/End: Complemental strand, 50418975 - 50418928
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacg 508  Q
    |||||||||||||||||||||| |||||||  | ||||||||||||||||    
T  50418975 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgtcacg 50418928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 516
Target Start/End: Original strand, 16605693 - 16605747
Alignment:
Q  460 ttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||||||||||||||  | |||||| | ||||||||||| ||||||||||||    
T  16605693 ttaatcatttaaaatttcgt--ccctccccccacttaatcactgccacgtcactaat 16605747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 489
Target Start/End: Original strand, 27934555 - 27934652
Alignment:
Q  392 tgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccc 489  Q
    ||||| |||||||||||||||| || ||  ||| | ||| | |||||| || |||  ||||||||   ||||||||||||||||||||| ||||||||    
T  27934555 tgcaattaggggtcgtttaaaaatttgtccctgtaattgctaatcctggcaatttagccttgcaattgttaatcatttaaaatttcgtccctctcccc 27934652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 516
Target Start/End: Complemental strand, 7280466 - 7280389
Alignment:
Q  437 ctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||||| | |  ||||||||||||| ||||||||  ||| |||||||  | ||||||||||| ||||||||||||    
T  7280466 ctgacattttgccatgtcaaaatttaatcacttaaaattatgtctctctccc--cacttaatcactgccacgtcactaat 7280389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 372 - 516
Target Start/End: Original strand, 2940938 - 2941081
Alignment:
Q  372 ttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaa 471  Q
    ||||||||||||||  || ||| ||||||||||| |||||||||||||  ||||||||||| |||||  |||||| ||  | ||||||||| ||||||||    
T  2940938 ttttatatgtgtttagtccctgtaaataggggtcatttaaaatttggtccctgaatttgttaatcctagcattttatcactacaaaatttattcatttaa 2941037  T
Q  472 aatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| ||| |||||||| | |||||||| |||||||||||||||    
T  2941038 aatttggtccctctcccc-cacttaatcagtgtcacgtcactaat 2941081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 370 - 485
Target Start/End: Original strand, 6846785 - 6846900
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| |||||   |||||| ||| |||| | |||||||||| ||||||||| ||||||||    
T  6846785 gcttttatatgtgtttaatccctgcaaataggggtcatttaaaaattggtccttgaattcgttaatccgggcattttgtccctgcaaaattgaatcattt 6846884  T
Q  470 aaaatttcgtcactct 485  Q
    ||||||||||| ||||    
T  6846885 aaaatttcgtccctct 6846900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 392 - 516
Target Start/End: Original strand, 10840499 - 10840621
Alignment:
Q  392 tgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctc 491  Q
    |||||||||||||| |||||||||||||| || ||||  || |||||||||||||| |  | ||||||||||||||||||| ||||||| |||| ||  |    
T  10840499 tgcaaataggggtcatttaaaatttggttccttaattcattaatcctgacattttgccacttcaaaatttaatcatttaaactttcgtccctcttcc--c 10840596  T
Q  492 gcttaatcactgtcacgtcactaat 516  Q
     ||||||||||||||||||||||||    
T  10840597 acttaatcactgtcacgtcactaat 10840621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 372 - 516
Target Start/End: Complemental strand, 11721515 - 11721373
Alignment:
Q  372 ttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaa 471  Q
    ||||||||||||||  ||| || ||||||||||| ||||||| ||| |  ||| |||  || ||||||||||||| ||||  ||||||||||||| ||||    
T  11721515 ttttatatgtgtttagtctttggaaataggggtcatttaaaaattgatccctgtattctttaatcctgacattttatcctgccaaaatttaatcacttaa 11721416  T
Q  472 aatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||| |||||||  | ||||||||||||||||||||||||    
T  11721415 aatttcgtctctctccc--cacttaatcactgtcacgtcactaat 11721373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 377 - 480
Target Start/End: Complemental strand, 6848154 - 6848051
Alignment:
Q  377 tatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaattt 476  Q
    |||||||||  |||||||||||| ||||| ||||||| |||||   |||||| ||| ||||||||||||||||| || ||||||||||||||||||||||    
T  6848154 tatgtgtttactctctgcaaataagggtcatttaaaaattggtcattgaattcgttaatcctgacattttgtccctgaaaaatttaatcatttaaaattt 6848055  T
Q  477 cgtc 480  Q
    ||||    
T  6848054 cgtc 6848051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 11349632 - 11349522
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||  || | ||||||||| ||| ||||||||||| | | |||||| ||| ||||||||| ||||| | |  |||||||||||||||    
T  11349632 gcttttatatgtgtttagtcccagcaaataggagtcatttaaaatttgatctttgaattcgttaatcctgacagtttgtacctataaaatttaatcattt 11349533  T
Q  470 aaaatttcgtc 480  Q
    |||||||||||    
T  11349532 aaaatttcgtc 11349522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 370 - 473
Target Start/End: Complemental strand, 10841803 - 10841700
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||  || ||||||||||||||| ||||||||||  |  ||||||| ||| |||||| ||||||| |  | ||||||||||||||||    
T  10841803 gcttttatatgtgtttagtccctgcaaataggggtcatttaaaattttatccctgaattcgttaatcctggcattttgccacttcaaaatttaatcattt 10841704  T
Q  470 aaaa 473  Q
    ||||    
T  10841703 aaaa 10841700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 370 - 507
Target Start/End: Original strand, 17266399 - 17266534
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||  || ||| |||||||| || |||||||  ||||   || ||| ||| ||||||||| |||  |||| ||||||||||||||||    
T  17266399 gcttttatatgtgtttagtccctgtaaatagggatcatttaaaaaatggtcaatgtattcgtttatcctgacaattttcccttccaaaatttaatcattt 17266498  T
Q  470 aaaatttcgtcactctcccctcgcttaatcactgtcac 507  Q
    ||||||| ||| |||||||  | |||||||||||||||    
T  17266499 aaaatttggtccctctccc--cacttaatcactgtcac 17266534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 516
Target Start/End: Original strand, 11689544 - 11689686
Alignment:
Q  372 ttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaa 471  Q
    ||||||||||||||  ||  || ||||||||||| ||||||| ||| |  ||| |||  || |||| | |||||||||||  ||||||||||||| ||||    
T  11689544 ttttatatgtgtttagtccttggaaataggggtcatttaaaaattgatccctgtattctttaatcccggcattttgtcctgccaaaatttaatcacttaa 11689643  T
Q  472 aatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||  ||||||  | ||||||||||| ||||||||||||    
T  11689644 aatttcgtccatctccc--cacttaatcactgccacgtcactaat 11689686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 516
Target Start/End: Original strand, 15848083 - 15848233
Alignment:
