View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3794_low_5 (Length: 502)

Name: NF3794_low_5
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3794_low_5
NF3794_low_5
[»] chr8 (30 HSPs)
chr8 (40-242)||(4350691-4350896)
chr8 (296-469)||(4350465-4350632)
chr8 (71-239)||(34141959-34142127)
chr8 (71-259)||(22930256-22930444)
chr8 (116-259)||(13580364-13580507)
chr8 (115-249)||(26835610-26835744)
chr8 (122-254)||(28376643-28376774)
chr8 (72-249)||(22486611-22486787)
chr8 (168-259)||(13236214-13236305)
chr8 (116-259)||(9191180-9191317)
chr8 (1-63)||(4350930-4350992)
chr8 (157-244)||(35481023-35481111)
chr8 (173-249)||(43872544-43872620)
chr8 (143-254)||(31277900-31278007)
chr8 (84-173)||(13236111-13236201)
chr8 (195-249)||(21347520-21347574)
chr8 (169-238)||(18987198-18987267)
chr8 (131-259)||(31383469-31383597)
chr8 (116-226)||(32646618-32646726)
chr8 (137-259)||(12181824-12181942)
chr8 (137-259)||(12426252-12426370)
chr8 (302-333)||(13580289-13580320)
chr8 (184-259)||(41849429-41849504)
chr8 (112-208)||(4311516-4311613)
chr8 (296-341)||(34142212-34142257)
chr8 (137-254)||(7255401-7255519)
chr8 (124-156)||(24606773-24606805)
chr8 (175-247)||(26801891-26801962)
chr8 (122-158)||(32349322-32349358)
chr8 (122-158)||(32365983-32366019)
[»] chr4 (29 HSPs)
chr4 (72-259)||(23869983-23870170)
chr4 (117-249)||(36071573-36071705)
chr4 (72-254)||(29118407-29118590)
chr4 (72-249)||(7853231-7853408)
chr4 (74-249)||(3643161-3643334)
chr4 (96-241)||(2113799-2113944)
chr4 (117-226)||(15986909-15987018)
chr4 (101-259)||(12320368-12320527)
chr4 (123-221)||(4596503-4596601)
chr4 (122-259)||(5627482-5627614)
chr4 (142-259)||(43515863-43515980)
chr4 (137-249)||(7102144-7102255)
chr4 (112-211)||(55147880-55147979)
chr4 (138-249)||(35372126-35372230)
chr4 (158-211)||(40807924-40807977)
chr4 (137-243)||(41442475-41442578)
chr4 (76-164)||(55236220-55236309)
chr4 (133-241)||(25779666-25779774)
chr4 (122-190)||(47059676-47059744)
chr4 (122-190)||(47082058-47082126)
chr4 (170-228)||(29369934-29369992)
chr4 (136-241)||(53178749-53178852)
chr4 (131-180)||(38087654-38087703)
chr4 (116-180)||(6137184-6137248)
chr4 (122-166)||(25790449-25790493)
chr4 (134-241)||(46443812-46443919)
chr4 (196-249)||(55147686-55147739)
chr4 (116-156)||(28477202-28477242)
chr4 (201-241)||(40807870-40807910)
[»] chr6 (25 HSPs)
chr6 (73-254)||(12174257-12174438)
chr6 (133-244)||(9815693-9815804)
chr6 (84-229)||(13229255-13229401)
chr6 (72-259)||(35121953-35122144)
chr6 (96-259)||(31787777-31787938)
chr6 (134-254)||(34573197-34573319)
chr6 (77-249)||(10668897-10669066)
chr6 (137-241)||(34540884-34540988)
chr6 (188-259)||(33344873-33344944)
chr6 (122-218)||(34969382-34969478)
chr6 (122-224)||(33607102-33607204)
chr6 (100-180)||(4337976-4338056)
chr6 (138-238)||(31153664-31153764)
chr6 (189-244)||(34329844-34329899)
chr6 (135-213)||(3359547-3359625)
chr6 (100-163)||(33344760-33344823)
chr6 (128-225)||(33871052-33871145)
chr6 (133-190)||(6274005-6274063)
chr6 (297-331)||(31787975-31788009)
chr6 (111-259)||(11274532-11274675)
chr6 (117-187)||(31236971-31237045)
chr6 (117-187)||(31246347-31246421)
chr6 (184-228)||(7544970-7545014)
chr6 (302-338)||(33344988-33345024)
chr6 (302-338)||(35121874-35121910)
[»] chr7 (28 HSPs)
chr7 (114-259)||(35812592-35812738)
chr7 (71-244)||(21129348-21129521)
chr7 (154-249)||(26912345-26912440)
chr7 (75-244)||(9429358-9429526)
chr7 (110-259)||(26914349-26914497)
chr7 (175-259)||(3351119-3351203)
chr7 (138-244)||(3940672-3940778)
chr7 (72-249)||(21828097-21828273)
chr7 (148-259)||(42335951-42336062)
chr7 (131-244)||(40351788-40351902)
chr7 (104-241)||(13431688-13431825)
chr7 (122-226)||(33480529-33480633)
chr7 (143-235)||(12177813-12177907)
chr7 (137-244)||(22318685-22318791)
chr7 (71-179)||(15134537-15134645)
chr7 (150-259)||(26448382-26448495)
chr7 (187-254)||(30095750-30095817)
chr7 (98-180)||(30095845-30095927)
chr7 (170-259)||(15133313-15133402)
chr7 (123-190)||(21292805-21292872)
chr7 (104-178)||(21136094-21136167)
chr7 (122-172)||(37996495-37996545)
chr7 (137-231)||(32982336-32982432)
chr7 (136-187)||(31329665-31329716)
chr7 (183-249)||(48008596-48008661)
chr7 (302-338)||(30095679-30095715)
chr7 (201-241)||(36066177-36066217)
chr7 (117-173)||(49164858-49164914)
[»] chr1 (28 HSPs)
chr1 (75-259)||(1240366-1240554)
chr1 (114-225)||(8246760-8246869)
chr1 (72-259)||(23897908-23898088)
chr1 (131-254)||(33735761-33735884)
chr1 (72-254)||(23935124-23935299)
chr1 (73-244)||(10976139-10976308)
chr1 (116-254)||(29664171-29664307)
chr1 (168-259)||(35405368-35405459)
chr1 (131-239)||(1153751-1153858)
chr1 (162-249)||(15103063-15103150)
chr1 (134-259)||(3265472-3265596)
chr1 (132-226)||(4626570-4626662)
chr1 (136-246)||(16141536-16141645)
chr1 (75-161)||(22667683-22667769)
chr1 (195-244)||(49762471-49762520)
chr1 (74-190)||(45385311-45385427)
chr1 (188-254)||(22667206-22667272)
chr1 (111-254)||(35204230-35204369)
chr1 (73-226)||(34298990-34299147)
chr1 (99-173)||(40859-40933)
chr1 (97-159)||(35405285-35405346)
chr1 (158-211)||(34258917-34258970)
chr1 (147-235)||(35384135-35384224)
chr1 (185-241)||(38742443-38742499)
chr1 (148-216)||(52805908-52805976)
chr1 (122-172)||(9422290-9422340)
chr1 (116-190)||(20756663-20756735)
chr1 (139-187)||(30717893-30717941)
[»] scaffold0531 (1 HSPs)
scaffold0531 (134-244)||(9699-9809)
[»] chr5 (19 HSPs)
chr5 (72-254)||(3193533-3193715)
chr5 (122-240)||(16570521-16570639)
chr5 (113-242)||(12263669-12263800)
chr5 (73-249)||(20870571-20870743)
chr5 (122-249)||(32257701-32257828)
chr5 (136-254)||(502805-502920)
chr5 (105-243)||(3596934-3597071)
chr5 (71-241)||(18600127-18600292)
chr5 (175-243)||(7886634-7886702)
chr5 (136-244)||(16569321-16569429)
chr5 (125-188)||(7887264-7887327)
chr5 (162-249)||(18626684-18626771)
chr5 (137-259)||(25034359-25034480)
chr5 (131-180)||(10325717-10325766)
chr5 (131-241)||(39542405-39542514)
chr5 (297-341)||(20870791-20870835)
chr5 (137-228)||(8934060-8934149)
chr5 (136-178)||(36161044-36161086)
chr5 (304-333)||(25034283-25034312)
[»] chr3 (21 HSPs)
chr3 (72-259)||(11383528-11383716)
chr3 (70-249)||(15670852-15671031)
chr3 (136-259)||(33510103-33510226)
chr3 (129-255)||(2758068-2758194)
chr3 (136-254)||(54417033-54417151)
chr3 (171-259)||(27538791-27538879)
chr3 (107-182)||(27541151-27541226)
chr3 (147-254)||(33682673-33682780)
chr3 (131-223)||(19149892-19149984)
chr3 (71-199)||(52706727-52706855)
chr3 (184-259)||(47000872-47000946)
chr3 (114-254)||(168697-168834)
chr3 (168-259)||(11365079-11365170)
chr3 (111-254)||(17713251-17713390)
chr3 (111-254)||(19014480-19014619)
chr3 (133-219)||(39838466-39838550)
chr3 (116-241)||(8266618-8266744)
chr3 (110-187)||(42417901-42417977)
chr3 (297-341)||(27538709-27538753)
chr3 (162-228)||(7741724-7741790)
chr3 (296-333)||(11383751-11383788)
[»] chr2 (30 HSPs)
chr2 (107-254)||(5163763-5163910)
chr2 (114-244)||(30257801-30257932)
chr2 (136-249)||(28556621-28556734)
chr2 (132-249)||(38561838-38561954)
chr2 (108-241)||(40876949-40877082)
chr2 (134-244)||(28148887-28148996)
chr2 (130-231)||(1241111-1241212)
chr2 (175-244)||(36186631-36186700)
chr2 (122-249)||(17271276-17271406)
chr2 (100-244)||(16547626-16547772)
chr2 (74-157)||(16647942-16648025)
chr2 (139-254)||(18829984-18830100)
chr2 (175-259)||(37912332-37912416)
chr2 (137-228)||(36506909-36507000)
chr2 (171-249)||(16646975-16647053)
chr2 (75-244)||(2887046-2887217)
chr2 (122-225)||(18197324-18197426)
chr2 (189-259)||(4206345-4206415)
chr2 (122-180)||(4206647-4206705)
chr2 (129-187)||(14951642-14951700)
chr2 (115-216)||(15925456-15925559)
chr2 (134-178)||(28226833-28226877)
chr2 (71-163)||(37911367-37911459)
chr2 (130-257)||(35280938-35281068)
chr2 (136-212)||(6621319-6621395)
chr2 (168-244)||(34345961-34346036)
chr2 (114-224)||(38134049-38134159)
chr2 (137-182)||(33819217-33819262)
chr2 (165-241)||(44157246-44157320)
chr2 (124-180)||(34909424-34909480)
[»] scaffold0777 (1 HSPs)
scaffold0777 (75-254)||(5785-5963)
[»] scaffold0001 (1 HSPs)
scaffold0001 (98-228)||(65000-65132)
[»] scaffold0003 (1 HSPs)
scaffold0003 (137-225)||(327934-328020)
[»] scaffold1173 (2 HSPs)
scaffold1173 (188-244)||(380-436)
scaffold1173 (300-332)||(493-525)
[»] scaffold0527 (2 HSPs)
scaffold0527 (202-244)||(1711-1753)
scaffold0527 (202-244)||(9774-9816)
[»] scaffold1702 (1 HSPs)
scaffold1702 (138-239)||(320-421)
[»] scaffold0128 (1 HSPs)
scaffold0128 (138-210)||(18557-18629)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 40 - 242
Target Start/End: Complemental strand, 4350896 - 4350691
Alignment:
Q  40 ttgcatgacatttaagatattttggatgtgttcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  4350896 ttgcatgacatttaagatattttggatgtgttcaggggtggccctgagggcgggcacgaggggcggtagccctgggcaccacttttttagaggcaccaaa 4350797  T
Q  140 attattatttttatttagtagttagtactatatagata---tatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 236  Q
    ||||||||||||||||||||||||||| ||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4350796 attattatttttatttagtagttagtattatatagatatattatttttttttaattcgctttggttaattctattgaaaatatatttttatataactttg 4350697  T
Q  237 attata 242  Q
    ||||||    
T  4350696 attata 4350691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 296 - 469
Target Start/End: Complemental strand, 4350632 - 4350465
Alignment:
Q  296 gggtacaatttattgtttcgtccaggacaccaaaaatcctaggaccagccgtggatctggatgtgttcttaacctttttcttctttcaagtttgggctat 395  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  4350632 gggtacaatttattgtttcgtccaggacacgaaaaatcctaggaccagcc------ctggatgtgttcttaacctttttcttctttcaagtttgggctat 4350539  T
Q  396 ggagcattttgaggacatatgtccccgacccaaactatgtttaacacaagataccttaattttattcatcttga 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4350538 ggagcattttgaggacatatgtccccgacccaaactatgtttaacacaagataccttaattttattcatcttga 4350465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 71 - 239
Target Start/End: Original strand, 34141959 - 34142127
Alignment:
Q  71 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactat 170  Q
    |||||||||||| ||||||| ||| ||||| |||| |||| | ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  34141959 tcaggggtggccctgagggcaggcgcgaggagcggcagcccagggcaccactttgttaggggcaccaaaactattatttttatttagtagttagtactat 34142058  T
Q  171 atagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgatt 239  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  34142059 atagatatatttctttttaatccgctttgattaattctattgaaaatatattttcagataactttgatt 34142127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 71 - 259
Target Start/End: Original strand, 22930256 - 22930444
Alignment:
Q  71 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactat 170  Q
    |||||||| | | ||||||||||| | |||||||  || | | ||||||| ||||| || |||||||||||||| ||||||| ||| |||||||||||||    
T  22930256 tcaggggttgtcctgagggcgggcgcaaggggcgacagtccagggcaccattttttcaggggcaccaaaattataatttttacttaatagttagtactat 22930355  T
Q  171 atagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    |||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||    
T  22930356 atagatatatatctttttaattcgctttgattaattctattgaaaaaatatttttagataactttgattataaatgaatattttacaac 22930444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 116 - 259
Target Start/End: Complemental strand, 13580507 - 13580364
Alignment:
Q  116 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaa 215  Q
    ||||| |||||||| |||||||||||||||||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  13580507 caccatttttttaggggcaccaaaattattatttttacttaatagttagtattatataaatatatttctttttaattcgctttgattaattctattgaaa 13580408  T
Q  216 atatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    ||||||||||| ||||||||| ||||||| |||| |||| ||||    
T  13580407 atatatttttaaataactttggttataaatgaatattttgcaac 13580364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 26835744 - 26835610
Alignment:
Q  115 gcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaa 214  Q
    |||||| |||||||| |||||||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||||||  ||||  ||||||||||||||    
T  26835744 gcaccatttttttaggggcaccaaaattattatttttacttaatagttagtacaatataaatatatttctttttaattttcttttattaattctattgaa 26835645  T
Q  215 aatatatttttagataactttgattataaacgaat 249  Q
    |||||||||||||| ||||||||||||||| ||||    
T  26835644 aatatatttttagagaactttgattataaatgaat 26835610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 122 - 254
Target Start/End: Original strand, 28376643 - 28376774
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 221  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| | | | | ||||||||    
T  28376643 ttttttagcggcaccaaaattattatttttacttagtagttagtactatatagatatatttctttttaattcgttttgattaaatttgtcg-aaatatat 28376741  T
Q  222 ttttagataactttgattataaacgaatgtttt 254  Q
    ||||||||||||| |||| |||| |||| ||||    
T  28376742 ttttagataacttcgattgtaaatgaatatttt 28376774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 22486787 - 22486611
Alignment:
Q  72 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 171  Q
    ||||||||||| ||||||| ||  |||||||||| |||| | |||| || |||||||| || ||||||||||||||| ||| |||||||| | ||| | |    
