View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3794_low_3 (Length: 525)
Name: NF3794_low_3
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3794_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Complemental strand, 6611795 - 6611300
Alignment:
| Q |
18 |
tcattcggttggtagaaaaggaaaaccaagaatacgatgagagggagagacaagctcgcaaagaaaagaaacttgccaaggttagtttctctctgtttat |
117 |
Q |
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| T |
6611795 |
tcattcggttggtagaaaaggaaaaccaagaatacgatgagagggagagacaagctcgcaaagaaaagaaacttgccaaggttagtttctctctgtttat |
6611696 |
T |
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| Q |
118 |
ccacaacaactggttgctaatattgtatccattgt--atttttctcgtactcaagttttacaatatttcagaacatgactccgacaaagcgggctttggc |
215 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6611695 |
ccacaacaactggttgctaatattgtatccattgtgtatttttctcgtactcaagttttacaatatttcagaacatgactccgacaaagcgggctttggc |
6611596 |
T |
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| Q |
216 |
aagacaaactgagagtccatcttctgctaagaagcggaagcagtcaactatggatgattatgctagcacggtatgcatacttactaaatt-atatgcaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6611595 |
aagacaaactgagagtccatcttctgctaagaagcggaagcagtcaactatggatgattatgctagcacggtatgcatacttactaaatttatatgcaat |
6611496 |
T |
|
| Q |
315 |
gcattttttctttcttgctcaagtttctttctgctttcttactgtagcagcttatgctattgttgtaggggaagaggagaaaataaggacgtatgaccta |
414 |
Q |
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| T |
6611495 |
gcattctttctttcttgctcaagtttctttctgctttcttactgaagcagcttatgctattgttgtaggggaagaggagaaaataaggacgtatgaccta |
6611396 |
T |
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| Q |
415 |
aattgcaaaggggaggttgggttttaaaagccttggcaattttgatggtcctagacataaagactgatgaacagtcttgccttccatagtcctagg |
510 |
Q |
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| T |
6611395 |
aattgcaaaggggaggttgggttttaaaagccttggcaattttgatggtcctagacataaagactgatgaccagtcttgccttccatagtcctagg |
6611300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 49259473 - 49259549
Alignment:
| Q |
18 |
tcattcggttggtagaaaaggaaaaccaagaatacgatgagagggagagacaagctcgcaaagaaaagaaacttgcc |
94 |
Q |
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||||||| |||||||| |||||||| |||||||| ||||| || |||||||||||||| ||||| |||||||||||| |
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| T |
49259473 |
tcattcgtttggtagagaaggaaaatcaagaatatgatgaaagagagagacaagctcgtaaagagaagaaacttgcc |
49259549 |
T |
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