View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3794_low_7 (Length: 454)
Name: NF3794_low_7
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3794_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 24 - 454
Target Start/End: Complemental strand, 33479774 - 33479342
Alignment:
| Q |
24 |
ataaagttttcactgtcgtttaacagtggctaattagcgtcaacaaaaacttgtggagcagataaggtgactctctcactccagccnnnnnnnn-gttct |
122 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
33479774 |
ataaagttttcactgtcgtttaacggtggctaatttacgtcaacaaaaacttgtggagcagataaggtgactctctcactccaacctttttttttgttct |
33479675 |
T |
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| Q |
123 |
tcatgcgcatgggatagaaattgaacatcaccaaatatttaaggggcctaaatctcttactactttgagcaatttattgttgacgagactttgactttat |
222 |
Q |
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| T |
33479674 |
tcatgcgtatgggatagaaattgaacatcaccaaatgtttaaggggcctaaatctcttactactttgagcaatttattgttgacgagactttgactttat |
33479575 |
T |
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| Q |
223 |
tctagcctaatttcatttgcaaacnnnnnnnnnncttggtcaagcatttgcaagctattttattaactatccggnnnnnnnnnnttacattatatttaga |
322 |
Q |
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| T |
33479574 |
tcgagcctaatttcatttgcaagcttttttttttcttggtcaagcatttgcaagctattttattaactatccggaaaaaaaaaattacattatatttaga |
33479475 |
T |
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| Q |
323 |
acagtctaaaacaatttgaagactattacaatcttaaaacataaac-tttaannnnnnnnnaggcccttaattttgaaatcatgtgttaaaggtcttgtt |
421 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33479474 |
acagtctaaaacaatttgaagactgttacaatcttaaaacataaacttttaatttttttttaggcccttaattttgaaatcatgtgttaaaggtcttgtt |
33479375 |
T |
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| Q |
422 |
acacgattcaagtcatgattattttgtattggt |
454 |
Q |
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| T |
33479374 |
acacgattcaagtcatgattattttgtattggt |
33479342 |
T |
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