View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3794_low_22 (Length: 248)

Name: NF3794_low_22
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3794_low_22
NF3794_low_22
[»] chr5 (8 HSPs)
chr5 (1-139)||(18244404-18244543)
chr5 (118-232)||(18244543-18244650)
chr5 (145-231)||(10591906-10591992)
chr5 (145-218)||(3741106-3741179)
chr5 (145-232)||(2804557-2804643)
chr5 (175-230)||(30785063-30785118)
chr5 (176-220)||(22188083-22188127)
chr5 (142-194)||(28023556-28023608)
[»] chr7 (13 HSPs)
chr7 (145-232)||(8839356-8839443)
chr7 (145-231)||(29059784-29059870)
chr7 (144-232)||(13254176-13254264)
chr7 (144-227)||(19477329-19477412)
chr7 (144-229)||(7265391-7265476)
chr7 (174-231)||(31492111-31492168)
chr7 (144-227)||(28537368-28537451)
chr7 (145-220)||(46373652-46373727)
chr7 (157-232)||(27484124-27484199)
chr7 (147-197)||(5546679-5546729)
chr7 (147-229)||(7190437-7190519)
chr7 (144-210)||(46567655-46567721)
chr7 (145-210)||(38304970-38305035)
[»] chr8 (14 HSPs)
chr8 (143-232)||(36994575-36994664)
chr8 (144-232)||(12958160-12958248)
chr8 (144-231)||(2743911-2743998)
chr8 (157-232)||(13468820-13468895)
chr8 (144-206)||(13005770-13005832)
chr8 (145-230)||(4125101-4125186)
chr8 (175-232)||(19715801-19715858)
chr8 (145-210)||(33404379-33404444)
chr8 (147-227)||(4321584-4321664)
chr8 (175-232)||(15682938-15682995)
chr8 (145-198)||(39086797-39086850)
chr8 (174-219)||(44705680-44705725)
chr8 (148-228)||(23981552-23981632)
chr8 (156-232)||(35206990-35207066)
[»] chr4 (10 HSPs)
chr4 (141-232)||(38766064-38766155)
chr4 (143-232)||(13686578-13686667)
chr4 (147-219)||(7096077-7096149)
chr4 (144-231)||(31307142-31307229)
chr4 (145-233)||(11140436-11140524)
chr4 (144-232)||(35972321-35972409)
chr4 (145-230)||(14854584-14854669)
chr4 (143-198)||(22189497-22189552)
chr4 (144-227)||(45994500-45994583)
chr4 (175-231)||(35334174-35334230)
[»] chr1 (12 HSPs)
chr1 (144-219)||(17600586-17600661)
chr1 (175-232)||(21774612-21774669)
chr1 (145-228)||(16756061-16756144)
chr1 (144-227)||(36982333-36982416)
chr1 (145-231)||(45806215-45806301)
chr1 (175-232)||(52957423-52957480)
chr1 (144-232)||(22022098-22022186)
chr1 (147-225)||(10840998-10841076)
chr1 (145-227)||(9639631-9639713)
chr1 (178-232)||(32883645-32883699)
chr1 (148-210)||(35692467-35692529)
chr1 (144-204)||(14500361-14500421)
[»] chr6 (10 HSPs)
chr6 (145-230)||(25084013-25084098)
chr6 (174-228)||(21029062-21029116)
chr6 (148-232)||(423637-423721)
chr6 (148-227)||(278374-278453)
chr6 (175-230)||(15614650-15614705)
chr6 (144-227)||(21910183-21910266)
chr6 (143-232)||(12411125-12411214)
chr6 (145-225)||(5944821-5944901)
chr6 (148-214)||(8507136-8507202)
chr6 (173-231)||(28099250-28099308)
[»] chr2 (15 HSPs)
chr2 (145-230)||(42745193-42745278)
chr2 (148-232)||(993736-993820)
chr2 (144-230)||(12133307-12133393)
chr2 (143-230)||(5394374-5394461)
chr2 (145-227)||(31579309-31579391)
chr2 (145-231)||(44732649-44732735)
chr2 (145-232)||(28365928-28366015)
chr2 (156-230)||(13154000-13154074)
chr2 (145-231)||(37568803-37568889)
chr2 (175-227)||(18105442-18105494)
chr2 (147-201)||(7020464-7020518)
chr2 (180-230)||(14121959-14122009)
chr2 (144-197)||(33756955-33757008)
chr2 (147-227)||(3772623-3772703)
chr2 (152-232)||(34483448-34483527)
[»] chr3 (12 HSPs)
chr3 (145-232)||(25224678-25224765)
chr3 (145-230)||(48204388-48204473)
chr3 (144-197)||(38088613-38088666)
chr3 (144-227)||(14352532-14352615)
chr3 (145-210)||(30996062-30996127)
chr3 (167-220)||(54877834-54877887)
chr3 (147-227)||(22288216-22288296)
chr3 (189-232)||(39950235-39950278)
chr3 (148-210)||(42514586-42514648)
chr3 (175-219)||(2195602-2195646)
chr3 (175-227)||(9651059-9651111)
chr3 (175-227)||(50518634-50518686)
[»] scaffold0182 (1 HSPs)
scaffold0182 (174-231)||(26339-26396)
[»] scaffold0020 (1 HSPs)
scaffold0020 (145-232)||(167834-167919)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 18244404 - 18244543
Alignment:
Q  1 ttatatttacattagtgatgatttcaaagacctaatattgtggccgccatcgcaatttaaaactg-aaaaaatatttttaacttgattcccctatagaaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18244404 ttatatttacattagtgatgatttcaaagacctaatattgtggccgccatcgcaatttaaaactgaaaaaaatatttttaacttgattcccctatagaaa 18244503  T
Q  100 atagaaaaatgataggagtatgttgaatcaactaggtttt 139  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  18244504 atagaaaaatgataggaatatgttgaatcaactaggtttt 18244543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 18244543 - 18244650