Q  364 tgtaaagcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaa 463  Q
    ||||| |||| ||||||| |||||||  ||||| |||||||||||||||| |||||  ||| | | | | ||||||  | |||  |||||||   |||||    
T  15848083 tgtaaggcttatatatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggtaatttacccttgcattgtttaa 15848182  T
Q  464 tcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||||||||||| |||||||  | ||||||||||| ||||||||||||    
T  15848183 tcatttaaaatttcgtccctctccc--cacttaatcactgccacgtcactaat 15848233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 489
Target Start/End: Original strand, 16105553 - 16105672
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||  || ||| ||||||||| | |||||||  ||||  ||| |||  || |||||||||||||| |||  ||||||||||||||||    
T  16105553 gcttttatatgtgtttagtccctgtaaataggggccatttaaaaaatggtccctgcattccttaatcctgacattttgccctcccaaaatttaatcattt 16105652  T
Q  470 aaaatttcgtcactctcccc 489  Q
    ||||||| ||| ||| ||||    
T  16105653 aaaatttagtctctcccccc 16105672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 36755183 - 36755238
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||||||||||||||||    
T  36755183 tttaatcatttaaaatttcgtctctctccc--cacttaatcactgtcacgtcactaat 36755238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 370 - 489
Target Start/End: Complemental strand, 17266759 - 17266638
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaatagggg-tcgtttaaaatt-tggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcat 467  Q
    ||||||||||||||||  |  ||||||||||||| || |||||||   |||| |||| ||| ||| ||| ||||| |||| |||  ||||||||||||||    
T  17266759 gcttttatatgtgtttagttcctgcaaatagggggtcatttaaaaaaatggtctctgtattcgttaatcttgacaatttgccctcccaaaatttaatcat 17266660  T
Q  468 ttaaaatttcgtcactctcccc 489  Q
    |||||||||||||| |||||||    
T  17266659 ttaaaatttcgtcattctcccc 17266638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 488
Target Start/End: Original strand, 11347496 - 11347542
Alignment:
Q  442 attttgtccttgcaaaatttaatcatttaaaatttcgtcactctccc 488  Q
    |||| |||| ||||||||||||||||||||||||||||| |||||||    
T  11347496 atttggtccctgcaaaatttaatcatttaaaatttcgtctctctccc 11347542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 37895685 - 37895630
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| ||||||||||||    
T  37895685 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgccacgtcactaat 37895630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 516
Target Start/End: Complemental strand, 44714175 - 44714044
Alignment:
Q  383 tttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcac 482  Q
    |||||||  ||||| |||||||||||||||| || ||  ||| | ||| | |||||| || |||  |||||||   |||||||||||||||||||||| |    
T  44714175 tttcatccttgcaattaggggtcgtttaaaaattagtccctgtaattgctaatcctggcaatttacccttgcattgtttaatcatttaaaatttcgtccc 44714076  T
Q  483 tctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||  | ||||||||||| || |||||||||    
T  44714075 tctccc--cacttaatcactgccatgtcactaat 44714044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 480
Target Start/End: Original strand, 3555257 - 3555361
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||||||||||| ||||| |||| ||| |||  |||| |||  ||  |||||||   |||||||||||||||||    
T  3555257 atatgtatttcatccttgcaattaggggtcgtttaaaaattggtctctgtattcgttattccttacaaattagccttgcattctttaatcatttaaaatt 3555356  T
Q  476 tcgtc 480  Q
    |||||    
T  3555357 tcgtc 3555361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 36382169 - 36382306
Alignment:
Q  377 tatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaattt 476  Q
    ||||| |||||||  ||||| ||||| |||||||||| |||||  ||  | | | | ||||||||| |||  |||||||   ||||||||||||||||||    
T  36382169 tatgtatttcatccttgcaattagggttcgtttaaaaattggtccctataatcgctaatcctgacaatttacccttgcattgtttaatcatttaaaattt 36382268  T
Q  477 cgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    | || |||||||  | ||||||||||| ||||||||||||    
T  36382269 catccctctccc--cacttaatcactgccacgtcactaat 36382306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 477
Target Start/End: Original strand, 39935457 - 39935563
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||| ||||||||||| || |||||| |||| || |||||||| ||||||  |  | | ||| |||||||||  || |||||||||| |||||||||||    
T  39935457 gctttaatatgtgtttcgtc-ctgcaattaggtgtggtttaaaaattggttcttataatcgttaatcctgacaaattatccttgcaaagtttaatcattt 39935555  T
Q  470 aaaatttc 477  Q
    ||||||||    
T  39935556 aaaatttc 39935563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 39423605 - 39423660
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| || |||||||||    
T  39423605 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgccatgtcactaat 39423660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 485
Target Start/End: Complemental strand, 3653428 - 3653392
Alignment:
Q  449 ccttgcaaaatttaatcatttaaaatttcgtcactct 485  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  3653428 ccttgcaaagtttaatcatttaaaatttcgtccctct 3653392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 15645139 - 15645029
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||  |  ||||||||  ||||| ||||||| ||||||| || ||| ||| |||||||||||||| |||  ||||||||||||||||    
T  15645139 gcttttatatgtgtttagttcctgcaaatgtgggtcatttaaaaattggtttatgtattcgttaatcctgacattttgccctcccaaaatttaatcattt 15645040  T
Q  470 aaaatttcgtc 480  Q
    |||||||||||    
T  15645039 aaaatttcgtc 15645029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 370 - 516
Target Start/End: Original strand, 12904755 - 12904899
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    |||||||||| |||||  || ||  |||||||| || |||||||  ||||  ||| ||| ||| ||||||||| ||||||||  ||||||||||| ||||    
T  12904755 gcttttatatctgtttagtccctctaaatagggatcatttaaaaaatggtccctgtattcgttaatcctgacaatttgtcctcccaaaatttaataattt 12904854  T
Q  470 aaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||||| |||||||  | |||||||| |||||||||||||||    
T  12904855 aaaatttcgtccctctccc--cacttaatcaatgtcacgtcactaat 12904899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 370 - 476
Target Start/End: Original strand, 5326058 - 5326164
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    |||||||||||||||| ||| ||||||||||||||| |||||||  ||||  ||| |||  || |||||| ||||||| |||| |||||||||||| |||    