T  22486787 caggggtggccctgagggcaggtgcgaggggcggcagcccagggcatcatttttttag-ggtaccaaaattattattcttacttagtagtcactacaaaa 22486689  T
Q  172 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    ||||||| ||||||||||||| | |||| |||||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  22486688 tagatatgtttctttttaatttgttttgattaattctattgaaaatatcattttagagaactttgattataaatgaat 22486611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 13236214 - 13236305
Alignment:
Q  168 tatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  13236214 tatatatatatatttctttttaattcgctttgattaattctaatgaaaatatatttttagagaactttgattataaacgaattttttgcaac 13236305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 116 - 259
Target Start/End: Original strand, 9191180 - 9191317
Alignment:
Q  116 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaa 215  Q
    ||||| ||||||||  ||| ||||||||||||||||| ||||||||||      ||||||||||||| |||||||||| ||||| ||||||||||| |||    
T  9191180 caccatttttttaggagcatcaaaattattatttttacttagtagtta------tatagatatatttatttttaattcactttgattaattctattcaaa 9191273  T
Q  216 atatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    ||||||||||||| |||| |||||||||| |||| |||| ||||    
T  9191274 atatatttttagagaactatgattataaatgaatcttttacaac 9191317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4350992 - 4350930
Alignment:
Q  1 gtagctttcattttttccattggtgagaatatcatcatattgcatgacatttaagatattttg 63  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  4350992 gtagctttcattttttccattggtgagaatatcatcatattgtatgatatttaagatattttg 4350930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 35481111 - 35481023
Alignment:
Q  157 gtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaat-atatttttagataactttgattataaa 244  Q
    ||||||||||||||||||||| ||||||| ||||  ||||||   |||||||||||||||| ||||||||||| ||| |||||||||||    
T  35481111 gtagttagtactatatagataaatttcttattaacccgctttcaataattctattgaaaatgatatttttagagaacattgattataaa 35481023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 43872544 - 43872620
Alignment:
Q  173 agatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    ||||||||||||| |||||| |||||  |||||||||||| ||||||||||||| | ||||||||||||||| ||||    
T  43872544 agatatatttcttcttaatttgctttcattaattctattgtaaatatatttttaaagaactttgattataaatgaat 43872620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 31277900 - 31278007
Alignment:
Q  143 attatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat-ttttagataactttgattat 241  Q
    |||||||||||||||||||||||||   ||  ||||||||  |||||| || ||||| ||||||||||||||||||| | ||||||| ||| ||||||||    
T  31277900 attatttttatttagtagttagtac---atgcatatattt--ttttaactcactttgattaattctattgaaaatatttattttagagaaccttgattat 31277994  T
Q  242 aaacgaatgtttt 254  Q
    ||| |||| ||||    
T  31277995 aaatgaatctttt 31278007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 13236111 - 13236201
Alignment:
Q  84 tgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattatta-tttttatttagtagttagtactatata 173  Q
    |||||| ||||| ||||||||  | |||| ||||||| | ||| || |||||||||||||||| |||||| ||||||||||||||||||||    
T  13236111 tgagggtgggcaggaggggcgacaacctagggcaccattgtttaaggggcaccaaaattattattttttacttagtagttagtactatata 13236201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 21347574 - 21347520
Alignment:
Q  195 ctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    ||||| |||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  21347574 ctttgattaattctattgaaaatatatttttaaataaatttgattataaatgaat 21347520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 18987267 - 18987198
Alignment:
Q  169 atatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgat 238  Q
    |||||||||||||||||| |||||   |||| |||||| |||||||| |||||||||||| |||||||||    
T  18987267 atatagatatatttctttgtaattatgtttgattaattatattgaaattatatttttagagaactttgat 18987198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 31383469 - 31383597
Alignment:
Q  131 ggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagata 230  Q
    |||| ||||||||||||||||  ||| |||||| || ||||||  |||| || |||||||||  ||||  |||||| ||||||||||||  |||||| ||    
T  31383469 ggcatcaaaattattattttttcttaatagttaatattatataagtataattatttttaatttcctttaattaattttattgaaaatatggttttagcta 31383568  T
Q  231 actttgattataaacgaatgtttttcaac 259  Q
    ||||||| ||| || |||| |||| ||||    
T  31383569 actttgaatatgaatgaatcttttgcaac 31383597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 32646726 - 32646618
Alignment:
Q  116 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaa 215  Q
    ||||| ||||||| || ||| |||||||||||||||||| |||||| |||| ||| ||||| ||||  |||||||||   |||  |||||| |||| |||    
T  32646726 caccatttttttaaagacactaaaattattatttttattcagtagtgagtattatgtagatgtatt--tttttaattacttttaattaattttattaaaa 32646629  T
Q  216 atatattttta 226  Q
    |||||||||||    
T  32646628 atatattttta 32646618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 12181824 - 12181942
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 236  Q
    |||||||||||||||| |||||| |||||| |||||||| ||||   || |||| | ||||||  ||||| |||||| || ||||||||||| || ||||    
T  12181824 aaaattattatttttacttagtaattagtattatatagaaatat---ttattaaattgctttgactaattatattgacaa-atatttttagagaattttg 12181919  T
Q  237 attataaacgaatgtttttcaac 259  Q
    ||||| || |||| |||| ||||    
T  12181920 attatgaatgaatattttgcaac 12181942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 12426252 - 12426370
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 236  Q
    |||||||||||||||| |||||| |||||| |||||||| ||||   || |||| | ||||||  ||||| |||||| || ||||||||||| || ||||    
T  12426252 aaaattattatttttacttagtaattagtattatatagaaatat---ttattaaattgctttgactaattatattgacaa-atatttttagagaattttg 12426347  T
Q  237 attataaacgaatgtttttcaac 259  Q
    ||||| || |||| |||| ||||    
T  12426348 attatgaatgaatattttgcaac 12426370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 333
Target Start/End: Complemental strand, 13580320 - 13580289
Alignment:
Q  302 aatttattgtttcgtccaggacaccaaaaatc 333  Q
    ||||||||||||||||||||||||||||||||    
T  13580320 aatttattgtttcgtccaggacaccaaaaatc 13580289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 41849429 - 41849504
Alignment:
Q  184 tttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    ||||||| | || ||| |||||||||||||||||||||||||| | ||  |||||||| || |||| |||||||||    
T  41849429 tttttaacttgcattgattaattctattgaaaatatatttttaaagaatcttgattattaatgaatctttttcaac 41849504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 4311613 - 4311516
Alignment:
Q  112 aaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatata-tttctttttaattcgctttggttaattct 208  Q
    ||||||||| ||||| || |||| |||||||||||||| |||||  ||||||||| | |||| || || ||| ||||||| ||| |||| ||||||||    
T  4311613 aaggcaccaatttttgaggggcatcaaaattattatttatatttgatagttagtagtgtatacatgtattttttttttaactcgttttgattaattct 4311516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 34142212 - 34142257
Alignment:
Q  296 gggtacaatttattgtttcgtccaggacaccaaaaatcctaggacc 341  Q
    |||||||||||||||||||||||||  || |||||||| |||||||    
T  34142212 gggtacaatttattgtttcgtccagagcatcaaaaatcttaggacc 34142257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 254
Target Start/End: Original strand, 7255401 - 7255519
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatatttcttttt--aattcgctttggttaattctattgaaaatatatttttagataactt 234  Q
    ||||||| |||||||| ||||| ||||||| |||||| |||| ||| |||||  || | ||||| ||| ||  |||||||||||| |||||||| |||      
T  7255401 aaaattaatatttttacttagtggttagtattatataaatatgtttttttttttaaattgctttagttgatattattgaaaatatgtttttagagaac-a 7255499  T
Q  235 tgattataaacgaatgtttt 254  Q
    |||||||||| |||| ||||    
T  7255500 tgattataaatgaatatttt 7255519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 24606773 - 24606805
Alignment:
Q  124 ttttagaggcaccaaaattattatttttattta 156  Q
    |||||||||||| ||||||||||||||||||||    
T  24606773 ttttagaggcacaaaaattattatttttattta 24606805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 26801891 - 26801962
Alignment:
Q  175 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacga 247  Q
    ||||||||  |||||| || ||||| |||||| |||||||| |||||| ||||| ||| ||||||||||||||    
T  26801891 atatattttgttttaactcactttgattaattatattgaaa-tatattattagagaacattgattataaacga 26801962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 32349322 - 32349358
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagt 158  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  32349322 ttttttacaggcaccaaaattattattttcatttagt 32349358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 32365983 - 32366019
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagt 158  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  32365983 ttttttacaggcaccaaaattattattttcatttagt 32366019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 6e-66; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 23869983 - 23870170
Alignment:
Q  72 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 171  Q
    ||||||||||| ||||||||||| |||||||||  |||| | |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  23869983 caggggtggccctgagggcgggctcgaggggcgacagcccagggcaccacttttttaggggcaccaaaattattatttttacttagtagttagtactata 23870082  T
Q  172 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    ||||||||| | ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  23870083 tagatatatatttttttaattcgttttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaac 23870170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 36071705 - 36071573
Alignment:
Q  117 accacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaa 216  Q
    |||| |||| ||| ||||| |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||    
T  36071705 accatttttctaggggcactaaaattattatttttacttgatagttagtactatatagatatatttctttttaattttctttgattaattcaattgaaaa 36071606  T
Q  217 tatatttttagataactttgattataaacgaat 249  Q
    |||||||||||| ||||||||||||||| ||||    
T  36071605 tatatttttagagaactttgattataaatgaat 36071573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 29118407 - 29118590
Alignment:
Q  72 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 171  Q
    ||||||||||| ||||||||||| ||||||| || |||  | ||||||| |||| | | ||||||||||||||||||||||| ||||||||||||||| |    
T  29118407 caggggtggccctgagggcgggctcgaggggtgggagctcagggcaccatttttattggggcaccaaaattattatttttatgtagtagttagtactaca 29118506  T
Q  172 tagatatatttctttttaattcgc-tttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 254  Q
    ||||||||||||||||||| | || |||  |||||| |||||||||||| |||||| | |||||||||||| || |||| ||||    
T  29118507 tagatatatttctttttaaattgcttttaattaattatattgaaaatatgtttttaaagaactttgattatgaatgaatatttt 29118590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 7853231 - 7853408
Alignment:
Q  72 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 171  Q
    ||||||||||| | |||| ||||  ||| ||||| | |||| |||| || | | ||| |||||||||| |||||||||||| ||||||||||||||||||    
T  7853231 caggggtggccctaagggtgggcgggagaggcggcaacctagggcatcattatcttacaggcaccaaatttattatttttacttagtagttagtactata 7853330  T
Q  172 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    ||||||||| || |||||||||  |||| |||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  7853331 tagatatatatccttttaattcagtttgattaatgatattgaaaatatatttttagaaaactttgattataaatgaat 7853408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 74 - 249
Target Start/End: Complemental strand, 3643334 - 3643161
Alignment:
Q  74 ggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatata 173  Q
    ||||||||| |||||| ||||| |||||||||||||| | ||||||| ||||| || | || ||||||||||||||| | ||||||||||||||||||||    
T  3643334 ggggtggccctgagggtgggcaggaggggcggtagcccatggcaccattttttaag-gacatcaaaattattatttt-acttagtagttagtactatata 3643237  T
Q  174 gatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    ||||||||||||||||||| || ||| |||||| |||||||||  |||||||| | | ||||||| ||||| ||||    
T  3643236 gatatatttctttttaatttgcattgattaattatattgaaaagttatttttaaagagctttgataataaatgaat 3643161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 2113799 - 2113944
Alignment:
Q  96 cgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgc 195  Q
    ||||||| || |||| | ||||||| |||  ||| ||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| ||| | ||    
T  2113799 cgaggggtgggagcccagggcaccattttcataggggcaccaaaattattatctttatgtagtagttagtactacatagatatatttctttctaaattgc 2113898  T
Q  196 tttggttaattctattgaaaatatatttttagataactttgattat 241  Q
    |||| |||||| |||||||||||| |||||| | ||| ||||||||    
T  2113899 tttgattaattatattgaaaatatgtttttaaagaaccttgattat 2113944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 15987018 - 15986909
Alignment:
Q  117 accacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaa 216  Q
    |||| ||||||||| ||| ||||||| |||| |||| ||||||||||||||||||||||||||||| ||||||||  | |||| ||||||||||||||||    
T  15987018 accatttttttagaagcatcaaaattgttatctttaattagtagttagtactatatagatatatttatttttaatgtgttttgattaattctattgaaaa 15986919  T
Q  217 tatattttta 226  Q
    |||| |||||    
T  15986918 tataatttta 15986909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 12320368 - 12320527
Alignment:
