View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3794_low_6 (Length: 470)
Name: NF3794_low_6
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3794_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 47319037 - 47318613
Alignment:
| Q |
19 |
ggttatcagtttgaaaagcttccagatgattggagatgtcccacttgtggtgctgcacaaagtttcttcgaaagtaaaagtgttgaaattgctggttttg |
118 |
Q |
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| T |
47319037 |
ggttatcagtttgaaaagcttccagatgattggagatgtcccacttgtggtgctgcacaaagtttcttcgaaagtaaaagtgttgaaattgctggttttg |
47318938 |
T |
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| Q |
119 |
ctcagaatcaacaatatggacttggtggaaattctcttactggtggtcagaaaactgtgcttatttatggtactttgttgtttttctttgccctttttct |
218 |
Q |
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| T |
47318937 |
ctcagaatcaacaatatggacttggtggaaattctctcactggtggtcagaaaactgtgcttatttatggtactttgttgtttttctttgccctttttct |
47318838 |
T |
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| Q |
219 |
cagtggctacttcatacaatagtgttattattcattctcatcttatcaatcaaattactcctctcatttctgannnnnnnngttggattggatgcgtatt |
318 |
Q |
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| T |
47318837 |
cagtggctacttcatacaatagtgttattattcattctcatcttatcaatcaaattacttctctcatttctga--atttttgttggattggatgcgtatt |
47318740 |
T |
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| Q |
319 |
taaaattggaatgagtataagatactatctgtccaatactttgttggtgacaagtgtatgtaatgttgttaataataaatacttaaccgtaagagccaag |
418 |
Q |
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| T |
47318739 |
taaaattggaatgagtataagatactatctgtccaatactttgttggtgacaagtgtatgtaatgttgttaat----aatacttaaccgtaagagccaag |
47318644 |
T |
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| Q |
419 |
tatgaggattatcaatcattcatcttacaca |
449 |
Q |
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| T |
47318643 |
tatgaggattatcaatcattcatcttacaca |
47318613 |
T |
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