Alignment:
Q  118 tatgttgaatcaactaggttttcgtctacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtct 217  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||| ||||||   |||||||||| |||||||||       ||||||||||||||||    
T  18244543 tatgttgaatcaactaggttttcgtttacccaagagcatttagattaaatgacacttgtctcttctaacttaaccaa-------ggtttgaattcagtct 18244635  T
Q  218 tggacatgcagcagc 232  Q
    || ||||||||||||    
T  18244636 tgaacatgcagcagc 18244650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 10591906 - 10591992
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcag 231  Q
    |||||||||| ||||||| |||||  |  |||||||||||| |||||||||||| |||||| |||| ||| ||||| ||||||||||    
T  10591906 acccaagagcacttagatgagatggaacgggtctcttctagattaaccaaggtcctgggttcgaatccagccttgggcatgcagcag 10591992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 3741106 - 3741179
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtctt 218  Q
    ||||||||||| |||||| ||||| | |  ||||||||||||||||||| |||| || ||||||||||||||||    
T  3741106 acccaagagcgtttagatgagatgtcgtgtgtctcttctagcttaaccatggtcgtgagtttgaattcagtctt 3741179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 2804643 - 2804557
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    ||||||||||  |||||| |||||| | |||| |||||||||||||||||||| ||||||| |||| ||  ||||  |||||||||||    
T  2804643 acccaagagcagttagatgagatgaaa-cggtttcttctagcttaaccaaggttttgggttcgaatccaaccttgagcatgcagcagc 2804557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 30785118 - 30785063
Alignment:
Q  175 gtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagca 230  Q
    |||||||||||||||| ||| |||||||||| |||| |||  ||||||||||||||    
T  30785118 gtctcttctagcttaatcaatgtcttgggttcgaatccagctttggacatgcagca 30785063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 22188127 - 22188083
Alignment:
Q  176 tctcttctagcttaaccaaggtcttgggtttgaattcagtcttgg 220  Q
    ||||||||| |||||||||||| |||||||||||| ||| |||||    
T  22188127 tctcttctaacttaaccaaggtattgggtttgaatccagccttgg 22188083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 28023608 - 28023556
Alignment:
Q  142 tctacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaa 194  Q
    ||||||||||||||||||||| |||||  |  | |||||||||||||||||||    
T  28023608 tctacccaagagcgcttagatgagatggaacggatctcttctagcttaaccaa 28023556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 8839443 - 8839356
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||||||||||||||| |||||| |  ||||||||||||||||||||||||| |||||| |||| ||| ||||| |||||||||||    
T  8839443 acccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagc 8839356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 29059784 - 29059870
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcag 231  Q
    |||||||||| ||||||| |||||  |  ||||||||||||||||||||||||| |||||| |||| ||| ||||| ||||||||||    
T  29059784 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcag 29059870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 13254264 - 13254176
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    ||||||||||||||||||| |||||  |  ||||||||||||||||||||||||| || ||| |||| ||| ||| | |||||||||||    
T  13254264 tacccaagagcgcttagatgagatggaacgggtctcttctagcttaaccaaggtcctgagttcgaatccagccttaggcatgcagcagc 13254176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 19477412 - 19477329
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    |||||||||||| |||||| |||||  |  ||||||||||||||||||||||||  ||||||||||| ||| ||||| ||||||    
T  19477412 tacccaagagcgtttagatgagatggaacgggtctcttctagcttaaccaaggttctgggtttgaatccagccttgggcatgca 19477329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 7265476 - 7265391
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagc 229  Q
    |||||||||||| ||| || ||||||||  ||||||||||||||||||||| || ||||||| | ||  |||||||| ||||||||    
T  7265476 tacccaagagcgtttatatgagatgacacgggtctcttctagcttaaccaaagttttgggttcggatctagtcttgggcatgcagc 7265391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 31492111 - 31492168
Alignment:
Q  174 ggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcag 231  Q
    ||||||||||||||||||||||||| |||||| |||| ||| ||||| ||||||||||    
T  31492111 ggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcag 31492168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 28537368 - 28537451