Q  101 ggcggtagcctaaggcaccacttttttagaggcaccaaaattatta-tttttatttagtagttagtactatatagatatatttctttttaattcgctttg 199  Q
    |||||||||| | | ||||| | |||||| ||||  |||||||||| |||||| |||||||||||||  |||||||||||| ||||||||||||| ||||    
T  12320368 ggcggtagcccatgacaccattattttaggggcatgaaaattattactttttacttagtagttagtataatatagatatatatctttttaattcggtttg 12320467  T
Q  200 gttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
     |||||| |||||| ||||| |||||| | ||||| ||||||||| |||| |||| ||||    
T  12320468 attaattatattgagaatatttttttaaaaaacttcgattataaatgaatattttgcaac 12320527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 4596601 - 4596503
Alignment:
Q  123 tttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 221  Q
    |||||| ||| | ||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||||| ||||| || ||| ||||||||||||||    
T  4596601 tttttataggtatcaaaattattatttttatttagttgttagtaatatatatatatatttgtttttaattcactttgattgattttattgaaaatatat 4596503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 5627482 - 5627614
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 221  Q
    |||||||| ||||||||||||||||||||||  | |||||||||| |||||| ||     ||||||||||||| |||| |||||| ||||||||| || |    
T  5627482 ttttttaggggcaccaaaattattatttttacatggtagttagtaatatatatat-----tctttttaattcgttttgattaattatattgaaaaaatgt 5627576  T
Q  222 ttttagataactttgattataaacgaatgtttttcaac 259  Q
    ||||| |||||| |||||||||| |||| |||| ||||    
T  5627577 ttttatataactctgattataaatgaatattttgcaac 5627614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 142 - 259
Target Start/End: Complemental strand, 43515980 - 43515863
Alignment:
Q  142 tattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattat 241  Q
    |||| |||||| ||| ||||||||| ||||||||||||| ||||||||||| | |||| |||||| |||| | |||||||| ||||| ||||||||||||    
T  43515980 tattttttttacttattagttagtattatatagatatatatctttttaatttggtttgattaattatattaagaatatattgttagaaaactttgattat 43515881  T
Q  242 aaacgaatgtttttcaac 259  Q
    ||| |||| |||| ||||    
T  43515880 aaatgaatcttttgcaac 43515863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 7102144 - 7102255
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 236  Q
    |||||||||||||||| |  | |||||||| ||||||||||||||| ||||||||| | |||| ||||| |||||||||||| ||||||||| ||||||     
T  7102144 aaaattattatttttagtcggcagttagtattatatagatatattt-tttttaatttgttttgattaatcctattgaaaatacatttttagagaactttt 7102242  T
Q  237 attataaacgaat 249  Q
    |||||||| ||||    
T  7102243 attataaatgaat 7102255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 55147979 - 55147880
Alignment:
Q  112 aaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctatt 211  Q
    ||||||||  || ||||| |||||||||||||||||||||| ||| |||| | ||| | |||||||||||||||||||||| | |||| |||||||||||    
T  55147979 aaggcaccttttctttaggggcaccaaaattattatttttacttaatagtcactacaacatagatatatttctttttaatttgttttgattaattctatt 55147880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 35372230 - 35372126
Alignment:
Q  138 aaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttga 237  Q
    ||||||||||||||| ||||||||||| ||||||||       || ||||||||||  |||| |||||| ||||||||||||||||||||| | |||| |    
T  35372230 aaattattatttttacttagtagttaggactatata-------ttttttttaattcagtttgattaattatattgaaaatatatttttagagagctttaa 35372138  T
Q  238 ttataaacgaat 249  Q
    ||||||||||||    
T  35372137 ttataaacgaat 35372126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 40807977 - 40807924
Alignment:
Q  158 tagttagtactatatagatatatttctttttaattcgctttggttaattctatt 211  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  40807977 tagttagtattatatagatatatttctttttaattcgctttgattaattctatt 40807924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 41442578 - 41442475
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 236  Q
    ||||||||||||||||||||||    ||||| ||||||||||| || |||||||||  ||||| |||||| || ||||||||| |||||||| || ||||    
T  41442578 aaaattattatttttatttagtc---agtacaatatagatatacttatttttaatttactttgattaattatactgaaaatatctttttagagaagtttg 41442482  T
Q  237 attataa 243  Q
    |||||||    
T  41442481 attataa 41442475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 55236220 - 55236309
Alignment:
Q  76 ggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagagg-caccaaaattattatttttatttagtagttag 164  Q
    ||||||||||||||||||| |||||||| | |||| | | ||||| ||||||  ||| || |||||||||||||||||||||||||||||    
T  55236220 ggtggccttgagggcgggcgcgaggggcagcagcccaggacaccattttttttaagggcatcaaaattattatttttatttagtagttag 55236309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 25779774 - 25779666
Alignment:
Q  133 caccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataac 232  Q
    |||||||||||||||||||| ||| |||||||||| ||  | |||||||||||||||  |   |||| |||||| | || ||||||||||| |||| |||    
T  25779774 caccaaaattattatttttacttattagttagtacgatgcacatatatttctttttacctttttttgattaattttgttaaaaatatatttgtagaaaac 25779675  T
Q  233 tttgattat 241  Q
    |||||||||    
T  25779674 tttgattat 25779666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 47059676 - 47059744
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaa 190  Q
    ||||| || |||||||||||||||||||||| ||| ||||||||| |||| | ||||||||||||||||    
T  47059676 tttttaaggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 47059744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 47082126 - 47082058
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaa 190  Q
    ||||| || |||||||||||||||||||||| ||| ||||||||| |||| | ||||||||||||||||    
T  47082126 tttttaaggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 47082058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 29369992 - 29369934
Alignment:
Q  170 tatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttaga 228  Q
    |||||||| |||| ||||||||| | |||| ||||||||||||||||||||||||||||    
T  29369992 tatagataaatttatttttaatttgttttgattaattctattgaaaatatatttttaga 29369934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 53178749 - 53178852
Alignment:
Q  136 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 235  Q
    |||||||||| | |||||||||||||||||| |||||| |||||||  ||||||| |  ||||| |||||| |||||||  ||||||||||   ||||||    
T  53178749 caaaattattttatttatttagtagttagtattatataaatatatt--tttttaacttactttgattaattttattgaatgtatatttttaacgaacttt 53178846  T
Q  236 gattat 241  Q
    ||||||    
T  53178847 gattat 53178852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 38087654 - 38087703
Alignment:
Q  131 ggcaccaaaattattatttttatttagtagttagtactatatagatatat 180  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  38087654 ggcaccaaaattattatttttacttaatagttagtacaatatagatatat 38087703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 6137184 - 6137248
Alignment:
Q  116 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatat 180  Q
    ||||| ||||||||  |||  |||||||||||||||||||||||||||||| |||||| ||||||    
T  6137184 caccatttttttaggagcattaaaattattatttttatttagtagttagtaatatatatatatat 6137248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 25790449 - 25790493
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagta 166  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  25790449 ttttttaggggcaccaaaattattatttttatttaatagttagta 25790493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 46443919 - 46443812
Alignment:
Q  134 accaaaattattatttttatttagtagttagtactatatagatat-atttctttttaattcgctttggttaattctattgaaaatatatttttagataac 232  Q
    ||||||||||||||||| |||||||||||||| | ||||| || | || |  |||||| ||| |||| |||||| ||||  ||||||||||||||||||     
T  46443919 accaaaattattatttt-atttagtagttagttcaatatacatgtcatataattttaactcgttttgattaattttattataaatatatttttagataat 46443821  T
Q  233 tttgattat 241  Q
    |||||||||    
T  46443820 tttgattat 46443812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 55147739 - 55147686
Alignment:
Q  196 tttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    |||| |||||| |||||||||| | |||||||| ||||||||||||||| ||||    
T  55147739 tttgattaattttattgaaaatgtctttttagagaactttgattataaatgaat 55147686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 28477242 - 28477202
Alignment:
Q  116 caccacttttttagaggcaccaaaattattatttttattta 156  Q
    ||||| ||||||||||||| |||||| ||||||||||||||    
T  28477242 caccatttttttagaggcatcaaaataattatttttattta 28477202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 40807910 - 40807870
Alignment:
Q  201 ttaattctattgaaaatatatttttagataactttgattat 241  Q
    ||||||||||| ||||||| |||||||||||| ||||||||    
T  40807910 ttaattctattaaaaatatgtttttagataacattgattat 40807870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 73 - 254
Target Start/End: Original strand, 12174257 - 12174438
Alignment:
Q  73 aggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatat 172  Q
    |||||||||| ||||||| |||| ||||||| ||| |||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  12174257 aggggtggccctgagggcaggcaggaggggcagtaacctagggcaccattttttaagaggcaccaaaattattatttttacttagtagttagtactatat 12174356  T
Q  173 agatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 254  Q
    |||||||||||||||||||||| |||| |||||| |||| |||||||||||||||| |||||| ||| |||| |||| ||||    
T  12174357 agatatatttctttttaattcgttttgattaattatattaaaaatatatttttagagaactttaattgtaaatgaatctttt 12174438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 9815804 - 9815693
Alignment:
Q  133 caccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataac 232  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| |||    
T  9815804 caccaaaattattatttttacttagtagttaatactatatagatatatttctttttaattcgctttgattaactttattgaaaatatatttttagaaaac 9815705  T
Q  233 tttgattataaa 244  Q
    | ||||||||||    
T  9815704 tatgattataaa 9815693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 84 - 229
Target Start/End: Original strand, 13229255 - 13229401
Alignment:
Q  84 tgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttc 183  Q
    |||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||  |||| ||||||| | |||||    
T  13229255 tgagggcgggcaggaggggcggcagcccaaggcaccatttttttagaggcaccaaaattattatttttacttagtagtcggtacaatatagaaaaatttc 13229354  T
Q  184 tttttaattcg-ctttggttaattctattgaaaatatatttttagat 229  Q
    ||||||||| | | ||| ||||||||||||||||||| |||||||||    
T  13229355 tttttaatttgtccttgattaattctattgaaaatatctttttagat 13229401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 72 - 259
Target Start/End: Complemental strand, 35122144 - 35121953
Alignment:
Q  72 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttag---tac- 167  Q
    ||||||| ||| |||||||||||  ||||||||| |||  ||||||||| ||  |||| |||||||||||||||||||||| ||||||||||    ||      
T  35122144 caggggtagccctgagggcgggcttgaggggcggcagcacaaggcaccatttaattaggggcaccaaaattattatttttacttagtagttatatatata 35122045  T
Q  168 tatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    |||||| |||||| | | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  35122044 tatatatatatatatatatttaattcgctttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaac 35121953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 31787777 - 31787938
Alignment:
Q  96 cgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgc 195  Q
    ||||||||||||||| | |||||| ||||||| || |   |||||||||||||| || ||| ||||||||| ||  ||||||||||| ||||||||||||    
T  31787777 cgaggggcggtagcccagggcaccgcttttttggatgt--caaaattattatttgtacttaatagttagtattaagtagatatatttatttttaattcgc 31787874  T
Q  196 tttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| |||| ||||    
T  31787875 tttgattaattctattgaaaatatatttgtagataactttaattataaatgaatattttgcaac 31787938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 134 - 254
Target Start/End: Complemental strand, 34573319 - 34573197
Alignment:
Q  134 accaaaattattatttttatttagtagttagtactatatagatatat--ttctttttaattcgctttggttaattctattgaaaatatatttttagataa 231  Q
    |||||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||| |||| |||||| ||||||||||||||||||| | ||    
T  34573319 accaaaattattatttttatttagtagttaatattatatagatatatatttctttttaattcggtttgattaattttattgaaaatatatttttaaagaa 34573220  T
Q  232 ctttgattataaacgaatgtttt 254  Q
    ||||||||||||| |||| ||||    
T  34573219 ctttgattataaatgaatctttt 34573197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 10669066 - 10668897
Alignment:
Q  77 gtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagat 176  Q
    |||| |||||||| ||||  ||||||| | || | | ||||||| |||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||    
T  10669066 gtggtcttgagggtgggcgggaggggcagcagtccagggcaccatttttttaggggcaccaaaattattatttttacttattagttagtattatatagat 10668967  T
Q  177 atatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    |||| |||||| |||||  |||| |||||| |||||||||||| |||||||| ||| ||||||||||| ||||    
T  10668966 atatatcttttgaattc-atttgattaattatattgaaaatat-tttttaga-aacgttgattataaatgaat 10668897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 34540988 - 34540884
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 236  Q
    |||||||||||||||| |||||| ||| ||||||||||||||||||||| |||| ||| |||| ||| |||||||||||||||||||||| ||||  |||    
T  34540988 aaaattattatttttacttagtaattaatactatatagatatatttcttattaactcgttttgattagttctattgaaaatatatttttaaataatcttg 34540889  T
Q  237 attat 241  Q
    |||||    