T  5326058 gcttttatatgtgtttaatccctgcaaataggggtcatttaaaaaatggtccctgcattccttaatcctggcattttgccctttcaaaatttaatctttt 5326157  T
Q  470 aaaattt 476  Q
    |||||||    
T  5326158 aaaattt 5326164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 19892729 - 19892591
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| ||| |||||||||||| ||||| |||| | | ||| ||||| ||| |||  |||||||   |||||||||||||||||    
T  19892729 atatgtatttcatccttgcaattagaggtcgtttaaaaattggtctctgtaatcgttaatcctaacaatttacccttgcattgtttaatcatttaaaatt 19892630  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||| ||||||  | ||||||||||| ||||||||||||    
T  19892629 tcgtcattctccc--cacttaatcactgccacgtcactaat 19892591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 42067951 - 42067841
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||| |||||||||||||| |||||| |||||||| |||||||||||||  ||| | ||| | |||||| ||   || || |||||| |||||||||||    
T  42067951 gctttaatatgtgtttcatccctgcaattaggggtcatttaaaatttggtccctgtaattgataatcctggcaaactgcccctgcaaactttaatcattt 42067852  T
Q  470 aaaatttcgtc 480  Q
    |||||||||||    
T  42067851 aaaatttcgtc 42067841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 516
Target Start/End: Original strand, 13962887 - 13963009
Alignment:
Q  392 tgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctc 491  Q
    ||||| |||||||||||||||| |||||  ||| | ||| | ||||||  | |||  |||||||   |||||||||||||||||||||| ||||  ||||    
T  13962887 tgcaattaggggtcgtttaaaaattggtccctgtaattgctaatcctggtaatttacccttgcattgtttaatcatttaaaatttcgtccctct--cctc 13962984  T
Q  492 gcttaatcactgtcacgtcactaat 516  Q
     ||||||||||||||||||||||||    
T  13962985 acttaatcactgtcacgtcactaat 13963009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 39453307 - 39453445
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||||||||||| ||||| |||| | | | | |||||| || |||  |||||||   |||||||||||||||||    
T  39453307 atatgtatttcatccttgcaattaggggtcgtttaaaaattggtctctgtaatcgctaatcctggcaatttacccttgcattgtttaatcatttaaaatt 39453406  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | ||||||||||| || |||||||||    
T  39453407 tcgtccctctccc--cacttaatcactggcatgtcactaat 39453445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 370 - 489
Target Start/End: Original strand, 14848740 - 14848859
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||  || |||||||||||| || |||||||  |||||| || |||  || |||||  ||||||  |||  ||||||||||||||||    
T  14848740 gcttttatatgtgtttagtccctgcaaatagggatcatttaaaaaatggtttgtgcattccttaatccttgcatttttccctcccaaaatttaatcattt 14848839  T
Q  470 aaaatttcgtcactctcccc 489  Q
    ||||||| ||| ||| ||||    
T  14848840 aaaatttggtccctcccccc 14848859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 434 - 516
Target Start/End: Complemental strand, 29646725 - 29646645
Alignment:
Q  434 atcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||| |||  |||||||   |||||||||||||||||||||| |||||||  | |||||||||||||| |||||||||    
T  29646725 atcctgacaatttacccttgcattgtttaatcatttaaaatttcgtccctctccc--cacttaatcactgtcatgtcactaat 29646645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 376 - 506
Target Start/End: Complemental strand, 35920605 - 35920477
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||   |||| |||||||||||||||| |||||  ||| | | | | ||||||||| ||| ||||| ||   |||||||||||||||||    
T  35920605 atatgtatttcatcatagcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctgacaatttatccttccattgtttaatcatttaaaatt 35920506  T
Q  476 tcgtcactctcccctcgcttaatcactgtca 506  Q
    ||||| |||||||  | ||||||||||||||    
T  35920505 tcgtccctctccc--cacttaatcactgtca 35920477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 32242332 - 32242387
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| ||||||||||||    
T  32242332 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgccacgtcactaat 32242387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 489
Target Start/End: Complemental strand, 38475413 - 38475307
Alignment:
Q  383 tttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcac 482  Q
    |||||||  ||||| |||||||||||||||| |||||   || | | ||| ||||||||| |||  |||||||   |||||||||||||||||||||| |    
T  38475413 tttcatccttgcaattaggggtcgtttaaaaattggtccatgtaatcgttaatcctgacaatttacccttgcattgtttaatcatttaaaatttcgtccc 38475314  T
Q  483 tctcccc 489  Q
    |||||||    
T  38475313 tctcccc 38475307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 5993896 - 5994034
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||||||||||| |||||  ||| | | | | || ||| || |||  |||||||   |||||||||||||||||    
T  5993896 atatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaattctggcaatttacccttgcattgtttaatcatttaaaatt 5993995  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | ||||||||||| || |||||||||    
T  5993996 tcgtccctctccc--cacttaatcactgccatgtcactaat 5994034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 376 - 489
Target Start/End: Complemental strand, 16157276 - 16157163
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||||||||||| |||||  ||  | | ||| ||||||||| |||  |||||||   |||||||||||||||||    
T  16157276 atatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctataatcgttaatcctgacaatttacccttgcattgtttaatcatttaaaatt 16157177  T
Q  476 tcgtcactctcccc 489  Q
    | ||| ||||||||    
T  16157176 ttgtccctctcccc 16157163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 35512155 - 35512293
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| || ||||||||||||| |||||  ||| | | | | |||||| || |||  |||||||   |||||||||||||||||    
T  35512155 atatgtatttcatccttgcaattaagggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttacccttgcattgtttaatcatttaaaatt 35512254  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | ||||||||||| ||| ||||||||    
T  35512255 tcgtccctctccc--cacttaatcactgccacatcactaat 35512293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 516
Target Start/End: Original strand, 10684028 - 10684084
Alignment:
Q  458 atttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||||||||||||| |||||| |  |||| |||||||||||||| |||||||||    
T  10684028 atttaatcatttaaaattttgtcacttt--cctcacttaatcactgtcatgtcactaat 10684084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 8322494 - 8322549
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||||||  ||||||||    