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    ||||||||||||||||||| |||||  |  ||||||||||| ||||| |||||| ||||||| |||| ||| ||||| ||||||    
T  28537368 tacccaagagcgcttagatgagatggaacgggtctcttctaacttaatcaaggttttgggttcgaatccagccttgggcatgca 28537451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 46373652 - 46373727
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttgg 220  Q
    |||||||||| ||||||| |||||||   ||||||||||||||||| |||| || |||||| |||| |||||||||    
T  46373652 acccaagagctcttagatgagatgacgcgggtctcttctagcttaagcaagatcctgggttcgaatccagtcttgg 46373727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 27484199 - 27484124
Alignment:
Q  157 ttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||| ||||||||   |||||||||||||||||||||||| || |||| ||| ||| | ||| |||||||||||    
T  27484199 ttagatgagatgacacaagtctcttctagcttaaccaaggtcctgagtttaaatccagccatgggcatgcagcagc 27484124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 5546679 - 5546729
Alignment:
Q  147 ccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggt 197  Q
    ||||||||||||| || |||||||||  |||||||||||||||| ||||||    
T  5546679 ccaagagcgcttaaatgagatgacataagtctcttctagcttaatcaaggt 5546729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 7190519 - 7190437
Alignment:
Q  147 ccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagc 229  Q
    ||||||||| |||||| |||||  ||   ||||||||||||||||||||||  || ||||||||||||  |||| ||||||||    
T  7190519 ccaagagcgtttagatgagatggaataaatctcttctagcttaaccaaggttatgagtttgaattcagcattgggcatgcagc 7190437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 46567721 - 46567655
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaat 210  Q
    ||||||| | || |||||| ||||||||| ||||| || || ||||| |||||||||||||||||||    
T  46567721 tacccaaaaacgattagatgagatgacataggtcttttttaacttaatcaaggtcttgggtttgaat 46567655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 38305035 - 38304970
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaat 210  Q
    ||||| ||||| |||||||||||| | | | ||||||||| ||||||||||||  |||||||||||    
T  38305035 acccacgagcgtttagattagatgtcgtggatctcttctaacttaaccaaggttctgggtttgaat 38304970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 36994664 - 36994575
Alignment:
Q  143 ctacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||||||||||||||||| ||||| ||   ||||||||||| |||||||||||| |||||| |||| ||| |||||||||||||||||    
T  36994664 ctacccaagagcgcttagataagatggcacatgtctcttctagtttaaccaaggtcctgggttcgaatccagccttggacatgcagcagc 36994575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 12958248 - 12958160
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||||||| |||||||| |||||  |   |||||||||||||||||||||||| ||||||||||| |||  |||| |||||||||||    
T  12958248 tacccaagagtgcttagatgagatggaactagtctcttctagcttaaccaaggtcatgggtttgaatccagcattgggcatgcagcagc 12958160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 2743911 - 2743998
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcag 231  Q
    |||||||||||  |||||| |||||  |  ||||||||||||||||||||||||| |||||| |||| ||| ||||| ||||||||||    
T  2743911 tacccaagagcatttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcag 2743998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 13468895 - 13468820
Alignment:
Q  157 ttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    ||||||||||||  |  ||||||||||||||||||||||||| |||||| |||| ||| ||||| |||| ||||||    
T  13468895 ttagattagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgtagcagc 13468820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 13005832 - 13005770
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggttt 206  Q
    ||||||||||||||||| | ||||| ||   ||||||||||||||| ||||||||||||||||    
T  13005832 tacccaagagcgcttagctgagatgtcacatgtctcttctagcttatccaaggtcttgggttt 13005770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 4125186 - 4125101
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagca 230  Q
    |||||||||| ||||||| |||||  |  ||||||||||||||||||||| ||| |||||| ||||  || ||||| |||||||||    
T  4125186 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaatgtcctgggttcgaatcaagccttgggcatgcagca 4125101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 19715858 - 19715801
Alignment:
Q  175 gtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||| ||||||||||||||||||| |||||| |||| ||| ||||| |||||||||||    
T  19715858 gtcttttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagc 19715801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 33404444 - 33404379