T  34540888 attat 34540884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 33344873 - 33344944
Alignment:
Q  188 taattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  33344873 taattcgctttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaac 33344944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 34969382 - 34969478
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaata 218  Q
    |||||||  |||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||  | || |||  |||||||||||||    
T  34969382 ttttttaagggcatcaaaattattatttttacttagtagttggtactatatagatatatttatttttaattctttatgattagatctattgaaaata 34969478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 33607204 - 33607102
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 221  Q
    |||||||| | |||||||||||||||||||||||| |||||| || |||||| |||  ||| |||| || ||  |||| ||||||||||||||||||| |    
T  33607204 ttttttagggacaccaaaattattatttttatttaatagttaatagtatatacataattttattttcaactcattttgattaattctattgaaaatattt 33607105  T
Q  222 ttt 224  Q
    |||    
T  33607104 ttt 33607102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 4338056 - 4337976
Alignment:
Q  100 gggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatat 180  Q
    |||||| || ||| ||||||| | |||||  |||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  4338056 gggcggaagtctagggcaccattattttatgggcaccaaaattattacttttacttagtagttagtactatatatatatat 4337976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 31153764 - 31153664
Alignment:
Q  138 aaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttga 237  Q
    |||||||||| || || | ||||| ||||||||||||||||||||  |||||| ||  |||  |||||| |||||||||||| |||||| ||||||||||    
T  31153764 aaattattatattaatgttgtagtcagtactatatagatatatttaattttaaatccttttaattaattatattgaaaatatgtttttaaataactttga 31153665  T
Q  238 t 238  Q
    |    
T  31153664 t 31153664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 34329899 - 34329844
Alignment:
Q  189 aattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 244  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  34329899 aattcactttgattaattctattgaaaatatatttttagagaactttgcttataaa 34329844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 3359547 - 3359625
Alignment:
Q  135 ccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattga 213  Q
    |||||||||||||||||||| |||| ||  || |||||| ||||||||||||||||| || |||| ||| |||||||||    
T  3359547 ccaaaattattatttttattcagtacttcataatatatacatatatttctttttaatccgttttgattatttctattga 3359625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 33344760 - 33344823
Alignment:
Q  100 gggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagtta 163  Q
    |||||| |||| ||||||||| ||  |||| |||||||||||||||||||||| ||||||||||    
T  33344760 gggcggcagcccaaggcaccatttaattaggggcaccaaaattattatttttacttagtagtta 33344823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 33871145 - 33871052
Alignment:
Q  128 agaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatattttt 225  Q
    ||||||||||||||||||||||||| |   ||||||||| || ||| ||||||||||| |||| |||||||| |||  ||||| |||||||| |||||    
T  33871145 agaggcaccaaaattattatttttact---tagttagta-tacatacatatatttcttcttaactcgctttgattatctctatcgaaaatattttttt 33871052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 6274063 - 6274005
Alignment:
Q  133 caccaaaattattatttttatttagtagttagtactatatagatata-tttctttttaa 190  Q
    |||||||||||||||||| | ||||||||||||| |||||| ||||| |||||||||||    
T  6274063 caccaaaattattattttaacttagtagttagtattatatacatatattttctttttaa 6274005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 31787975 - 31788009
Alignment:
Q  297 ggtacaatttattgtttcgtccaggacaccaaaaa 331  Q
    |||||||||||||||||||||||||||||||||||    
T  31787975 ggtacaatttattgtttcgtccaggacaccaaaaa 31788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 259
Target Start/End: Original strand, 11274532 - 11274675
Alignment:
Q  111 taaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctat 210  Q
    |||| ||||| ||| ||| || || ||||||||||||||||| || ||| |||||  |||||||| ||||   ||||||| | |||||| |||||| |||    
T  11274532 taagacaccattttcttaaagacatcaaaattattatttttactt-gtaattagtgttatatagaaatat---tttttaaattgctttgattaattatat 11274627  T
Q  211 tgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    ||| || ||||||||||| || ||||||||| || |||| |||| ||||    
T  11274628 tgacaa-atatttttagagaattttgattatgaatgaatattttgcaac 11274675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 31237045 - 31236971
Alignment:
Q  117 accacttttttagaggcaccaaaattattatttttatttagtagttagt----actatatagatatatttctttt 187  Q
    |||| |||| ||||||||||||||||||| ||| ||  |||||||||||    ||||||||| ||||||||||||    
T  31237045 accatttttatagaggcaccaaaattattgtttatacgtagtagttagtattaactatataggtatatttctttt 31236971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 31246421 - 31246347
Alignment:
Q  117 accacttttttagaggcaccaaaattattatttttatttagtagttagt----actatatagatatatttctttt 187  Q
    |||| |||| ||||||||||||||||||| ||| ||  |||||||||||    ||||||||| ||||||||||||    
T  31246421 accagttttatagaggcaccaaaattattgtttctacgtagtagttagtactaactatataggtatatttctttt 31246347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 7544970 - 7545014
Alignment:
Q  184 tttttaattcgctttggttaattctattgaaaatatatttttaga 228  Q
    ||||||| ||| |||| |||||||| |||||||||||||||||||    
T  7544970 tttttaactcgttttgtttaattcttttgaaaatatatttttaga 7545014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 33344988 - 33345024
Alignment:
Q  302 aatttattgtttcgtccaggacaccaaaaatcctagg 338  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  33344988 aatttattgtttcgtccagggcaccaaaaatcttagg 33345024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 35121910 - 35121874
Alignment:
Q  302 aatttattgtttcgtccaggacaccaaaaatcctagg 338  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  35121910 aatttattgtttcgtccagggcaccaaaaatcttagg 35121874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 114 - 259
Target Start/End: Original strand, 35812592 - 35812738
Alignment:
Q  114 ggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattga 213  Q
    ||||||| |||||||| |||| ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  35812592 ggcaccatttttttaggggcatcaaaattattatttttacttaataattagtactatatagatatatttctttttaattcgctttgatcaattctattga 35812691  T
Q  214 -aaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
     ||||||||||||||||||||||||||||||| |||| |||| ||||    
T  35812692 taaatatatttttagataactttgattataaatgaatattttgcaac 35812738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 21129521 - 21129348
Alignment:
Q  71 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactat 170  Q
    |||||||||||| |||||| |||| |||||||| | ||   ||||||||| |||||||| || || ||| |||||||| |||||||||||| | ||| |     
T  21129521 tcaggggtggccgtgagggtgggcgcgaggggcagaagttcaaggcaccatttttttaggggtactaaatttattattcttatttagtagtcactacaaa 21129422  T
Q  171 atagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 244  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||| || ||||||||||||    
T  21129421 atagatatatttctttttaatttggtttgattaattctattgaaaatatttttttagagaattttgattataaa 21129348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 26912345 - 26912440
Alignment:
Q  154 ttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||| ||||    
T  26912345 ttagtagttagtactatatagatatatttctttttaattcgctttgattaattctattcaagatatatttttagataactttgattacaaatgaat 26912440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 75 - 244
Target Start/End: Complemental strand, 9429526 - 9429358
Alignment:
Q  75 gggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatag 174  Q
    |||||||| |||||| |||||  |||| || || || ||| || || |||||||| ||||||||||||| |||||||||||| ||||||||| ||||||     
T  9429526 gggtggccctgagggtgggcagaagggacgataacccaagacatcatttttttaggggcaccaaaattagtatttttatttaatagttagtattatataa 9429427  T
Q  175 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 244  Q
    |||||||||||||||  ||| |||| ||||||||||||||||||| | |||| | ||||| |||||||||    
T  9429426 atatatttctttttatctcgttttgattaattctattgaaaatat-tatttaaagaacttcgattataaa 9429358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 26914497 - 26914349
Alignment:
Q  110 ctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattcta 209  Q
    |||||| |||| |||||||| || | ||||||||||||||||| ||||||||||||| |||||| |||| |||  |||||||||| |||| |||||| ||    
T  26914497 ctaaggtaccatttttttag-ggtatcaaaattattatttttacttagtagttagtattatatacatatgtttacttttaattcgttttgattaattata 26914399  T
Q  210 ttgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    ||||||||||||||||| ||||| || |||||||| |||| |||| ||||    
T  26914398 ttgaaaatatatttttaaataacgttaattataaatgaatattttgcaac 26914349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 3351119 - 3351203
Alignment:
Q  175 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| |||| ||||    
T  3351119 atatatttctttttaattcgctttgattaattctattgaaattatatttttagataactttgattataaatgaatattttacaac 3351203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 3940778 - 3940672
Alignment:
Q  138 aaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttga 237  Q
    ||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||  ||||| ||||||||||| ||||||| |||||| | ||||||||    
T  3940778 aaattattatttttacttagtagtaagtataatatagatatatttctttttaatttactttgattaattctatttaaaatatctttttaaagaactttga 3940679  T
Q  238 ttataaa 244  Q
    |||||||    
T  3940678 ttataaa 3940672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 21828097 - 21828273
Alignment:
Q  72 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 171  Q
    ||||||||||| |||||| |||| |||||||| | |||| | ||||||| || ||||| ||||  |||||||||||||||| ||  |||| | ||| | |    
T  21828097 caggggtggccctgagggagggcgcgaggggctgcagcccagggcaccatttctttaggggcataaaaattattatttttacttcatagtcactacaaaa 21828196  T
Q  172 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    ||||||||||||||||||| | | |||| ||||| ||||||||||||  |||||||| ||||||||||||||| ||||    
T  21828197 tagatatatttctttttaacttgttttgattaatgctattgaaaata-ctttttagagaactttgattataaatgaat 21828273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 259
Target Start/End: Complemental strand, 42336062 - 42335951
Alignment:
Q  148 ttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacga 247  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||||||| |||  |||||| || |||||||||||||||| | ||||||||||||||| ||    
T  42336062 ttttagttaatagttagtattatatagatatatttctttttaattcggtttaattaattatagtgaaaatatatttttaaaaaactttgattataaatga 42335963  T
Q  248 atgtttttcaac 259  Q
    || |||| ||||    
T  42335962 atcttttgcaac 42335951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 40351902 - 40351788
Alignment:
Q  131 ggcaccaaaattattatttttatttagtagttagtactatatagatatatttcttttt-aattcgctttggttaattctattgaaaatatatttttagat 229  Q
    ||||||||| |||||||||||| | ||||||||||| |||||||||||| || ||||| ||||  | ||| |||||||||||||||||||||||||| |     
T  40351902 ggcaccaaagttattatttttactcagtagttagtattatatagatataattattttttaattatccttgtttaattctattgaaaatatatttttaaag 40351803  T
Q  230 aactttgattataaa 244  Q
    |||||||||||||||    
T  40351802 aactttgattataaa 40351788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 13431825 - 13431688
Alignment:
Q  104 ggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggtta 203  Q
    |||| |||| ||||||| ||||||||  |||| |||||||||||| ||||||||||| ||||| ||||||||||||||| ||||| |||   ||||  ||    
T  13431825 ggtaacctagggcaccatttttttaggagcactaaaattattattcttatttagtaggtagtattatatagatatatttatttttgattttttttgaata 13431726  T
Q  204 attctattgaaaatatatttttagataactttgattat 241  Q
    |||||||||||||||||||| | || ||| ||||||||    
T  13431725 attctattgaaaatatatttgtggagaaccttgattat 13431688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 33480633 - 33480529
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 221  Q
    |||| ||| ||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||| | |||||| |||||| |||| ||||||| |    
T  33480633 ttttataggggcaccaaaattattatttttatgtaatagttagtactacatagatatatttctttctaaattgctttgattaattatattaaaaatatgt 33480534  T
Q  222 tttta 226  Q
    |||||    
T  33480533 tttta 33480529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 12177813 - 12177907
Alignment:
Q  143 attatttttatttagtagttagtactatatagatatattt--ctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 235  Q
    |||||||||| ||||||||||||||||||||||||||| |  |||||||||||| |||  |||||| ||||||||||||||||||||| ||||||    
T  12177813 attatttttacttagtagttagtactatatagatatatatatctttttaattcggtttaattaattttattgaaaatatatttttagaaaacttt 12177907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 22318791 - 22318685
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 236  Q
    ||||||||||||||||||||||||||| || ||||||||||| | || |||||||||  |||| |||||| |||||| |||||||||||||| ||||||     
T  22318791 aaaattattatttttatttagtagttaatattatatagatatgtatc-ttttaattccgtttgattaattatattgagaatatatttttagaaaacttta 22318693  T
Q  237 attataaa 244  Q
    ||||||||    
T  22318692 attataaa 22318685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 15134645 - 15134537
Alignment:
Q  71 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactat 170  Q