T  8322494 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgtcatttcactaat 8322549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 11047527 - 11047582
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| || |||||||||    
T  11047527 tttaatcatttaaaatttcgtctctctccc--cacttaatcactgccatgtcactaat 11047582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 18247497 - 18247449
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctg 424  Q
    |||||| |||||||  ||||| |||||||||||||||||||||| ||||    
T  18247497 atatgtatttcatccttgcaattaggggtcgtttaaaatttggtctctg 18247449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 580
Target Start/End: Complemental strand, 40150081 - 40150037
Alignment:
Q  536 tgcttacacatcaaaagtttacgcaaacggaccaaaatgccccta 580  Q
    |||| ||||||||||| ||||||  ||||||||||||||||||||    
T  40150081 tgctaacacatcaaaactttacgtgaacggaccaaaatgccccta 40150037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 33689800 - 33689662
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||| ||||| |||||||||||||||| ||||||  || | | | | |||||| || |||  |||||||  ||||||||||||||||||    
T  33689800 atatgtatttcatctttgcaattaggggtcgtttaaaaattggttcatgtaatcgctaatcctggcaatttacccttgcattatttaatcatttaaaatt 33689701  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | ||||||||||| ||||||||||||    
T  33689700 tcgtccctctccc--cacttaatcactgccacgtcactaat 33689662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 371 - 485
Target Start/End: Original strand, 30380848 - 30380962
Alignment:
Q  371 cttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattta 470  Q
    |||||||||||||||  | |||| ||||||| ||| ||||||| ||||||| ||  ||| || ||||||| |||||||| |  |||||||||||||||||    
T  30380848 cttttatatgtgtttagtttctgtaaataggagtcatttaaaaattggtttttgtttttcttaatcctgatattttgtcatgtcaaaatttaatcattta 30380947  T
Q  471 aaatttcgtcactct 485  Q
    |||||||||| ||||    
T  30380948 aaatttcgtccctct 30380962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 25108522 - 25108412
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||| |||||||||||||| |||||| |||||||| |||||||||||||  ||| | ||| | |||||| ||   ||||| ||||||  ||||||||||    
T  25108522 gctttaatatgtgtttcatccctgcaattaggggtcatttaaaatttggtccctgtaattgctaatcctggcaaactgtccctgcaaacgttaatcattt 25108423  T
Q  470 aaaatttcgtc 480  Q
    |||||||||||    
T  25108422 aaaatttcgtc 25108412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 376 - 507
Target Start/End: Complemental strand, 40033877 - 40033748
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||||||||||| |||||||||  | ||| | |||||| || |||  |||||||   |||||||||||||||||    
T  40033877 atatgtatttcatccttgcaattaggggtcgtttaaaaattggtttctataattgctaatcctggcaatttacccttgcattgtttaatcatttaaaatt 40033778  T
Q  476 tcgtcactctcccctcgcttaatcactgtcac 507  Q
    | ||| |||||||  | |||||||||||||||    
T  40033777 ttgtccctctccc--cacttaatcactgtcac 40033748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 512
Target Start/End: Complemental strand, 44654930 - 44654790
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||  || ||||||||||||||| ||||||| || ||   || |||  |  ||| || ||||||| |||  ||||||||||||| ||    
T  44654930 gcttttatatgtgtttagtccctgcaaataggggtcatttaaaaatttgtccatgtattcctaaatcatggcattttggcctgccaaaatttaatcactt 44654831  T
Q  470 aaaatttcgtcactctcccctcgcttaatcactgtcacgtcac 512  Q
    ||||||||||| |||||||  |  |||||||||||||||||||    
T  44654830 aaaatttcgtccctctccc--catttaatcactgtcacgtcac 44654790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 1079648 - 1079538
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||| |||||||||||||| |||||| |||||||| ||||||| |||||  ||| | | ||| |||||| ||  ||  ||||||||| ||||||| |||    
T  1079648 gctttaatatgtgtttcatccctgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcctggcaaattagccttgcaaagtttaatctttt 1079549  T
Q  470 aaaatttcgtc 480  Q
    |||||||||||    
T  1079548 aaaatttcgtc 1079538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 26463936 - 26463881
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||||||||||||||||    
T  26463936 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgtcacgtcactaat 26463881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 9294379 - 9294241
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||||||||||| |||||  ||  | | | | |||||| || |||  |||||||   |||||||||||||||||    
T  9294379 atatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctataatcgctaatcctggcaatttacccttgcattgtttaatcatttaaaatt 9294280  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | |||||||||||||| |||||||||    
T  9294279 tcgtccctctccc--cacttaatcactgtcatgtcactaat 9294241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 444 - 516
Target Start/End: Original strand, 41988037 - 41988107
Alignment:
Q  444 tttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||| ||| |||||||||||||||||||||||||||  ||||| |||| ||||||||||| ||| ||||||||    
T  41988037 tttgccctcgcaaaatttaatcatttaaaatttcgt--ctctctcctcacttaatcactgccacatcactaat 41988107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 370 - 489
Target Start/End: Original strand, 20704431 - 20704550
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||  || ||||||||| | ||| |||||||  ||||| ||  |||  || ||| |||||||||| |||  ||||||||||||| ||    
T  20704431 gcttttatatgtgtttagtccctgcaaataagagtcatttaaaaaatggttcctatattccttaatcttgacattttgccctgccaaaatttaatcactt 20704530  T
Q  470 aaaatttcgtcactctcccc 489  Q
    |||||| |||| ||||||||    
T  20704531 aaaattccgtccctctcccc 20704550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 370 - 516
Target Start/End: Complemental strand, 20704754 - 20704610
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||   | |||||||||||| |  |||||||  |||||  || |||| || ||||||  ||||||  ||  ||||||||||||| ||    
T  20704754 gcttttatatgtgtttagcccctgcaaatagggattatttaaaaaatggttcatgtatttcttaatcctggtattttgctctgccaaaatttaatcactt 20704655  T
Q  470 aaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||||| |||| ||  | ||||||||| ||||||||||||||    
T  20704654 aaaatttcgtccctcttcc--cacttaatcacagtcacgtcactaat 20704610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 434 - 516
Target Start/End: Original strand, 43384348 - 43384428
Alignment:
Q  434 atcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||| |||  |||||||   |||||||||||||||||||||| |||||||  | |||||||||||||| |||||||||    