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaat 210  Q
    |||||||||||||||||| ||||||||   ||||||| ||||| |||||| ||| |||||||||||    
T  33404444 acccaagagcgcttagatgagatgacacaagtctcttatagctcaaccaaagtcatgggtttgaat 33404379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 4321664 - 4321584
Alignment:
Q  147 ccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    ||||||| | |||||| ||||||||| | | |||||||||||||  |||||  ||||||||||| ||||||| ||||||||    
T  4321664 ccaagagggtttagatgagatgacatagatttcttctagcttaagtaaggttctgggtttgaatccagtcttagacatgca 4321584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 15682938 - 15682995
Alignment:
Q  175 gtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||||||||||||| ||||||| || ||| |||| ||| ||||| |||||||||||    
T  15682938 gtctcttctagcttaatcaaggtcctgagttcgaatccagccttgggcatgcagcagc 15682995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 39086797 - 39086850
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtc 198  Q
    |||||||||||||||||| |||||  |  || ||||||||||||||||||||||    
T  39086797 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtc 39086850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 44705680 - 44705725
Alignment:
Q  174 ggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttg 219  Q
    |||||||||||| ||||||||||||||||||| |||| ||| ||||    
T  44705680 ggtctcttctagtttaaccaaggtcttgggttcgaatccagccttg 44705725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 23981632 - 23981552
Alignment:
Q  148 caagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcag 228  Q
    ||||||||||||||| ||||||||   ||||||| ||||||||| | |||  ||| || ||||||||  ||||||||||||    
T  23981632 caagagcgcttagatcagatgacacgagtctcttttagcttaactagggttctggattcgaattcagctttggacatgcag 23981552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 35206990 - 35207066
Alignment:
Q  156 cttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    ||||||| |||||| |  ||||||||||| |||||||||| |  |||||| ||||| |  |||||||||||||||||    
T  35206990 cttagatgagatgaaacaggtctcttctaacttaaccaagattctgggttcgaatttaaccttggacatgcagcagc 35207066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 38766064 - 38766155
Alignment:
Q  141 gtctacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||| ||||||||||||||| |||||  |   |||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||    
T  38766064 gtctactcaagagcgcttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggtttgaatccagccttgggcatgcagcagc 38766155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 13686578 - 13686667
Alignment:
Q  143 ctacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||| |||||| |||| ||  ||||| | |||||||||    
T  13686578 ctacccaagagcgcttagatgagatggcatgggtctcttcttgcttaaccaaggtcctgggttcgaatccatccttgggcgtgcagcagc 13686667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 7096077 - 7096149
Alignment:
Q  147 ccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttg 219  Q
    |||||| ||||||||| ||||||||  ||| |||||||||||||||||||| |||||||||||| ||||||||    
T  7096077 ccaagaacgcttagatgagatgacacaggtttcttctagcttaaccaaggttttgggtttgaatacagtcttg 7096149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 31307229 - 31307142
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcag 231  Q
    ||||||||||| ||||||| |||||  |  ||||||||||||||||||||||||| |||||| |||| ||| ||||| ||||||||||    
T  31307229 tacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcag 31307142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 11140436 - 11140524
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagct 233  Q
    |||||||||||||||||| |||| |||  | | ||||||||||||||||||||| ||| || |||| ||| ||||| ||||||||||||    
T  11140436 acccaagagcgcttagataagataacacggctatcttctagcttaaccaaggtcctggtttcgaatccagccttgggcatgcagcagct 11140524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 35972321 - 35972409
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    ||||||||||||||||||| |||||  |  || ||||||||||||||||||||||||||||| |||| ||| | ||| ||| |||||||    
T  35972321 tacccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaaggtcttgggttcgaatccagccatgggcatacagcagc 35972409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 14854584 - 14854669
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagca 230  Q
    |||||||||||||||||| |||||  |  | ||||||||||||||||||||||  |||||| |||| ||| ||||| |||||||||    