    |||||||||||| |||||||||||   |||||||| |||| | |||| ||  ||||||| |||||||||||||||||||||| ||||||| |||||||||    
T  15134645 tcaggggtggccctgagggcgggcttaaggggcggcagcccagggcatcaaatttttaggggcaccaaaattattatttttacttagtagctagtactat 15134546  T
Q  171 atagatata 179  Q
    ||| |||||    
T  15134545 atatatata 15134537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 259
Target Start/End: Original strand, 26448382 - 26448495
Alignment:
Q  150 ttatttagtagttagtactatatagatat----atttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaac 245  Q
    |||| ||||||||||||||||||||||||    ||||||||||||||| ||||| ||||||||| | ||| |||||||||||| ||||||||| |||||     
T  26448382 ttatctagtagttagtactatatagatatatatatttctttttaattcactttgattaattctactaaaagtatatttttagagaactttgataataaat 26448481  T
Q  246 gaatgtttttcaac 259  Q
    |||| |||| ||||    
T  26448482 gaatcttttgcaac 26448495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 30095817 - 30095750
Alignment:
Q  187 ttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 254  Q
    ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  30095817 ttaattcgcttttattaattctattgaaaaaatatttttagataactttgattataaatgaatatttt 30095750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 30095927 - 30095845
Alignment:
Q  98 aggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatat 180  Q
    |||||||| |||| | ||||||| |||||||| |||||||||||||||||||||| |||||||||| || |||||| ||||||    
T  30095927 aggggcggcagcccagggcaccatttttttaggggcaccaaaattattatttttacttagtagttattaatatatatatatat 30095845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 15133402 - 15133313
Alignment:
Q  170 tatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    |||| |||||| | ||| ||||||| |||| ||||||||||| |||| ||||||||||||||||||||||||||| |||| |||| ||||    
T  15133402 tatatatatatatatttctaattcgttttgattaattctatttaaaaaatatttttagataactttgattataaatgaatattttacaac 15133313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 21292872 - 21292805
Alignment:
Q  123 tttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaa 190  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||  ||||| ||||||||||||||||    
T  21292872 tttttaggggcaccaaaattattatttttacttagtagttaatatcatataaatatatttctttttaa 21292805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 21136094 - 21136167
Alignment:
Q  104 ggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatat 178  Q
    ||||||| ||||||||| ||||| || ||||||||||| |||||| ||| ||||||||||||||| |||| ||||    
T  21136094 ggtagcccaaggcaccattttttaag-ggcaccaaaatgattattcttagttagtagttagtactgtatatatat 21136167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 37996495 - 37996545
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatat 172  Q
    |||||||  |||||||||||||||||||||| |||||||||| ||||||||    
T  37996495 ttttttatgggcaccaaaattattatttttacttagtagttaatactatat 37996545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 32982336 - 32982432
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattg--aaaatatatttttagataa 231  Q
    |||||||||||||||| || |||||||| |   |||| |||||||| ||||||| ||  |||| ||||||||||||  |||| ||||||||||||||    
T  32982336 aaaattattatttttacttggtagttaggagagtatacatatatttttttttaactcattttgattaattctattgaaaaaaaatatttttagataa 32982432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 31329716 - 31329665
Alignment:
Q  136 caaaattattatttttatttagtagttagtactatatagatatatttctttt 187  Q
    ||||||||||||||||| || ||| |||||| |||||| |||||||||||||    
T  31329716 caaaattattatttttacttcgtaattagtattatatacatatatttctttt 31329665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 48008661 - 48008596
Alignment:
Q  183 ctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    ||||||||||  ||||| ||||||||||| |||| ||| ||||||| ||||||||||||||| ||||    
T  48008661 ctttttaatttactttgattaattctattaaaaaaata-ttttagagaactttgattataaaggaat 48008596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 30095715 - 30095679
Alignment:
Q  302 aatttattgtttcgtccaggacaccaaaaatcctagg 338  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  30095715 aatttattgtttcgcccaggacaccaaaaatcttagg 30095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 36066177 - 36066217
Alignment:
Q  201 ttaattctattgaaaatatatttttagataactttgattat 241  Q
    |||||| ||||||||||||||||||||| || |||||||||    
T  36066177 ttaattgtattgaaaatatatttttagagaattttgattat 36066217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 49164914 - 49164858
Alignment:
Q  117 accacttttttagaggcaccaaaattattatttttatttagtagttagtactatata 173  Q
    |||| |||||||  |||| || |||||||||||||| ||||||||||||| ||||||    
T  49164914 accaattttttaagggcatcataattattatttttacttagtagttagtagtatata 49164858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 75 - 259
Target Start/End: Original strand, 1240366 - 1240554
Alignment:
Q  75 gggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatag 174  Q
    |||||||| ||||||||||   ||||||||| |||| | | ||||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||||     
T  1240366 gggtggccctgagggcgggatggaggggcggcagcccaggacaccatttttttaggggcactaaaattattatttttacttagtagttagtactatataa 1240465  T
Q  175 atatatttctttttaattcgctttggttaattctattgaaaatata----tttttagataactttgattataaacgaatgtttttcaac 259  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||    |||||||| ||||| ||||||||| |||| |||| ||||    
T  1240466 atatatttctttttaatccgctttgattaattctattgaaaatatatttttttttagagaacttcgattataaatgaatcttttgcaac 1240554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 8246869 - 8246760
Alignment:
Q  114 ggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattga 213  Q
    ||||||| ||||||||  ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |||| |||||||||||||    
T  8246869 ggcaccatttttttag--gcaccaaaattattatttttacttaatagttagtactatatagatatatttctttttaatttgatttgattaattctattga 8246772  T
Q  214 aaatatattttt 225  Q
    ||||||||||||    
T  8246771 aaatatattttt 8246760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 72 - 259
Target Start/End: Complemental strand, 23898088 - 23897908
Alignment:
Q  72 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 171  Q
    ||||||||||| |||||| ||||  ||||||||| |||| | || |||| |||||||| |||||||||||||| ||||||| |||||||||||||         
T  23898088 caggggtggccctgagggtgggcttgaggggcggcagcccagggaaccatttttttaggggcaccaaaattatcatttttacttagtagttagta----- 23897994  T
Q  172 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
     | ||||||| |||||||||| |||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||| |||| ||||    
T  23897993 -atatatattcctttttaatttgctttgattaattctatttaaaa-atatttttagataactttgattataaatgaatattttgcaac 23897908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 33735884 - 33735761
Alignment:
Q  131 ggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagata 230  Q
    ||||| |||||||||| |||||| |||||||||||| | |||| |||||||||||||||||| | |||| |||||| ||||||||||||||||||||| |    
T  33735884 ggcactaaaattattaattttatctagtagttagtattgtataaatatatttctttttaatttggtttgattaattatattgaaaatatatttttagaca 33735785  T
Q  231 actttgattataaacgaatgtttt 254  Q
    |||||||||||||| |||| ||||    
T  33735784 actttgattataaatgaatctttt 33735761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 23935124 - 23935299
Alignment:
Q  72 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 171  Q
    ||||||||||| ||| || ||||  ||||||||| |||| | ||||||| |||||||| | |||||||||||  ||||||| ||||||||||||| ||||    
T  23935124 caggggtggccctgaaggtgggcttgaggggcggcagcccagggcaccatttttttagggtcaccaaaattaacatttttacttagtagttagtaatata 23935223  T
Q  172 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 254  Q
    ||      ||||||||||||  |||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  23935224 ta------tttctttttaatctgctttgattaattctatttaaaa-atatttttagataactttgattataaatgaatatttt 23935299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 10976308 - 10976139
Alignment:
Q  73 aggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatat 172  Q
    |||| ||||| |||||| ||||  | ||||||| || | ||||||||| |||||||| |||| ||||||||||| ||||||||||| |||||| ||||||    
T  10976308 agggatggccctgagggtgggcgggcggggcggcagtccaaggcaccatttttttaggggcatcaaaattattagttttatttagtggttagtgctatat 10976209  T
Q  173 agatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 244  Q
    | |||||||  ||||||||| |||||  |  ||| ||||||||||||||||||| | |||||||||||||||    
T  10976208 aaatatatt--tttttaatttgctttcatcgattatattgaaaatatatttttataaaactttgattataaa 10976139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 29664171 - 29664307
Alignment:
Q  116 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaa 215  Q
    ||||| |||||||| |  || |||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| |||| |||||| | | | ||    
T  29664171 caccatttttttagggatactaaaattattatttttacttagtaattagtactatataggtatatttctttttaattcgttttgattaatt-tgtcg-aa 29664268  T
Q  216 atatatttttagataactttgattataaacgaatgtttt 254  Q
    ||||||||||||||||||| ||||||||| |||| ||||    
T  29664269 atatatttttagataacttcgattataaatgaatatttt 29664307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 35405368 - 35405459
Alignment:
Q  168 tatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    |||||| ||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||| ||| |||| |||| ||||    
T  35405368 tatatatatatatttctttttaattcgctttgattaattatatttaaaaaatatttttagataactttgattagaaatgaatattttgcaac 35405459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 1153858 - 1153751
Alignment:
Q  131 ggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagata 230  Q
    ||||||| |||||||||||||||||||||||||||| || |||| ||||||| ||||||| || ||||  ||||||||||| ||||||| |||| ||| |    
T  1153858 ggcaccacaattattatttttatttagtagttagtattaaatagttatatttgtttttaactc-ctttaattaattctattaaaaatatgttttaagaga 1153760  T
Q  231 actttgatt 239  Q
    |||||||||    
T  1153759 actttgatt 1153751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 15103150 - 15103063
Alignment:
Q  162 tagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    |||||||||||||||||||||||||||| || | |||| ||||||||||||||   ||||||||||| ||||||||||||||| ||||    
T  15103150 tagtactatatagatatatttctttttactttgttttgattaattctattgaagtaatatttttagagaactttgattataaatgaat 15103063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 259
Target Start/End: Complemental strand, 3265596 - 3265472
Alignment:
Q  134 accaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataact 233  Q
    ||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||| || |||| | |||||||  ||||||||| |||| ||| ||||    
T  3265596 accaaaattattatttttacttaatagttagtattaaatagatatatttctttttaactcccttt-gataattcttatgaaaatatgttttaagagaact 3265498  T
Q  234 ttgattataaacgaatgtttttcaac 259  Q
    || ||||| || |||| |||| ||||    
T  3265497 tttattatcaatgaatcttttgcaac 3265472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 4626662 - 4626570
Alignment:
Q  132 gcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatattttta 226  Q
    ||||||||||| ||| ||||| |  ||||| |||||| | ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||    
T  4626662 gcaccaaaattcttaattttactg-gtagtaagtactgtttagatat-tttctttttaattctctttgattaattctattgaaaatatattttta 4626570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 16141645 - 16141536
Alignment:
Q  136 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 235  Q
    |||| |||||||| ||||||||||||||||| |||||| | |||||| ||||||| |  ||||| | ||||||| |||||||||| |||||||||| |||    
T  16141645 caaatttattattgttatttagtagttagtattatatataaatatttgtttttaactttctttgatcaattctaatgaaaatata-ttttagataatttt 16141547  T
Q  236 gattataaacg 246  Q
     ||||| ||||    
T  16141546 aattatgaacg 16141536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 22667769 - 22667683
Alignment:
Q  75 gggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagt 161  Q
    |||||||  ||||||||||   ||||||||| |||||| ||||||| || ||||| ||||| |||||||||||||||||||||||||    
T  22667769 gggtggctctgagggcgggtttgaggggcggcagcctagggcaccatttatttaggggcacaaaaattattatttttatttagtagt 22667683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 49762520 - 49762471
Alignment:
Q  195 ctttggttaattctattgaaaatatatttttagataactttgattataaa 244  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  49762520 ctttgattaattctattgaaaatatatttttagagaactttgattataaa 49762471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 45385427 - 45385311
Alignment:
Q  74 ggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatata 173  Q
    ||||||||| |||||| ||||  ||| || || |||||| | ||||| ||| | || || | ||||||||||||||||||||||||||| ||| || ||     
T  45385427 ggggtggccctgagggtgggcgggagaggtggcagcctaggacaccattttataaggggtatcaaaattattatttttatttagtagtttgtattaaatg 45385328  T
Q  174 gatatatttctttttaa 190  Q
    |||||||||||||||||    
T  45385327 gatatatttctttttaa 45385311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 22667272 - 22667206
Alignment:
Q  188 taattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 254  Q
    |||||| ||| | ||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||    
T  22667272 taattcacttagattaattctattgaaaatttatttttggataactttgattataaatgaatatttt 22667206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 254
Target Start/End: Complemental strand, 35204369 - 35204230