T  43384348 atcctgacaatttacccttgcattgtttaatcatttaaaatttcgtctctctccc--cacttaatcactgtcatgtcactaat 43384428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 39399435 - 39399372
Alignment:
Q  454 caaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaatctg 519  Q
    |||||||||||||||||||||||| || |||||||  |  |||||||||| |||||||||||||||    
T  39399435 caaaatttaatcatttaaaatttcatctctctccc--cagttaatcactgccacgtcactaatctg 39399372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 40506209 - 40506070
Alignment:
Q  376 atatgtgtttcatctctgcaaata-ggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaat 474  Q
    |||||| |||||||  ||||| || |||||| ||||||| |||||| ||| | | ||| ||||||||| |||  |||| ||  |||||||||||||||||    
T  40506209 atatgtatttcatccttgcaattatggggtcatttaaaagttggttcctgtaatcgttaatcctgacaatttacccttacattatttaatcatttaaaat 40506110  T
Q  475 ttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||  ||||| || | |||||||||||||| || ||||||    
T  40506109 ttcgt--ctctctccgcacttaatcactgtcatgtaactaat 40506070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 54317974 - 54317911
Alignment:
Q  454 caaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaatctg 519  Q
    ||||||||||||||||||||||||||| |||||||     |||||||||| |||||||||||||||    
T  54317974 caaaatttaatcatttaaaatttcgtctctctccc--taattaatcactgccacgtcactaatctg 54317911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 23458400 - 23458262
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| || ||||||||||||| ||||| |||| | | | | |||||  || |||  |||||||   |||||||||||||||||    
T  23458400 atatgtatttcatccttgcaattatgggtcgtttaaaaattggtctctgtaatcgctaatccttgcaatttacccttgcattgtttaatcatttaaaatt 23458301  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | ||||||||||| ||| ||||||||    
T  23458300 tcgtccctctccc--cacttaatcactgccacatcactaat 23458262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 23276413 - 23276361
Alignment:
Q  367 aaagcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggt 419  Q
    |||||||| |||||||||||||| |||||| |||||||| ||||||| |||||    
T  23276413 aaagctttaatatgtgtttcatccctgcaattaggggtcatttaaaaattggt 23276361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 487
Target Start/End: Original strand, 42854517 - 42854553
Alignment:
Q  451 ttgcaaaatttaatcatttaaaatttcgtcactctcc 487  Q
    |||||||||||||||||||||||||||||| ||||||    
T  42854517 ttgcaaaatttaatcatttaaaatttcgtctctctcc 42854553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 489
Target Start/End: Complemental strand, 19741230 - 19741200
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccc 489  Q
    |||||||||||||||||||||||||||||||    
T  19741230 tttaatcatttaaaatttcgtcactctcccc 19741200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 21783851 - 21783813
Alignment:
Q  441 cattttgtccttgcaaaatttaatcatttaaaatttcgt 479  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  21783851 cattttatccctgcaaaatttaatcatttaaaatttcgt 21783813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 33156332 - 33156277
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||  | |||||| | ||||||||||| ||||||||||||    
T  33156332 tttaatcatttaaaatttcgt--ccctccccccacttaatcactgccacgtcactaat 33156277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 40758234 - 40758289
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||  ||||||||||||    
T  40758234 tttaatcatttaaaatttcgtccctctccc--cacttaatcactaccacgtcactaat 40758289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 512
Target Start/End: Complemental strand, 51994224 - 51994173
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcac 512  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| ||||||||    
T  51994224 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgccacgtcac 51994173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 489
Target Start/End: Complemental strand, 36314672 - 36314575
Alignment:
Q  392 tgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccc 489  Q
    ||||| |||| ||||||||||| || ||  ||| | ||||| |||||| || |||  ||||||||   ||||||||||||||||||||| ||||||||    
T  36314672 tgcaattaggcgtcgtttaaaaattcgtccctgtaattgttaatcctggcaatttagccttgcaattgttaatcatttaaaatttcgtccctctcccc 36314575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 489
Target Start/End: Original strand, 46474822 - 46474935
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||| ||||| |||||||||||||||| ||||| |||| | | | | ||| || || |||  | |||||   |||||||||||||||||    
T  46474822 atatgtatttcatctttgcaattaggggtcgtttaaaaattggtctctgtaatcgctaatcttggcaatttaccattgcattgtttaatcatttaaaatt 46474921  T
Q  476 tcgtcactctcccc 489  Q
    | ||| ||||||||    
T  46474922 ttgtccctctcccc 46474935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 481
Target Start/End: Complemental strand, 47857594 - 47857561
Alignment:
Q  448 tccttgcaaaatttaatcatttaaaatttcgtca 481  Q
    |||||||||| |||||||||||||||||||||||    
T  47857594 tccttgcaaagtttaatcatttaaaatttcgtca 47857561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 489
Target Start/End: Complemental strand, 48322751 - 48322654
Alignment:
Q  392 tgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccc 489  Q
    ||||| |||| ||||||||||| || ||  ||| | ||||| |||||| || |||  ||||||||   ||||||||||||||||||||| ||||||||    
T  48322751 tgcaattaggcgtcgtttaaaaattcgtccctgtaattgttaatcctggcaatttagccttgcaattgttaatcatttaaaatttcgtccctctcccc 48322654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 480
Target Start/End: Complemental strand, 32431613 - 32431509
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||| || ||| || |||||||| ||||||| |||||  ||| | | ||| |||||||||  ||  ||||||||| ||||| |||||||||||    
T  32431613 atatgtatttcgtccctgtaattaggggtcatttaaaaattggtccctgcaatcgttaatcctgacaaattagccttgcaaagtttaaccatttaaaatt 32431514  T
Q  476 tcgtc 480  Q
    |||||    
T  32431513 tcgtc 32431509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 371 - 489
Target Start/End: Complemental strand, 11400394 - 11400277
Alignment:
Q  371 cttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattta 470  Q
    |||||||||||||||  |||||||||||| ||||| |||||||||||||  ||||||||||| |||||    ||||| |  |||||||||||||||||||    
T  11400394 cttttatatgtgtttagtctctgcaaatatgggtcatttaaaatttggtccctgaatttgttaatcct-tgtttttgccactgcaaaatttaatcattta 11400296  T
Q  471 aaatttcgtcactctcccc 489  Q