T  14854584 acccaagagcgcttagatgagatggaacggttctcttctagcttaaccaaggttctgggttcgaatccagccttgggcatgcagca 14854669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 22189552 - 22189497
Alignment:
Q  143 ctacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtc 198  Q
    |||| ||||||| ||||||| |||||||||  ||||||||||||||||||||||||    
T  22189552 ctactcaagagcacttagatgagatgacatgagtctcttctagcttaaccaaggtc 22189497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 45994500 - 45994583
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    |||||||||||| |||||| |||||  |  ||||||||||||||||||||||||| ||| || |||| ||| ||||| ||||||    
T  45994500 tacccaagagcgtttagatgagatggaacaggtctcttctagcttaaccaaggtcctggattcgaatccagccttgggcatgca 45994583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 35334230 - 35334174
Alignment:
Q  175 gtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcag 231  Q
    |||||||||||||||||||||||  | |||| | |||||| ||||| ||||||||||    
T  35334230 gtctcttctagcttaaccaaggttcttggttcgtattcagccttgggcatgcagcag 35334174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 17600661 - 17600586
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttg 219  Q
    ||||||| |||| |||||| ||||||||  |||||||||||||||||||||||||||||||| |||||||| ||||    
T  17600661 tacccaaaagcgtttagatgagatgacacgggtctcttctagcttaaccaaggtcttgggttagaattcagccttg 17600586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 21774612 - 21774669
Alignment:
Q  175 gtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||||||||||||| |||||| ||||||| |||| |||||||||||||||||||||    
T  21774612 gtctcttctagcttaatcaaggttttgggttcgaatccagtcttggacatgcagcagc 21774669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 16756061 - 16756144
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcag 228  Q
    |||||||||||||||||| |||||  |  | ||||||||||||||||||||||  |||||||||||||||  |||| |||||||    
T  16756061 acccaagagcgcttagatgagatggaacggatctcttctagcttaaccaaggttctgggtttgaattcagcattgggcatgcag 16756144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 36982333 - 36982416
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    |||| ||||| | |||||| ||||||||  |||||||||||| ||||||||||||| ||||| |||||||| ||| ||||||||    
T  36982333 tacctaagagagtttagatgagatgacacaggtctcttctagtttaaccaaggtctcgggttcgaattcagccttagacatgca 36982416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 45806215 - 45806301
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcag 231  Q
    ||||| |||||||||||| ||||   |  ||||||||||| ||||||||||||| || ||| |||||||||||||| ||||||||||    
T  45806215 acccaggagcgcttagatgagatagaacgggtctcttctatcttaaccaaggtcctgagttcgaattcagtcttgggcatgcagcag 45806301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 52957423 - 52957480
Alignment:
Q  175 gtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    ||||||| |||  ||||||||||||||||||||||||||||||| | |||||||||||    
T  52957423 gtctcttttagtataaccaaggtcttgggtttgaattcagtcttaggcatgcagcagc 52957480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 22022098 - 22022186
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||||||||| |||||| |||||  |  |||||||||||||||||| |||||  |||||| |||| ||| ||||| |||||||||||    
T  22022098 tacccaagagcgtttagatgagatggaacaggtctcttctagcttaactaaggttgtgggttcgaatccagccttgggcatgcagcagc 22022186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 10840998 - 10841076
Alignment:
Q  147 ccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatg 225  Q
    |||||||||||||||| |||||| |  ||||||||||| |||||||||| | |||||||  ||||||| ||||| ||||    
T  10840998 ccaagagcgcttagatgagatgaaacaggtctcttctatcttaaccaagattttgggttcaaattcagccttgggcatg 10841076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 9639713 - 9639631
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    ||||||||||||||| || ||||||||   |||||||| ||||||||||  || ||||||||||||  || ||||| ||||||    
T  9639713 acccaagagcgcttacatgagatgacacatgtctcttcaagcttaaccagtgttttgggtttgaatctagccttggtcatgca 9639631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 32883699 - 32883645
Alignment:
Q  178 tcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||||||||||||||| | ||||||| |||| |||  ||||||||||||||||    
T  32883699 tcttctagcttaaccaagattttgggttcgaatccagcattggacatgcagcagc 32883645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 35692467 - 35692529
Alignment:
Q  148 caagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaat 210  Q
    ||||||||||||||| ||||| ||| ||||| |||||| |||||||| |||||| ||| ||||    
T  35692467 caagagcgcttagatgagatggcatgggtcttttctagtttaaccaatgtcttgagttcgaat 35692529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 14500421 - 14500361
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggt 204  Q
    |||||||||| ||||||||  ||||  |  ||||||||||||||||||||||||| |||||    
T  14500421 tacccaagagtgcttagatgcgatggaacgggtctcttctagcttaaccaaggtcctgggt 14500361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 25084013 - 25084098
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagca 230  Q
    |||||||| | ||||||| ||||||||   |||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||    
T  25084013 acccaagaacacttagatgagatgacacaagtctcttctagcttaatcaaagtcttgagttcgaattcagtcttggacatgcagca 25084098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 21029116 - 21029062
Alignment:
Q  174 ggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcag 228  Q
    |||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||    
T  21029116 ggtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgcag 21029062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 423637 - 423721
Alignment:
Q  148 caagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    ||||||||||||||| |||||  |  | |||||||||| ||||||||||| |||||||||||| ||| ||||| ||||| |||||    
T  423637 caagagcgcttagatgagatggaacagatctcttctagtttaaccaaggttttgggtttgaatccagccttgggcatgctgcagc 423721  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 278374 - 278453
Alignment:
Q  148 caagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    |||||||| |||||| ||||||||   ||||||||||||||||| ||||||||| |||||||| |||  |||| ||||||    
T  278374 caagagcgtttagatgagatgacacgagtctcttctagcttaactaaggtcttgagtttgaatccagctttgggcatgca 278453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 15614705 - 15614650
Alignment:
Q  175 gtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagca 230  Q
    |||||||||| ||||||||| ||| |||||| ||||||||||||||||||| ||||    
T  15614705 gtctcttctaacttaaccaatgtcatgggttcgaattcagtcttggacatgtagca 15614650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 21910183 - 21910266
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    |||||||||||| |||||| |||||| |   ||||||||||||||||||||| || |||||| |||| ||| ||||| ||||||    
T  21910183 tacccaagagcgtttagatgagatgaaacaagtctcttctagcttaaccaagatcctgggttcgaatccagccttgggcatgca 21910266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 12411125 - 12411214
Alignment:
Q  143 ctacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    ||||| ||||| |||||||| |||||  |  ||||||||||| ||||||||||||| || ||| |||| ||| ||||| |||||||||||    
T  12411125 ctacctaagagtgcttagatgagatggaacaggtctcttctaacttaaccaaggtcctgagttcgaatccagccttgggcatgcagcagc 12411214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 5944821 - 5944901
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatg 225  Q
    ||||||||| ||||| || |||||| |  |||||||| || ||||||||||||| || ||| |||||||||||| ||||||    
T  5944821 acccaagagtgcttatataagatgatacgggtctcttttaacttaaccaaggtcctgagttcgaattcagtctttgacatg 5944901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 8507202 - 8507136
Alignment:
Q  148 caagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcag 214  Q
    |||||||| |||||| |||||||| || | |||||||||||||  ||||| ||||||| ||||||||    
T  8507202 caagagcgtttagatgagatgacaccgatttcttctagcttaattaaggttttgggttcgaattcag 8507136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 28099250 - 28099308
Alignment:
Q  173 cggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcag 231  Q
    |||||||||||| |||||| |||||| |||||| |||| ||| ||||| ||||||||||    
T  28099250 cggtctcttctaccttaactaaggtcctgggttcgaatccagccttgggcatgcagcag 28099308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 42745278 - 42745193
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagca 230  Q
    |||||||||||||||||| |||||  |  |||||||| ||||||||||||||||||||||| |||| ||| ||||| |||||||||    
T  42745278 acccaagagcgcttagatgagatggaacgggtctcttatagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagca 42745193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 993736 - 993820
Alignment:
Q  148 caagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    ||||||||||||||| ||||||||   ||||||| |||||||||||||||| |||||| |||||||  ||||| |||||||||||    