Alignment:
Q  111 taaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctat 210  Q
    |||| ||||| ||| ||| || || ||||||||||||||||| |||||| |||||| |||||| | ||||   ||||||| | |||||| |||||| |||    
T  35204369 taagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattatataaaaatat---tttttaaattgctttgattaattatat 35204273  T
Q  211 tgaaaatatatttttagataactttgattataaacgaatgtttt 254  Q
    ||| || ||||||||||| || ||||||||| || |||| ||||    
T  35204272 tgacaa-atatttttagagaattttgattatgaatgaatatttt 35204230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 34299147 - 34298990
Alignment:
Q  73 aggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatat 172  Q
    ||||||| || |||||| |||| |||||||||| |||| | | ||||| | |||||  ||||| |||||| ||||||||  |||||||||| ||| ||||    
T  34299147 aggggtgaccctgagggtgggctcgaggggcggcagcccaggacaccattcttttaagggcactaaaattgttatttttccttagtagttaatacgatat 34299048  T
Q  173 agata----tatttctttttaattcgctttggttaattctattgaaaatatattttta 226  Q
    |||||    ||||| ||||||| | | | |  |||||||||||||| |||||||||||    
T  34299047 agataaatatatttttttttaacttgttgtacttaattctattgaacatatattttta 34298990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 40933 - 40859
Alignment:
Q  99 ggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatata 173  Q
    |||||||  ||| ||| ||||| ||| |||| |||||||||||||||||||||| || ||||||| |||||||||    
T  40933 ggggcggccgcccaagacaccattttattaggggcaccaaaattattatttttactttgtagttaatactatata 40859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 35405285 - 35405346
Alignment:
Q  97 gaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagta 159  Q
    ||||||||| |||| | ||||||| |||||||| |||||||||||||||||||||| ||||||    
T  35405285 gaggggcggcagcccagggcacca-ttttttaggggcaccaaaattattatttttacttagta 35405346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 34258917 - 34258970
Alignment:
Q  158 tagttagtactatatagatatatttctttttaattcgctttggttaattctatt 211  Q
    |||||||| | ||||| |||||||||||||||| ||| ||||||||||||||||    
T  34258917 tagttagtgccatataaatatatttctttttaactcgttttggttaattctatt 34258970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 35384224 - 35384135
Alignment:
Q  147 tttttatttagtagttagtactatatag-atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 235  Q
    ||||||||||||||  | |||||||||  |||||| | |||||||||  ||||| |||||| ||||| ||||||||||||||| ||||||    
T  35384224 tttttatttagtaggcaatactatataatatatatatttttttaattatctttgattaattatattgcaaatatatttttagagaacttt 35384135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 38742443 - 38742499
Alignment:
Q  185 ttttaattcgctttggttaattctattgaaaatatatttttagataactttgattat 241  Q
    |||||| || ||||| |||  ||||||||||||||||||||||| ||||||||||||    
T  38742443 ttttaactcactttgattatatctattgaaaatatatttttagagaactttgattat 38742499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 52805976 - 52805908
Alignment:
Q  148 ttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaa 216  Q
    ||||||||||||||||||| |||||| |||||| | |||||||||| ||||  || ||| |||||||||    
T  52805976 ttttatttagtagttagtattatataaatatatatatttttaattctctttaatttattttattgaaaa 52805908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 9422290 - 9422340
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatat 172  Q
    |||||||||| ||  ||||||||||||||||||||||||||| || |||||    
T  9422290 ttttttagagacattaaaattattatttttatttagtagttaatattatat 9422340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 20756663 - 20756735
Alignment:
Q  116 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaa 190  Q
    ||||| |||||||| |||| ||||||||||||||||| |  || |||||||| ||||| ||||||||||||||||    
T  20756663 caccaattttttag-ggcatcaaaattattatttttactcggtggttagtac-atataaatatatttctttttaa 20756735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 30717893 - 30717941
Alignment:
Q  139 aattattatttttatttagtagttagtactatatagatatatttctttt 187  Q
    |||||||||||||| |||||| ||| || ||||||||||||||| ||||    
T  30717893 aattattatttttacttagtaattaatattatatagatatatttttttt 30717941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 134 - 244
Target Start/End: Original strand, 9699 - 9809
Alignment:
Q  134 accaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataact 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||| |||||||||||||| ||||    
T  9699 accaaaattattatttttatttagtagttagtactatatagatatatatctttttaattcggtttgattaattatattgagaatatatttttagaaaact 9798  T
Q  234 ttgattataaa 244  Q
    |||||||||||    
T  9799 ttgattataaa 9809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 3193715 - 3193533
Alignment:
Q  72 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 171  Q
    ||||||||||| ||||||||||| |||||||||| |||| | ||||||| |||  ||  ||||||||||||||||||||||| |||||| |||||||| |    
T  3193715 caggggtggccctgagggcgggctcgaggggcgggagcccagggcaccattttcataagggcaccaaaattattatttttatgtagtaggtagtactaca 3193616  T
Q  172 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 254  Q
    ||||||||||||||||||| | ||||||  ||||| |||||||||||| |||||| | |||||||||||| || |||| ||||    
T  3193615 tagatatatttctttttaaattgctttgaataattatattgaaaatatgtttttaaagaactttgattatgaatgaatctttt 3193533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 16570639 - 16570521
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 221  Q
    ||||||||||||| ||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  16570639 ttttttagaggcatcaaaattattatttttacttattagttggtaccatatagatatatttctttttaattcactttgattaattctattaaaaatatat 16570540  T
Q  222 ttttagataactttgatta 240  Q
    ||||||| |||||||||||    
T  16570539 ttttagagaactttgatta 16570521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 12263800 - 12263669
Alignment:
Q  113 aggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagata--tatttctttttaattcgctttggttaattctat 210  Q
    |||||||| |||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||  | ||| |||||||||||||||| ||||||||||    
T  12263800 aggcaccatttttttaggggcaccaaaattattatttttacttaatggttagtactatatagatatttttttttttttaattcgctttgattaattctat 12263701  T
Q  211 tgaaaatatatttttagataactttgattata 242  Q
    |||||||||||||||| | |||||||||||||    
T  12263700 tgaaaatatatttttaaagaactttgattata 12263669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 73 - 249
Target Start/End: Original strand, 20870571 - 20870743
Alignment:
Q  73 aggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatat 172  Q
    |||||||||| | |||||||||  ||  ||||| ||| || ||||||| |||||||   | | |||||||||||||||||||||||||||||||||||||    
T  20870571 aggggtggccctcagggcgggcttgataggcggcagcttagggcaccatttttttaagagtatcaaaattattatttttatttagtagttagtactatat 20870670  T
Q  173 agatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    |    |||||||||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||| ||||    
T  20870671 a----tatttctttttaattccctttgattaattttattgataatatatttttagataactttgattataaatgaat 20870743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 122 - 249
Target Start/End: Complemental strand, 32257828 - 32257701
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 221  Q
    ||||||||  ||| |||||| |||||||||| ||||||||||||| || |||||||||||| ||||||||| |||||| |||||| |||||||||||||     
T  32257828 ttttttaggagcatcaaaataattatttttacttagtagttagtattacatagatatatttttttttaatttgctttgattaattttattgaaaatatac 32257729  T
Q  222 ttttagataactttgattataaacgaat 249  Q
    ||||||| ||||||||||||||| ||||    
T  32257728 ttttagagaactttgattataaatgaat 32257701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 502805 - 502920
Alignment:
Q  136 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 235  Q
    ||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||  |||| |||||||||||||||||||||||||||| ||||||    
T  502805 caaaattattatttttacttag-agttagtattatatagatatatttctttttaactc--tttgattaattctattgaaaatatatttttagagaacttt 502901  T
Q  236 gattataaacgaatgtttt 254  Q
    |||||| || |||| ||||    
T  502902 gattatgaatgaatctttt 502920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 3597071 - 3596934
Alignment:
Q  105 gtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaa 204  Q
    |||| ||| ||||||| |||||||| || | |||||||||||||||||||||||| |||||| |||   ||||||||||||||||||||| |||| ||||    
T  3597071 gtagtctagggcaccagttttttag-ggtatcaaaattattatttttatttagtaattagtattattgtgatatatttctttttaattcgttttgattaa 3596973  T
Q  205 ttctattgaaaatatatttttagataactttgattataa 243  Q
    ||||||| |||||||||||||| | || ||||| |||||    
T  3596972 ttctattaaaaatatatttttataaaaatttgaatataa 3596934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 18600127 - 18600292
Alignment:
Q  71 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactat 170  Q
    |||||||| ||| |||||| ||||  ||| |||||| ||| | ||||||| |||| ||| |||| |||||||||||||||||| ||||||||| ||        
T  18600127 tcaggggtagccctgagggtgggcgggagaggcggtggcccagggcaccaattttataggggcatcaaaattattatttttatatagtagttatta---- 18600222  T
Q  171 atagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattat 241  Q
     ||||||| ||||||||| | ||| |||| |||||| |||||||||||| |||||||| ||||||||||||    
T  18600223 -tagatatctttctttttgaatcgatttgattaattatattgaaaatatgtttttagagaactttgattat 18600292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 7886702 - 7886634
Alignment:
Q  175 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataa 243  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  7886702 atatgtttctttttaattcgctttgattaattctattgaaaatatatgtttagataactttgattataa 7886634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 16569429 - 16569321
Alignment:
Q  136 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 235  Q
    ||||||||||||||||| ||||||| || || ||||||| ||||||||||||||| || | || |||||||||||||||||||| |||||||| ||| ||    
T  16569429 caaaattattatttttacttagtaggtaatattatataggtatatttctttttaactcccatttgttaattctattgaaaatatgtttttagaaaacctt 16569330  T
Q  236 gattataaa 244  Q
    || ||||||    
T  16569329 gaatataaa 16569321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 7887327 - 7887264
Alignment:
Q  125 tttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttcttttt 188  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  7887327 tttaggggcaccaaaattattatttttacttagtagttagtactatatagatatgtttcttttt 7887264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 18626684 - 18626771
Alignment:
Q  162 tagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    ||||||| |||||||||||||||||||| || | |||| |||||||||||||| | |||||||| || ||||||||||||||| ||||    
T  18626684 tagtactgtatagatatatttctttttactttgttttgattaattctattgaagaaatattttttgagaactttgattataaatgaat 18626771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 259
Target Start/End: Complemental strand, 25034480 - 25034359
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 236  Q
    |||||||||||||||||| | ||||||   ||||||||||||||||||||| |||| | |||| |||||| |||| ||||| |||||||||| ||||||     
T  25034480 aaaattattatttttattcaatagttaacgctatatagatatatttcttttaaatt-ggtttgattaattgtattaaaaatgtatttttagaaaacttta 25034382  T
Q  237 attataaacgaatgtttttcaac 259  Q
    || ||||| |||| |||| ||||    
T  25034381 ataataaatgaattttttgcaac 25034359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 10325766 - 10325717
Alignment:
Q  131 ggcaccaaaattattatttttatttagtagttagtactatatagatatat 180  Q
    |||||||||||||||||||||| ||||| |||||||||||||| ||||||    
T  10325766 ggcaccaaaattattatttttacttagttgttagtactatatatatatat 10325717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 39542405 - 39542514
Alignment:
Q  131 ggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagata 230  Q
    |||| |||||||||||||||||  ||||||||||||||||||  |||||| | |||||||  ||  ||  || ||| |||||||||||| |||||| | |    
T  39542405 ggcatcaaaattattatttttacgtagtagttagtactatatgaatatatat-tttttaaagcgtgtttattgattatattgaaaatatgtttttaaaga 39542503  T
Q  231 actttgattat 241  Q
    |||||||||||    
T  39542504 actttgattat 39542514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 20870791 - 20870835
Alignment:
Q  297 ggtacaatttattgtttcgtccaggacaccaaaaatcctaggacc 341  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||    
T  20870791 ggtacaatttattgtttcgtccagggcactaaaaattctaggacc 20870835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 8934060 - 8934149
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttaga 228  Q
    ||||||||||||| |||||| ||||||||  || ||| |||||||| ||||||| ||  |||| |||||| ||||||| |||||||||||||    
T  8934060 aaaattattatttatatttaatagttagt-gtacatatatatattt-tttttaactcattttgattaattatattgaagatatatttttaga 8934149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 36161044 - 36161086
Alignment:
Q  136 caaaattattatttttatttagtagttagtactatatagatat 178  Q
    |||||||||||||||||| ||||||||| || |||||||||||    
T  36161044 caaaattattatttttatgtagtagttaatattatatagatat 36161086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 25034312 - 25034283
Alignment:
Q  304 tttattgtttcgtccaggacaccaaaaatc 333  Q
    ||||||||||||||||||||||||||||||    
T  25034312 tttattgtttcgtccaggacaccaaaaatc 25034283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 11383528 - 11383716
Alignment:
Q  72 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 171  Q
