View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3794_low_9 (Length: 406)
Name: NF3794_low_9
Description: NF3794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3794_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 4 - 406
Target Start/End: Complemental strand, 33259851 - 33259447
Alignment:
| Q |
4 |
gagcacagatgaaacacggagttcatgggttaatgtcaaaatttgtgccatattattgtgatgtaatttccaaaaataggtgaaaatgaaatgatgtgat |
103 |
Q |
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| T |
33259851 |
gagcacaaatgaaacacggagttcatgggttaatgtcaaaatttgtgacatattattgtgatgtaatttacaaaaataagtgaaaatgaaatgatgtgat |
33259752 |
T |
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| Q |
104 |
agccccaatcggaattatgtgttggataccacgtacttggaaggaagcaaccataggggagttgttaaccatgtgccttgtggggcagctatggattcca |
203 |
Q |
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| T |
33259751 |
agacccaatcggaattatgtgttggataccacgtacttggaaggaagcaaccataggggagttgttaaccatgtgccttgtggggcagctatggattcca |
33259652 |
T |
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| Q |
204 |
ataattcaagattcaaaacatgatcaaaagaggttggaatatcagttgagagaatctttgtta--ttgtttgcttgcaaattgtttgcttaattgatgat |
301 |
Q |
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| T |
33259651 |
ataattcaagattcaaaacatgatcaaaagaggttggaatatcagttgagagaatctttgttagtttgtttgcttgcaaattgtttgcttaattgatgat |
33259552 |
T |
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| Q |
302 |
actacttagcaatggtttttcaccggtccattgaaaacttgtcctaatttattcatggaaaatatagaacgtagtatatgttttagggtggatttttaga |
401 |
Q |
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| T |
33259551 |
actacttagcaatggtttttcaccggtccattcaaatcttgtcctaatttattcatgggaaatatagaacgtagtatatgttttagggtggatttttaga |
33259452 |
T |
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| Q |
402 |
ctcat |
406 |
Q |
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| T |
33259451 |
ctcat |
33259447 |
T |
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