    ||||||  || ||||||||    
T  11400295 aaatttattctctctcccc 11400277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 370 - 488
Target Start/End: Complemental strand, 15714719 - 15714601
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||  || ||||||||||||||| ||||||| ||||| |||| |||  || |||||||||||||| |||  ||| ||||||||| ||    
T  15714719 gcttttatatgtgtttagtccctgcaaataggggtcatttaaaaattggtctctgcattccttaatcctgacattttgccctgccaagatttaatcactt 15714620  T
Q  470 aaaatttcgtcactctccc 488  Q
    || |||||||  |||||||    
T  15714619 aacatttcgttcctctccc 15714601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 28469429 - 28469291
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||||||||||| |||||  ||| | | ||| |||||| || |||  |||||||   |||||||||||||||||    
T  28469429 atatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgttaatcctggcaatttacccttgcattgtttaatcatttaaaatt 28469330  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | ||||||||||  ||||||||||||    
T  28469329 tcgtccctctccc--cacttaatcactaccacgtcactaat 28469291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 32053481 - 32053426
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||||||||||||||||    
T  32053481 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgtcacgtcactaat 32053426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 392 - 508
Target Start/End: Original strand, 6571036 - 6571150
Alignment:
Q  392 tgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctc 491  Q
    ||||| |||||||||||||||| |||||  ||| | | ||| ||||||||| |||  |||||||   |||||||||||||||||| ||| |||||||  |    
T  6571036 tgcaattaggggtcgtttaaaaattggtccctgtaatcgttaatcctgacaatttacccttgcattgtttaatcatttaaaattttgtccctctccc--c 6571133  T
Q  492 gcttaatcactgtcacg 508  Q
     ||||||||||||||||    
T  6571134 acttaatcactgtcacg 6571150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 488
Target Start/End: Complemental strand, 7356623 - 7356507
Alignment:
Q  371 cttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattta 470  Q
    ||||||||||||||| ||| ||| ||||||||||| ||||||| |||||  ||| ||||||| ||||||| ||| |  || || |  |||||||||||||    
T  7356623 cttttatatgtgtttaatccctgtaaataggggtcatttaaaa-ttggtccctgtatttgttaatcctgatattatacccctgaactatttaatcattta 7356525  T
Q  471 aaatttcgtcactctccc 488  Q
    |||||| ||| |||||||    
T  7356524 aaatttggtccctctccc 7356507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 476
Target Start/End: Complemental strand, 17204995 - 17204890
Alignment:
Q  371 cttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattta 470  Q
    ||||||||||| |||  ||  |||||||| | ||||||||||||||||| |||||||||||| |||||    ||||| |  ||||||||||||||||| |    
T  17204995 cttttatatgtatttagtccatgcaaataagagtcgtttaaaatttggtctctgaatttgttaatccttgttttttgccgctgcaaaatttaatcattca 17204896  T
Q  471 aaattt 476  Q
    ||||||    
T  17204895 aaattt 17204890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 370 - 489
Target Start/End: Original strand, 20563735 - 20563854
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||||||||||||||  || ||||||||||||||| |||||||||| ||   | |||||| | |||||    ||||| |  | ||||||||||||||||    
T  20563735 gcttttatatgtgtttagtccctgcaaataggggtcatttaaaatttagtccgtaaatttgctaatccttgttttttgccactacaaaatttaatcattt 20563834  T
Q  470 aaaatttcgtcactctcccc 489  Q
    ||||||| ||| ||||||||    
T  20563835 aaaatttagtctctctcccc 20563854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 376 - 510
Target Start/End: Complemental strand, 45011025 - 45010893
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||||||||||| ||||||  || ||| | | |||||  || |||  |||||||   |||||||||||||||||    
T  45011025 atatgtatttcatccttgcaattaggggtcgtttaaaaattggttcatgtattcgctaatccttgcaatttacccttgcattgtttaatcatttaaaatt 45010926  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtc 510  Q
    ||||| |||||||  | ||||||||||| ||||||    
T  45010925 tcgtctctctccc--cacttaatcactgccacgtc 45010893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 2640516 - 2640461
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | |||||||||||||| |||||||||    
T  2640516 tttaatcatttaaaatttcgtctctctccc--cacttaatcactgtcatgtcactaat 2640461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 476
Target Start/End: Complemental strand, 20426751 - 20426651
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| ||||||| |||||| ||| |||||||||||| |||||  ||| ||| | | |||||| ||||||  |||  |||| |||||||||||||||||    
T  20426751 atatgtatttcatccctgcaattagaggtcgtttaaaaattggtccctgtattcgctaatcctggcattttaccctcacaaagtttaatcatttaaaatt 20426652  T
Q  476 t 476  Q
    |    
T  20426651 t 20426651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 12229498 - 12229389
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||| |||||||||||||| || ||| ||| |||  ||||||||||| || ||  | ||||| |||||||||  || | |||||||| ||||||||||     
T  12229498 gctttaatatgtgtttcatc-ctccaattagaggttatttaaaatttgattcctataattgttaatcctgacaaattattcttgcaaagtttaatcatta 12229400  T
Q  470 aaaatttcgtc 480  Q
    |||||||||||    
T  12229399 aaaatttcgtc 12229389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 488
Target Start/End: Complemental strand, 13311436 - 13311342
Alignment:
Q  394 caaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctccc 488  Q
    |||||||||||| ||||||   |||||  || ||| ||| ||| | ||| |||| |||| ||||||||||| ||||||||||||||| |||||||    
T  13311436 caaataggggtcatttaaacaatggttcatgtattcgttaatcttaacaatttgcccttccaaaatttaataatttaaaatttcgtccctctccc 13311342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 23181332 - 23181277
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| ||||| |  | |||||||||||||| |||||||||    
T  23181332 tttaatcatttaaaatttcgtccctctctc--cacttaatcactgtcatgtcactaat 23181277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 516
Target Start/End: Original strand, 38643636 - 38643695
Alignment:
Q  455 aaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||| |||||||||||| |||||||| |||||||  | |||||| |||||||||||||||||    
T  38643636 aaaaattaatcatttaagatttcgtccctctccc--cacttaattactgtcacgtcactaat 38643695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 40379859 - 40379914
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | |||||||| || ||||||||||||    