    ||||||||||| ||||||  |||  ||||||||| |  | | |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  11383528 caggggtggccctgagggaaggcttgaggggcggaattccagggcaccacttttttag-ggcaccaaaattattatttttatttagtagttagtaatata 11383626  T
Q  172 tagatatatttcttt--ttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    || |||||| | | |  ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |||| |||| ||||    
T  11383627 tatatatatatatatctttaattcgctttgattaattcaattgaaaaaatatttttagataactttgattataaatgaatattttgcaac 11383716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 70 - 249
Target Start/End: Original strand, 15670852 - 15671031
Alignment:
Q  70 ttcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtacta 169  Q
    ||||||||||||| |||||||||||  |||||| || || | | ||||||| || ||| | |  |  |||||||||||||||| |||||||||| ||| |    
T  15670852 ttcaggggtggccctgagggcgggcgggaggggtggcagtccagggcaccaattattttgggaaagtaaaattattatttttacttagtagttattacaa 15670951  T
Q  170 tatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  15670952 tatagatatatttctttttaatttgttttgattaattctattgaaaatatctttttagaaaactttgattataaatgaat 15671031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 33510226 - 33510103
Alignment:
Q  136 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 235  Q
    ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||    
T  33510226 caaaattattatttttacttagtagttagtgctacatagatatatttctttttaattcgttttgattaattccattgaaaatatatttttagagaacttt 33510127  T
Q  236 gattataaacgaatgtttttcaac 259  Q
     |||||||| |||| |||| ||||    
T  33510126 aattataaatgaatcttttgcaac 33510103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 129 - 255
Target Start/End: Original strand, 2758068 - 2758194
Alignment:
Q  129 gaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttaga 228  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| | | |||| ||| ||||| |||| ||||||||||| |    
T  2758068 gaggcaccaaaattattatttttaattagtagttagtactatataaacatatttctttttaactagttttgattatttctaatgaatatatatttttaca 2758167  T
Q  229 taactttgattataaacgaatgttttt 255  Q
    |||| ||| |||| || |||| |||||    
T  2758168 taaccttggttatgaatgaatcttttt 2758194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 54417151 - 54417033
Alignment:
Q  136 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 235  Q
    ||||||||||||||||| || ||||||||| ||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||| |||||| | || |||    
T  54417151 caaaattattatttttacttggtagttagtgctatatagatacatttccttttaattcactttgattaattctactgaaaatatgtttttaaagaatttt 54417052  T
Q  236 gattataaacgaatgtttt 254  Q
    ||||||||| |||| ||||    
T  54417051 gattataaatgaatctttt 54417033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 27538879 - 27538791
Alignment:
Q  171 atagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||| |||| |||| ||||    
T  27538879 atagatatatttatttttaattctctttgattaattctattgaaaatatatttttaaataactttgattagaaatgaatattttgcaac 27538791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 27541226 - 27541151
Alignment:
Q  107 agcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatattt 182  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||    
T  27541226 agcctaaagcaccacttttttaggggcatcaaaattattatttttatttagtaattagtaatatatagatatattt 27541151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 147 - 254
Target Start/End: Complemental strand, 33682780 - 33682673
Alignment:
Q  147 tttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacg 246  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||| | ||| |||| |||||| |    
T  33682780 tttttacttaatagttagtactagatagatatatttctttttaattcactttgattaattctattaaaaatatttttttaaagaaccttgactataaagg 33682681  T
Q  247 aatgtttt 254  Q
    ||| ||||    
T  33682680 aatctttt 33682673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 19149984 - 19149892
Alignment:
Q  131 ggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatattt 223  Q
    |||| ||||||| ||||||||||||| |||||| || | |||| ||||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  19149984 ggcatcaaaatttttatttttatttaatagttaataatttataaatatatttctttttaattcgctttgattaattatatcgaaaatatattt 19149892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 52706855 - 52706727
Alignment:
Q  71 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactat 170  Q
    ||||| |||||| ||||||||| |  |||||||| ||| ||| | ||||| |||||||  || | ||||||||||||||||||||||||||   ||| ||    
T  52706855 tcaggagtggccctgagggcggacgggaggggcgatagtctaggacaccatttttttaagggtatcaaaattattatttttatttagtagtctttacaat 52706756  T
Q  171 atagatatatttctttttaattcgctttg 199  Q
    |||||||||||||||||||||| ||||||    
T  52706755 atagatatatttctttttaatttgctttg 52706727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 47000946 - 47000872
Alignment:
Q  184 tttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| |||| |||| ||||    
T  47000946 tttttaattcgctttgattaattctattgaaaa-atatttttagataattttgattataaatgaatattttgcaac 47000872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 168834 - 168697
Alignment:
Q  114 ggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattga 213  Q
    ||||||| || |||||  |||||| |||||||||||| | |||||||| || |||||||| |||||||  ||||||| ||||| || |||||||||||||    
T  168834 ggcaccatttgtttagttgcaccataattattatttt-acttagtagtcagcactatataaatatatta-tttttaactcgctgtgattaattctattga 168737  T
Q  214 aaatatatttttagataactttgattataaacgaatgtttt 254  Q
    ||||||| ||||||| ||| |||||||| || |||| ||||    
T  168736 aaatata-ttttagagaaccttgattatgaatgaatctttt 168697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 11365079 - 11365170
Alignment:
Q  168 tatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    |||||| |||||| | | || ||||||||||| ||||||| |||||||| ||||||||| ||||||||||||||||| |||| |||| ||||    
T  11365079 tatatatatatatatatattgaattcgctttgattaattcaattgaaaagatatttttaaataactttgattataaatgaatattttgcaac 11365170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 254
Target Start/End: Original strand, 17713251 - 17713390
Alignment:
Q  111 taaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctat 210  Q
    |||| ||||| ||| ||| || || ||||||||||||||||| |||||| |||||  |||||||| ||||   ||||||| | |||||| |||||| |||    
T  17713251 taagacaccattttcttaaagacatcaaaattattatttttacttagtaattagttttatatagaaatat---tttttaaattgctttgattaattatat 17713347  T
Q  211 tgaaaatatatttttagataactttgattataaacgaatgtttt 254  Q
    ||| || ||||||||||| || ||||||||| || |||| ||||    
T  17713348 tgacaa-atatttttagagaattttgattatgaatgaatatttt 17713390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 254
Target Start/End: Original strand, 19014480 - 19014619
Alignment:
Q  111 taaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctat 210  Q
    |||| ||||| ||| ||| || || ||||||||||||||||| |||||| |||||  |||||||| ||||   ||||||| | |||||| |||||| |||    
T  19014480 taagacaccattttcttaaagacatcaaaattattatttttacttagtaattagttttatatagaaatat---tttttaaattgctttgattaattatat 19014576  T
Q  211 tgaaaatatatttttagataactttgattataaacgaatgtttt 254  Q
    ||| || ||||||||||| || ||||||||| || |||| ||||    
T  19014577 tgacaa-atatttttagagaattttgattatgaatgaatatttt 19014619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 39838466 - 39838550
Alignment:
Q  133 caccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatat 219  Q
    |||||||||||||  ||||| ||| ||||||||||| |||| |||||||||||||||| ||  | || |||||| ||||||||||||    
T  39838466 caccaaaattatt--ttttaattactagttagtactgtataaatatatttctttttaactcattatgattaattatattgaaaatat 39838550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 8266744 - 8266618
Alignment:
Q  116 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggtt-aattctattgaa 214  Q
    ||||| ||||| | ||||||||||||||| |||||||  || ||||||||| ||||||| |||||||  |||||| ||  |||| || || |||| ||||    
T  8266744 caccattttttaaaaggcaccaaaattatgatttttacgtaatagttagtattatataggtatattttcttttaactctgtttgattaaactctactgaa 8266645  T
Q  215 aatatatttttagataactttgattat 241  Q
    ||||| |||| ||| ||| ||||||||    
T  8266644 aatatgttttcagagaaccttgattat 8266618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 42417901 - 42417977
Alignment:
Q  110 ctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttt 187  Q
    ||||||||||| || ||||| ||||  | |||||||||||||| |||||||||| ||||||||| |||||||| ||||    
T  42417901 ctaaggcaccatttgtttag-ggcattataattattatttttacttagtagttaatactatataaatatatttgtttt 42417977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 27538753 - 27538709
Alignment:
Q  297 ggtacaatttattgtttcgtccaggacaccaaaaatcctaggacc 341  Q
    |||||||||||||||||| |||| ||||||||||||| |||||||    
T  27538753 ggtacaatttattgtttcatccaagacaccaaaaatcttaggacc 27538709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 7741724 - 7741790
Alignment:
Q  162 tagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttaga 228  Q
    ||||| |||| |||||||||||||||||| ||  |||| |||||| | |||||||||| ||||||||    
T  7741724 tagtattatagagatatatttctttttaactcattttgattaattttgttgaaaatatgtttttaga 7741790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 11383751 - 11383788
Alignment:
Q  296 gggtacaatttattgtttcgtccaggacaccaaaaatc 333  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  11383751 gggtacaatttatagtttcgtccagggcaccaaaaatc 11383788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 107 - 254
Target Start/End: Original strand, 5163763 - 5163910
Alignment:
Q  107 agcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaatt 206  Q
    |||||| ||||| | | |||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||| ||||||    
T  5163763 agcctagggcactattattttaggggcatcaaaattattatttttacttagtagttagtactatataaatatatatctttttaattcggtttgattaatt 5163862  T
Q  207 ctattgaaaatatatttttagataactttgattataaacgaatgtttt 254  Q
     |||||| |||||  ||||||| ||||||||||||||| |||| ||||    
T  5163863 atattgagaatattattttagaaaactttgattataaatgaatctttt 5163910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 114 - 244
Target Start/End: Complemental strand, 30257932 - 30257801
Alignment:
Q  114 ggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtacta-tatagatatatttctttttaattcgctttggttaattctattg 212  Q
    ||||||| | ||||| ||||| |||||||||| |||||| ||| |||||| ||||| |||||||||||||||||| |||||| |||| |||||| |||||    
T  30257932 ggcaccattattttaaaggcatcaaaattattttttttacttaatagttaatactaatatagatatatttcttttcaattcggtttgattaattatattg 30257833  T
Q  213 aaaatatatttttagataactttgattataaa 244  Q
    |||||||||||||||| |||||||||||||||    
T  30257832 aaaatatatttttagagaactttgattataaa 30257801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 28556734 - 28556621
Alignment:
Q  136 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 235  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||| |||| |||||| |||| |||||||||||||| | ||||||    
T  28556734 caaaattattatttttacttagtagttagtactatatagatacatttcgtttaaattcggtttgattaattatattaaaaatatatttttaaagaacttt 28556635  T
Q  236 gattataaacgaat 249  Q
    ||| ||||||||||    
T  28556634 gatgataaacgaat 28556621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 132 - 249
Target Start/End: Original strand, 38561838 - 38561954
Alignment:
Q  132 gcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataa 231  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| | |||| ||||||| ||||||||||| |||||||| ||    
T  38561838 gcaccgaaattattatttttatttagtagttattacaatatagatacatttctttttaatttgttttgattaattc-attgaaaatatttttttagagaa 38561936  T
Q  232 ctttgattataaacgaat 249  Q
    |||| |||||||| ||||    
T  38561937 ctttcattataaatgaat 38561954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 40877082 - 40876949
Alignment:
Q  108 gcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattc 207  Q
    ||||| || |||| |||||||| | |||||||||||||||||||| || |||||||||| |||||| |||||||||||||||| | | || | |||||||    
T  40877082 gcctagggtaccaattttttagggacaccaaaattattatttttacttggtagttagtattatataaatatatttctttttaacttgtttggattaattc 40876983  T
Q  208 tattgaaaatatatttttagataactttgattat 241  Q
    ||||||||||||||||||| | ||| ||||||||    
T  40876982 tattgaaaatatatttttatagaaccttgattat 40876949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 134 - 244
Target Start/End: Original strand, 28148887 - 28148996
Alignment:
Q  134 accaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataact 233  Q
    ||||||||||||| |||||| ||||| ||||||||||| |||||||| | ||||||||||| |||| |||||| ||||||||||| ||||||| | ||||    
T  28148887 accaaaattattacttttatatagtaattagtactatagagatatatat-tttttaattcgttttgattaattatattgaaaataaatttttaaagaact 28148985  T
Q  234 ttgattataaa 244  Q
    |||||||||||    
T  28148986 ttgattataaa 28148996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 1241111 - 1241212
Alignment:
Q  130 aggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagat 229  Q
    |||||||||||||||||| |||| ||  || ||||||  ||||| ||||||||| |||| | || |||||||||||||||||||||||||||||||||||    
T  1241111 aggcaccaaaattattatgtttacttcttatttagtaaaatatacatatatttccttttgactcactttggttaattctattgaaaatatatttttagat 1241210  T
Q  230 aa 231  Q
    ||    
T  1241211 aa 1241212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 36186700 - 36186631
Alignment:
Q  175 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 244  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  36186700 atatatttctttttaattctctttgattaattatattgaaaatatatttttagagaactttgattataaa 36186631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 122 - 249