T  993736 caagagcgcttagatgagatgacacgtgtctcttatagcttaaccaaggtcctgggttcgaattcaaccttgggcatgcagcagc 993820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 12133393 - 12133307
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagca 230  Q
    ||||||||||||||||||| |||||  |   |||||||||||||||| ||||||| |||||| |||| ||| |||||||||||||||    
T  12133393 tacccaagagcgcttagatgagatggaacgagtctcttctagcttaatcaaggtcatgggttcgaatccagccttggacatgcagca 12133307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 5394374 - 5394461
Alignment:
Q  143 ctacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagca 230  Q
    ||||| |||||||||||||| |||||  |   |||||||||||||||||||||||| |||||| |||| ||| ||||| |||||||||    
T  5394374 ctaccaaagagcgcttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagca 5394461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 31579391 - 31579309
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    |||||||||| ||||||| |||||  |  ||||||||||||||||| |||||||||||||| |||| ||| ||||| ||||||    
T  31579391 acccaagagcacttagatgagatgtaacgggtctcttctagcttaatcaaggtcttgggttcgaatccagccttgggcatgca 31579309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 44732735 - 44732649
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcag 231  Q
    |||||||||| ||||||| |||||  |  |||||||| |||||||||||||||| |||||| |||| ||| ||||| ||||||||||    
T  44732735 acccaagagcacttagatgagatggaacgggtctcttatagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcag 44732649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 28365928 - 28366015
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||||||||||||||| |||||  |   |||||||||| ||||||||||||| || ||| |||| ||| ||||| |||||||||||    
T  28365928 acccaagagcgcttagatgagatggaacgcgtctcttctaacttaaccaaggtcgtgagttcgaatgcagccttgggcatgcagcagc 28366015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 13154074 - 13154000
Alignment:
Q  156 cttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagca 230  Q
    ||||||| |||||||||  |||||||||| ||||||| | || ||| |||||||| |||||||||||| ||||||    
T  13154074 cttagatgagatgacataagtctcttctaacttaacccaagttttgagtttgaatacagtcttggacacgcagca 13154000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 37568889 - 37568803
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcag 231  Q
    |||||||||| ||||||| |||||  |  ||| ||||||||||||||||||||| |||||| |||| ||| ||| | ||||||||||    
T  37568889 acccaagagcacttagatgagatggaacgggtttcttctagcttaaccaaggtcctgggttcgaatccagccttaggcatgcagcag 37568803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 18105494 - 18105442
Alignment:
Q  175 gtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    |||||||||||||||||||||||| |||||| |||| ||| ||||| ||||||    
T  18105494 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgca 18105442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 7020518 - 7020464
Alignment:
Q  147 ccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttg 201  Q
    ||||||||| |||||| ||||  ||  ||||||||||||||||||||||||||||    
T  7020518 ccaagagcgtttagatgagattgcacgggtctcttctagcttaaccaaggtcttg 7020464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 14122009 - 14121959
Alignment:
Q  180 ttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagca 230  Q
    ||||||| |||||| |||| || ||||||||||||||||| ||||||||||    
T  14122009 ttctagcctaaccagggtcctgagtttgaattcagtcttgaacatgcagca 14121959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 33756955 - 33757008
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggt 197  Q
    ||||||||| | ||||||| ||||||||  ||||||||||||||||| ||||||    
T  33756955 tacccaagaacacttagatgagatgacacgggtctcttctagcttaatcaaggt 33757008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 3772703 - 3772623
Alignment:
Q  147 ccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    |||||||||||||||| ||||||||   ||||||||||  |||||||||||| |  ||| |||| || ||||| |||||||    
T  3772703 ccaagagcgcttagatgagatgacacaagtctcttctaatttaaccaaggtcctaagttcgaatccaatcttgaacatgca 3772623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 34483448 - 34483527
Alignment:
Q  152 agcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    ||||||||||| ||||||||   |||| ||||||||||||||| || |  ||||  |||||||||||||||||||| ||||    
T  34483448 agcgcttagataagatgacacatgtcttttctagcttaaccaaagt-tctggttcaaattcagtcttggacatgcaacagc 34483527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 25224678 - 25224765