T  40379859 tttaatcatttaaaatttcgtccctctccc--cacttaatcaatgccacgtcactaat 40379914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 42731509 - 42731564
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| || |||||||||    
T  42731509 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgccatgtcactaat 42731564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 13311146 - 13311191
Alignment:
Q  443 ttttgtccttgcaaaatttaatcatttaaaatttcgtcactctccc 488  Q
    ||||| |||| ||||||||||| ||||||||||||||||| |||||    
T  13311146 ttttgccctttcaaaatttaataatttaaaatttcgtcaccctccc 13311191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 23608809 - 23608886
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttg 447  Q
    ||||||||||||||||  ||  |||||||||||||| ||||||| |||||  ||| |||| || |||||| |||||||    
T  23608809 gcttttatatgtgtttagtccttgcaaataggggtcatttaaaaattggtccctgtatttcttaatcctggcattttg 23608886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 511
Target Start/End: Complemental strand, 27396933 - 27396883
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtca 511  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| |||||||    
T  27396933 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgccacgtca 27396883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 479
Target Start/End: Original strand, 32687426 - 32687507
Alignment:
Q  398 taggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgt 479  Q
    |||||||| |||||||||||||  ||| | | ||| |||||| ||  ||| |||||||||  ||||||||||||||||||||    
T  32687426 taggggtcatttaaaatttggtccctgtaatcgttaatcctggcaaattgcccttgcaaatattaatcatttaaaatttcgt 32687507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 580
Target Start/End: Original strand, 22245539 - 22245583
Alignment:
Q  536 tgcttacacatcaaaagtttacgcaaacggaccaaaatgccccta 580  Q
    |||| ||||||||||||||||||  |||| |||||||||||||||    
T  22245539 tgctgacacatcaaaagtttacgtgaacgaaccaaaatgccccta 22245583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 521
Target Start/End: Original strand, 23232 - 23381
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||| ||||||||||| || ||||||||| | ||| ||||||| ||||| | || ||||||| |||||| || | | ||||| |||| |||||||||||    
T  23232 gctttgatatgtgtttcgtccctgcaaatatgagtcatttaaaaattggtctatgtatttgttaatcctgtcaatctatccttccaaagtttaatcattt 23331  T
Q  470 aaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaatctgct 521  Q
    ||||||| ||   ||||||| | ||||||||||| ||||||| |||| ||||    
T  23332 aaaatttggt--ttctccccccacttaatcactgccacgtcagtaatttgct 23381  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 434 - 516
Target Start/End: Original strand, 24085839 - 24085919
Alignment:
Q  434 atcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||||||||||||  ||||||||||||  ||||||||| ||| |||||||  | ||||||||||||||||||||||||    
T  24085839 atcctgacattttgtcctgccaaaatttaatcgcttaaaattttgtccctctccc--cacttaatcactgtcacgtcactaat 24085919  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 366 - 514
Target Start/End: Complemental strand, 9500028 - 9499883
Alignment:
Q  366 taaagcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatc 465  Q
    |||||||||| |||||||||  ||  | ||||||||||||| ||||||  |||||  || |||| || |||||||||||||  |||  ||||||||||||    
T  9500028 taaagcttttgtatgtgtttagtccttacaaataggggtcgattaaaaaatggttcatgtatttcttaatcctgacattttaccctcccaaaatttaatc 9499929  T
Q  466 atttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcacta 514  Q
    |||||||||||  || ||   ||| | ||||||||||||||||||||||    
T  9499928 atttaaaatttgatccct---cccccacttaatcactgtcacgtcacta 9499883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 371 - 516
Target Start/End: Complemental strand, 22890420 - 22890277
Alignment:
Q  371 cttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattta 470  Q
    |||||||||||||||  || ||||||||||||||| |||||||  ||||  ||| |||  || ||| |||||||||  ||| ||||||| |||||| |||    
T  22890420 cttttatatgtgtttagtccctgcaaataggggtcatttaaaacatggtacctgtattccttaatcttgacatttttccctggcaaaatctaatcactta 22890321  T
Q  471 aaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||| ||| |||| ||  | ||||||||||||||| ||||||||    
T  22890320 aaattttgtccctcttcc--cacttaatcactgtcacatcactaat 22890277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 4406081 - 4405943
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  || || ||||||| |||||||| |||||   || ||||||| |||||  || |||  ||||||||  |||||||||||||||||    
T  4406081 atatgtatttcatccttgtaattaggggttgtttaaaaattggtccatgtatttgttaatccttgcaatttacccttgcaatgtttaatcatttaaaatt 4405982  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||| ||  | ||||||||||||||||||||||||    
T  4405981 tcgtccctcttcc--cacttaatcactgtcacgtcactaat 4405943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 13186067 - 13186205
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| ||||| |||||||||| ||||||  || | | | | ||||||||| |||  |||||||   |||||||||||||||||    
T  13186067 atatgtatttcatccttgcaattagggatcgtttaaaaattggttcatgtaatcgctaatcctgacaatttacccttgcattgtttaatcatttaaaatt 13186166  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | ||||||||||| ||||||||||||    
T  13186167 tcgtctctctccc--cacttaatcactgccacgtcactaat 13186205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 16388947 - 16388809
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||| ||||||| ||||||  || | ||| | |||||| || |||  |||||||   |||||||||||||||||    
T  16388947 atatgtatttcatccttgcaattaggggtcatttaaaaattggttcatgtaattgctaatcctggcaatttacccttgcattgtttaatcatttaaaatt 16388848  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | ||||||||||| ||||||||||||    
T  16388847 tcgtccctctccc--cacttaatcactgccacgtcactaat 16388809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 39071683 - 39071821
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||||||||||||||| |||||  ||| | | | | ||||||||| |||  |||||||   |||||||||||||||||    
T  39071683 atatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctgacaatttacccttgcattgtttaatcatttaaaatt 39071782  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | ||||||||||| | ||||||||||    
T  39071783 tcgtccctctccc--cacttaatcactgccgcgtcactaat 39071821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 494 - 580
Target Start/End: Original strand, 9337149 - 9337231
Alignment:
Q  494 ttaatcactgtcacgtcactaatctgcttatgcggcagtgcttgcttacacatcaaaagtttacgcaaacggaccaaaatgccccta 580  Q