Target Start/End: Complemental strand, 17271406 - 17271276
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttct---ttttaattcgctttggttaattctattgaaaata 218  Q
    |||||||| || ||||||||||||||||||| |||||||| ||||  |||||||||||| | |   |||| ||| | |||| |||||| |||||||||||    
T  17271406 ttttttaggggtaccaaaattattatttttacttagtagtcagtataatatagatatatatatattttttcatttgttttgattaattatattgaaaata 17271307  T
Q  219 tatttttagataactttgattataaacgaat 249  Q
    |||||||||  ||||||||||||||| ||||    
T  17271306 tatttttagcaaactttgattataaatgaat 17271276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 244
Target Start/End: Original strand, 16547626 - 16547772
Alignment:
Q  100 gggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatat--ttctttttaattcgctt 197  Q
    |||||||||||||  |||||| | |||||| |||||||| ||||| |||  || |  |||||| |||||||||||||||||  || ||||||||| | ||    
T  16547626 gggcggtagcctagagcaccattgttttaggggcaccaatattatcattagtactcggtagttggtactatatagatatatatttttttttaatttggtt 16547725  T
Q  198 tggttaattctattgaaaatatatttttagataactttgattataaa 244  Q
    || |||||| ||||||||||||  ||||||| |||||||||||||||    
T  16547726 tgattaattatattgaaaatattattttagaaaactttgattataaa 16547772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 16648025 - 16647942
Alignment:
Q  74 ggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttag 157  Q
    ||||||||| |||||||||||||||||||||| | || | ||||||| |||||||| |||| ||||||||||||||||||||||    
T  16648025 ggggtggccgtgagggcgggcacgaggggcggcaacccagggcaccatttttttaggggcatcaaaattattatttttatttag 16647942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 18830100 - 18829984
Alignment:
Q  139 aattattatttttatttagtagttagtactatatagatatatttct-ttttaattcgctttggttaattctattgaaaatatatttttagataactttga 237  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||| ||||||   ||| || |||||| ||||||||||||||||||||| |||  |||    
T  18830100 aattattatttttacttagtgggtagtactatatagatatatttcttttttaacatgctatgattaattttattgaaaatatatttttagagaacaatga 18830001  T
Q  238 ttataaacgaatgtttt 254  Q
    |||| || |||| ||||    
T  18830000 ttatgaatgaatttttt 18829984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 37912332 - 37912416
Alignment:
Q  175 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    |||||| |||||||||||||||||| || ||||| |||||||||||||||| | |||||||||||||||| |||| |||| ||||    
T  37912332 atatatatctttttaattcgctttgatttattctcttgaaaatatatttttgggtaactttgattataaatgaatattttgcaac 37912416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 36507000 - 36506909
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttaga 228  Q
    ||||| |||||||||| ||||||||||||| |||||||| |||||| ||||||| || ||||| || |||||||||||||||  ||||||||    
T  36507000 aaaatcattatttttaattagtagttagtattatatagaaatatttgtttttaactctctttgattgattctattgaaaatacgtttttaga 36506909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 16647053 - 16646975
Alignment:
Q  171 atagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 249  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||| || ||| |||||||| ||||    
T  16647053 atagatatatttctttttaatttgttttgattaattctattgaaaatatctttttagagaattttaattataaatgaat 16646975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 244
Target Start/End: Complemental strand, 2887217 - 2887046
Alignment:
Q  75 gggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatt------tagtagttagtact 168  Q
    |||||||| |||||| |||   ||||||||| |  ||| ||||||| | |||||| || ||||||||||||||||| |||      ||||  ||||| ||    
T  2887217 gggtggccctgagggtgggtgggaggggcggcaatctagggcaccattattttaggggtaccaaaattattattttaattactaattagtgattagtgct 2887118  T
Q  169 atatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 244  Q
    ||||||||    || ||||||||||| |||| ||||||||||| |||| ||||||||||| |||||||||||||||    
T  2887117 atatagat----ttttttttaattcgttttgattaattctattaaaaaaatatttttagagaactttgattataaa 2887046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 18197324 - 18197426
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 221  Q
    |||||||  |||| ||||||||||||||||| ||  ||||||||| ||| || |||||||||||||||| ||| ||||||||| |||| ||||||||| |    
T  18197324 ttttttattggcatcaaaattattatttttacttgatagttagtattat-tacatatatttctttttaactcgttttggttaagtctactgaaaatattt 18197422  T
Q  222 tttt 225  Q
    ||||    
T  18197423 tttt 18197426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 4206415 - 4206345
Alignment:
Q  189 aattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 259  Q
    ||||||||||| ||||||||||| |||| ||| |||||||||||||| |||||||| |||| |||| ||||    
T  4206415 aattcgctttgattaattctatttaaaaaatacttttagataactttaattataaatgaatattttgcaac 4206345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 4206705 - 4206647
Alignment:
Q  122 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatat 180  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||| |||||| ||||||    
T  4206705 ttttttaggggcaccaaaattattatatttacttagtagttagtaatatatatatatat 4206647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 14951642 - 14951700
Alignment:
Q  129 gaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttt 187  Q
    |||||||||| |||| |||||||||||||||||||||| | ||||||||||||| ||||    
T  14951642 gaggcaccaagattaatatttttatttagtagttagtaatttatagatatatttttttt 14951700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 15925456 - 15925559
Alignment:
Q  115 gcaccacttttttagaggcaccaaaattattatttttatttagta--gttagtactatatagatatatttctttttaattcgctttggttaattctattg 212  Q
    |||||| ||||| || || | ||||||||||||||||| || |||  || |||| | ||||||||||||||||||||| |||||||  |||||| |||||    
T  15925456 gcaccattttttaaggggtatcaaaattattatttttactttgtattgtaagtattgtatagatatatttctttttaactcgctttaattaattatattg 15925555  T
Q  213 aaaa 216  Q
    ||||    
T  15925556 aaaa 15925559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 28226877 - 28226833
Alignment:
Q  134 accaaaattattatttttatttagtagttagtactatatagatat 178  Q
    |||||||||||||||||||||||||||||| || |||||||||||    
T  28226877 accaaaattattatttttatttagtagttaatattatatagatat 28226833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 37911367 - 37911459
Alignment:
Q  71 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagtta 163  Q
    |||||||||||| |||| |||| |  ||||||||| |||| | | ||||| || ||||| |||||||||||||||||||||  ||||||||||    
T  37911367 tcaggggtggccctgagcgcggccttgaggggcggcagcccaggacaccatttatttaggggcaccaaaattattatttttgcttagtagtta 37911459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 130 - 257
Target Start/End: Complemental strand, 35281068 - 35280938
Alignment:
Q  130 aggcaccaaaattattatttttatttagtagttagtactatatagata--tatt-tctttttaattcgctttggttaattctattgaaaatatattttta 226  Q
    |||| ||| ||| |||||||||| ||| ||||||||| | ||||||||  |||| | ||||||| | | |||| ||||||||||||||||||||||||||    
T  35281068 aggctccagaatgattatttttacttaatagttagtattgtatagatacatattatttttttaacttgatttgattaattctattgaaaatatattttta 35280969  T
Q  227 gataactttgattataaacgaatgtttttca 257  Q
     |||| | | ||||| || |||| |||||||    
T  35280968 aataattatcattatgaatgaatctttttca 35280938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 6621319 - 6621395
Alignment:
Q  136 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattg 212  Q
    ||||||||||||||| |||| ||||||| ||  ||||  |||||||||||||||| || ||||| |||||| |||||    
T  6621319 caaaattattattttcatttggtagttaatagcatatgcatatatttctttttaactccctttgattaattttattg 6621395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 34345961 - 34346036
Alignment:
Q  168 tatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 244  Q
    |||||||||||||||||||| |||| | |||| ||| || ||||||||||||||||||| | || ||||||| ||||    
T  34345961 tatatagatatatttctttt-aatttggtttgattagttatattgaaaatatatttttatagaattttgattctaaa 34346036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 38134049 - 38134159
Alignment:
Q  114 ggcaccacttttttagaggcaccaaaattattatttttat--ttagtagttagtactatatagatatatttctttttaattcgctttggttaattctatt 211  Q
    ||||||| || ||||||| ||| ||||| ||||||||| |  ||||||||||||| || ||| ||||  |||||||||| ||| |||| |||||| ||||    
T  38134049 ggcaccaattctttagagacactaaaataattatttttttacttagtagttagtagtacataaatat--ttctttttaactcgatttgattaattatatt 38134146  T
Q  212 gaaaatatatttt 224  Q
     ||||||| ||||    
T  38134147 aaaaatatttttt 38134159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 33819262 - 33819217
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatattt 182  Q
    ||||||||||||||||||||  |||| |||||| ||||||||||||    
T  33819262 aaaattattatttttatttaaaagttggtactacatagatatattt 33819217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 44157246 - 44157320
Alignment:
Q  165 tactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattat 241  Q
    ||||||||| ||||||||  ||| |||| |||||| |||||||||||  ||||||||||||||| ||  ||||||||    
T  44157246 tactatataaatatattt--tttcaatttgctttgattaattctattagaaatatatttttagagaaacttgattat 44157320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 34909480 - 34909424
Alignment:
Q  124 ttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatat 180  Q
    |||||| ||||  |||||||||||||||| ||| ||||||||| |||||| ||||||    
T  34909480 ttttaggggcattaaaattattatttttacttactagttagtaatatatatatatat 34909424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 75 - 254
Target Start/End: Original strand, 5785 - 5963
Alignment:
Q  75 gggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatag 174  Q
    |||||||| |||||||||||  ||||||||| |||| |||||||||  ||  ||  |||||||||||||||||||||||  |||||||||||||| ||||    
T  5785 gggtggccctgagggcgggctagaggggcgggagcccaaggcaccatcttcatatgggcaccaaaattattatttttatg-agtagttagtactacatag 5883  T
Q  175 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 254  Q
    |||||||||||| ||| | |||||| |||||| |||||||||||| |||||| | || ||||||||| || |||| ||||    
T  5884 atatatttctttctaaattgctttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatttttt 5963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 98 - 228
Target Start/End: Original strand, 65000 - 65132
Alignment:
Q  98 aggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttcttttt---aattcg 194  Q
    |||| |||||| | ||||||||| |||||||| ||||| ||||||||||| |||| |||||| ||||||| ||| ||||| |||| |||||   |||| |    
T  65000 agggacggtagtccaaggcaccatttttttaggggcac-aaaattattatatttacttagtaattagtacaataaagatagattttttttttttaatttg 65098  T
Q  195 ctttggttaattctattgaaaatatatttttaga 228  Q
    ||||| |||||||||||||||||||||| |||||    
T  65099 ctttgattaattctattgaaaatatattgttaga 65132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 327934 - 328020
Alignment:
Q  137 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatattttt 225  Q
    ||||||||||| ||||||||||| || ||| |||||| |||||||||  ||||| || ||||| ||||||||||| ||||||| |||||    
T  327934 aaaattattatgtttatttagtaattggtagtatatacatatatttc--tttaactcactttgattaattctattaaaaatattttttt 328020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 380 - 436
Alignment:
Q  188 taattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 244  Q
    |||||| ||||  ||||||| |||||||| |||||||||||||||||||||||||||    
T  380 taattcactttaattaattcaattgaaaaaatatttttagataactttgattataaa 436  T

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Target: scaffold1173; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 493 - 525
Alignment:
Q  300 acaatttattgtttcgtccaggacaccaaaaat 332  Q
    ||||||||| |||||||||||||||||||||||    
T  493 acaatttatagtttcgtccaggacaccaaaaat 525  T

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Target: scaffold0527 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 1711 - 1753
Alignment:
Q  202 taattctattgaaaatatatttttagataactttgattataaa 244  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  1711 taattttattgaaaatatatttttagagaactttgattataaa 1753  T

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Target: scaffold0527; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 9774 - 9816
Alignment:
Q  202 taattctattgaaaatatatttttagataactttgattataaa 244  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  9774 taattttattgaaaatatatttttagagaactttgattataaa 9816  T

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Target: scaffold1702 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1702
Description:

Target: scaffold1702; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 320 - 421
Alignment:
Q  138 aaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttga 237  Q
    ||||| ||||||| || ||||||||| ||| |||||||||||||| | |||||||| ||||   |||||  ||| ||||||||||||| |  ||||||||    
T  320 aaattgttattttcatgtagtagttattacaatatagatatatttttctttaattcactttcactaattaaattaaaaatatattttttgtaaactttga 419  T
Q  238 tt 239  Q
    ||    
T  420 tt 421  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 18557 - 18629
Alignment:
Q  138 aaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctat 210  Q
    |||||| |||||||| ||| ||||||||  |||||| || ||||||||||||| | ||||||  |||||||||    
T  18557 aaattaatatttttacttattagttagtggtatatacatgtatttctttttaacttgctttgaataattctat 18629  T

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