View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3794_low_20 (Length: 249)
Name: NF3794_low_20
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3794_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 113288 - 113100
Alignment:
| Q |
43 |
aagatgatataaattgttttcatatgttcactcctctccccaccagataatttctatcaaagcaggaggaatgatgtcactatcaattgataatcttggt |
142 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
113288 |
aagatgatataaattgttttcat--gatcactcctctccccaccagataatttctatcaaagcaggaggaatgatgtcactatcaattgataatcttggt |
113191 |
T |
|
| Q |
143 |
gccctatggatgtggggaaactgtccagatcaaagcaaagaaggaatattctcaatagtaagcaatttcactccaacaccagtttgggatt |
233 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
113190 |
gccctatggatgtggggaaactgtccacatcaaagcaaagaaggaatattctcaatagtaagcaatttcactccaacaccagtttgggatt |
113100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 4549797 - 4549835
Alignment:
| Q |
9 |
ataaatgtttatgtgcaagctatttctataacaaaagat |
47 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
4549797 |
ataaatgcttatgtacaagctatttctataacaaaagat |
4549835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 5756809 - 5756779
Alignment:
| Q |
25 |
aagctatttctataacaaaagatgatataaa |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5756809 |
aagctatttctataacaaaagatgatataaa |
5756779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 6074421 - 6074451
Alignment:
| Q |
25 |
aagctatttctataacaaaagatgatataaa |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6074421 |
aagctatttctataacaaaagatgatataaa |
6074451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 51294150 - 51294086
Alignment:
| Q |
99 |
tcaaagcaggaggaatgatgtcactatcaattgataatcttggtgccctatggatgtggggaaac |
163 |
Q |
| |
|
|||||||||||||||||||||| || | |||||||||| || |||||||||||||||||||| |
|
|
| T |
51294150 |
tcaaagcaggaggaatgatgtctctggctattgataatcgcggaaccctatggatgtggggaaac |
51294086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 43116562 - 43116529
Alignment:
| Q |
14 |
tgtttatgtgcaagctatttctataacaaaagat |
47 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
43116562 |
tgtttatgtgtaagctatttctataacaaaagat |
43116529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 3169387 - 3169336
Alignment:
| Q |
6 |
catataaatgtttatgtgcaagctatttctataacaaaagatgatataaatt |
57 |
Q |
| |
|
||||||| || ||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
3169387 |
catataagtgcttatgtgtaacctatttctataacaaaagatgaaataaatt |
3169336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 5563651 - 5563693
Alignment:
| Q |
25 |
aagctatttctataacaaaagatgatataaattgttttcatat |
67 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
5563651 |
aagctatttctataacaaaagataaaataaattattttcatat |
5563693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 10296366 - 10296400
Alignment:
| Q |
11 |
aaatgtttatgtgcaagctatttctataacaaaag |
45 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10296366 |
aaatgtttatgtgtaagctatttctataacaaaag |
10296400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 29699182 - 29699223
Alignment:
| Q |
6 |
catataaatgtttatgtgcaagctatttctataacaaaagat |
47 |
Q |
| |
|
|||||||||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
29699182 |
catataaatgcttatgtacaagttatttctataacaaaagat |
29699223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University