    |||||||||| |||||||||||| |||||| | |||||||||     ||||||||||| ||||||  ||||||||||||||||||||    
T  9337149 ttaatcactgccacgtcactaatttgcttacgtggcagtgcta----acacatcaaaactttacgtgaacggaccaaaatgccccta 9337231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 516
Target Start/End: Original strand, 36928508 - 36928621
Alignment:
Q  401 gggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatca 500  Q
    ||||||||||||| ||||| | || | | | | ||||||||| |||  |||||||   |||||||||||||||||||||| |||||||  | ||||||||    
T  36928508 gggtcgtttaaaaattggtctatgtaatcgctaatcctgacaatttacccttgcattgtttaatcatttaaaatttcgtccctctccc--cacttaatca 36928605  T
Q  501 ctgtcacgtcactaat 516  Q
    ||| ||||||||||||    
T  36928606 ctgccacgtcactaat 36928621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 514
Target Start/End: Complemental strand, 2693860 - 2693802
Alignment:
Q  454 caaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcacta 514  Q
    ||||||||||||||||||||||| || |  |||||| | ||||||||||||||||||||||    
T  2693860 caaaatttaatcatttaaaatttggtta--ctccccccacttaatcactgtcacgtcacta 2693802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 392 - 489
Target Start/End: Complemental strand, 23663919 - 23663822
Alignment:
Q  392 tgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccc 489  Q
    ||||| |||||||||||||||| ||||| |||| | | | | |||||| || |||  |||||||   |||||||||||||||||||||| ||||||||    
T  23663919 tgcaattaggggtcgtttaaaaattggtctctgtaatcgctaatcctggcaatttacccttgcattgtttaatcatttaaaatttcgtccctctcccc 23663822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 516
Target Start/End: Complemental strand, 31608849 - 31608796
Alignment:
Q  461 taatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||| |||||||  | ||||||||||| ||||||||||||    
T  31608849 taatcatttaaaatttcgtccctctccc--cacttaatcactgccacgtcactaat 31608796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 508
Target Start/End: Complemental strand, 23698643 - 23698535
Alignment:
Q  398 taggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaa 497  Q
    |||||||||||||||| |||||  ||| | | | | |||||| || |||  |||||||   |||||||||||||||||||||| |||||||  | |||||    
T  23698643 taggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttacccttgcattgtttaatcatttaaaatttcgtccctctccc--cacttaa 23698546  T
Q  498 tcactgtcacg 508  Q
    |||||||||||    
T  23698545 tcactgtcacg 23698535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 486
Target Start/End: Original strand, 31872946 - 31873005
Alignment:
Q  427 tttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctc 486  Q
    |||||| ||||||||| ||| ||||  |||||||||||||||||||||||| || |||||    
T  31872946 tttgttaatcctgacaatttatcctcccaaaatttaatcatttaaaatttcatctctctc 31873005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 516
Target Start/End: Original strand, 35756647 - 35756727
Alignment:
Q  434 atcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||||||| ||| |||||| |   |||||||||||||||||||||| |||||||  | ||||||||||| || |||||||||    
T  35756647 atcctgacaatttatccttgaattgtttaatcatttaaaatttcgtccctctccc--cacttaatcactgccatgtcactaat 35756727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 489
Target Start/End: Original strand, 36325263 - 36325354
Alignment:
Q  398 taggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccc 489  Q
    |||||||||||||||| || ||  ||| | ||||| |||||| || |||  ||||||||   ||||||||||||||||||||| ||||||||    
T  36325263 taggggtcgtttaaaaattcgtccctgtaattgttaatcctggcaatttagccttgcaattgttaatcatttaaaatttcgtccctctcccc 36325354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 2535977 - 2535867
Alignment:
Q  370 gcttttatatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcattt 469  Q
    ||||| |||||| |||| || |||||| |||||||| ||||||| |||||  ||| | | ||| |||||| ||  ||  |||| |||| |||||||||||    
T  2535977 gctttaatatgtatttcgtccctgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcctggcaaattacccttacaaagtttaatcattt 2535878  T
Q  470 aaaatttcgtc 480  Q
    |||||||||||    
T  2535877 aaaatttcgtc 2535867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 488
Target Start/End: Original strand, 20050109 - 20050202
Alignment:
Q  395 aaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctccc 488  Q
    ||||||||||| ||||||| |||||   || |||  || || ||| ||||||| |||  ||||||||||||| ||||||||||||| |||||||    
T  20050109 aaataggggtcatttaaaaattggtccatgtattccttaattctggcattttgccctgccaaaatttaatcacttaaaatttcgtccctctccc 20050202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 488
Target Start/End: Original strand, 11674718 - 11674814
Alignment:
Q  392 tgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctccc 488  Q
    ||||| |||| ||||||||||| || ||  ||| | ||||| |||||| || |||  ||||||||   ||||||||||||||||||||| |||||||    
T  11674718 tgcaattaggcgtcgtttaaaaattcgtccctgtaattgttaatcctggcaatttagccttgcaattgttaatcatttaaaatttcgtccctctccc 11674814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 37984 - 37846
Alignment:
Q  376 atatgtgtttcatctctgcaaataggggtcgtttaaaatttggtttctgaatttgttgatcctgacattttgtccttgcaaaatttaatcatttaaaatt 475  Q
    |||||| |||||||  ||||| |||| ||||||||||| ||||| | || | | | | ||||||||| |||  ||||| |   |||||||||||||||||    
T  37984 atatgtatttcatccttgcaattaggagtcgtttaaaaattggtctttgtaatcgctaatcctgacaatttacccttgtattgtttaatcatttaaaatt 37885  T
Q  476 tcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    ||||| |||||||  | ||||||||||| ||||||||||||    
T  37884 tcgtccctctccc--cacttaatcactgccacgtcactaat 37846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 69055 - 69110
Alignment:
Q  459 tttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcactaat 516  Q
    |||||||||||||||||||||| |||||||  | ||||||||||| ||||||||||||    
T  69055 tttaatcatttaaaatttcgtccctctccc--cacttaatcactgccacgtcactaat 69110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 514
Target Start/End: Complemental strand, 14153 - 14076
Alignment:
Q  434 atcctgacattttgtccttgcaaaatttaatcatttaaaatttcgtcactctcccctcgcttaatcactgtcacgtcacta 514  Q
    ||||||| |||||| |||  ||||||||||||||||||||||| ||| ||   ||| | |||||||| |||||||||||||    
T  14153 atcctgatattttgccctcccaaaatttaatcatttaaaatttggtccct---cccccacttaatcattgtcacgtcacta 14076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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