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||||||||||||||| |||||| |  ||||||||||||||||||||||||| |||||| ||||  ||| ||||  ||||||||||    
T  25224678 acccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatcaagttttgggaatgcagcagc 25224765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 48204473 - 48204388
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagca 230  Q
    ||||||||| |||||||| |||||  |   ||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||    
T  48204473 acccaagagtgcttagatgagatggaacgagtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagca 48204388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 38088613 - 38088666
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggt 197  Q
    ||||||||||||||||||| |||||| |  ||||||||||||||||||||||||    
T  38088613 tacccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggt 38088666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 14352532 - 14352615
Alignment:
Q  144 tacccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    ||||||||||||||||||| |||||  |   ||||||||||||||||||||| | || |||| |||| ||| ||||||||||||    
T  14352532 tacccaagagcgcttagatgagatggaacaagtctcttctagcttaaccaagatattcggttcgaatccagccttggacatgca 14352615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 30996127 - 30996062
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaat 210  Q
    |||||||||||||||||| |||||  |  ||||||||||| ||||||||||||| |||||| ||||    
T  30996127 acccaagagcgcttagatgagatggaacgggtctcttctatcttaaccaaggtcctgggttcgaat 30996062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 54877834 - 54877887
Alignment:
Q  167 tgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttgg 220  Q
    |||||| ||||||||||| |||||||||||| ||| |||||||||||| |||||    
T  54877834 tgacatgggtctcttctaacttaaccaaggttttgagtttgaattcagccttgg 54877887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 22288216 - 22288296
Alignment:
Q  147 ccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    |||| ||||||||||| |||||||||   ||||||||| ||||||||| ||| || ||| |||||||| |||| |||||||    
T  22288216 ccaaaagcgcttagatgagatgacatgaatctcttctaacttaaccaaagtcctgagttcgaattcagccttgaacatgca 22288296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 39950235 - 39950278
Alignment:
Q  189 aaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||    
T  39950235 aaccaaggtcttgggttagaatccagttttggacatgcagcagc 39950278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 42514586 - 42514648
Alignment:
Q  148 caagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaat 210  Q
    ||||||||||||||| |||||| |   ||||||||||||||||| || |||||||||| ||||    
T  42514586 caagagcgcttagatgagatgaaacgtgtctcttctagcttaactaaagtcttgggttcgaat 42514648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 2195646 - 2195602
Alignment:
Q  175 gtctcttctagcttaaccaaggtcttgggtttgaattcagtcttg 219  Q
    ||||||||||||||||| |||||  || |||||||||||||||||    
T  2195646 gtctcttctagcttaactaaggttctgagtttgaattcagtcttg 2195602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 9651059 - 9651111
Alignment:
Q  175 gtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    ||||||||||  |||| || ||||||||||| |||||||| ||||||||||||    
T  9651059 gtctcttctaatttaatcatggtcttgggttcgaattcagccttggacatgca 9651111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 50518686 - 50518634
Alignment:
Q  175 gtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgca 227  Q
    |||||||||| |||||| || ||| || ||| |||||||||||||||||||||    
T  50518686 gtctcttctaacttaactaatgtcatgtgttcgaattcagtcttggacatgca 50518634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 26339 - 26396
Alignment:
Q  174 ggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcag 231  Q
    ||||||||||||||||||||||||| |||||| |||| ||| ||||| ||||||||||    
T  26339 ggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcag 26396  T

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Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 167834 - 167919
Alignment:
Q  145 acccaagagcgcttagattagatgacatcggtctcttctagcttaaccaaggtcttgggtttgaattcagtcttggacatgcagcagc 232  Q
    |||||||||||||||||| |||||| |  ||||||||||||||||| |||||||  |||||  ||| ||| ||||| |||||||||||    
T  167834 acccaagagcgcttagatgagatgaaacgggtctcttctagcttaatcaaggtc--gggttcaaatccagccttgggcatgcagcagc 167919  T

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