View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3795_high_1 (Length: 1080)
Name: NF3795_high_1
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 389 - 843
Target Start/End: Complemental strand, 29672395 - 29671950
Alignment:
| Q |
389 |
ggtatgatgattaaaggaaactgataaagatggtgaagcaatatggtgaaagaaaatgggctcaaatagctgagaagttagaaggaagggttggcaagca |
488 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29672395 |
ggtatgatgattaaaggaaactgataaagttggtgaagcaatatggtgaaagaaaatgggctcaaatagctgagaagttagaaggaagggttggcaaaca |
29672296 |
T |
|
| Q |
489 |
gtgtagagagcgatggcataatcatttgcgtcctgatattaaggttagatatatatgtacctannnnnnnatttcatataatttttattacaagttttgt |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29672295 |
gtgtagagagcgatggcataatcatttgcgtcctgatattaaggttcgatatatatgtacctatttttttatttcatataatttttattacaagttttgt |
29672196 |
T |
|
| Q |
589 |
gcttgaatttgaccctatgattacatagttttgcacattgataaattttgcttctacatagttgcatggaattgctttctacttaatttcaactatgttt |
688 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29672195 |
gcttgaatttgaccctatgattacatagttttgcacattgataaattttgcttctacatagttgcatggaattgctttcaacttaatttcaactatgttt |
29672096 |
T |
|
| Q |
689 |
ttccaagattatttcttgaaataatattttcctatttatccgatgatctagatttagatgatttagattcatattttcaaggatctttgttttttaggga |
788 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29672095 |
ttccgagattatttcttgaaataatattttcctatttatccgatgatctagattt---------agattcatattttcaaggatctttgttttttaggga |
29672005 |
T |
|
| Q |
789 |
ggatctaggtttgtcatccgcatatataggttgattgatacatctagagatctaa |
843 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29672004 |
ggatctaggtttgtcatccgcatatataggttgattgatacatctagagatctaa |
29671950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 29672773 - 29672458
Alignment:
| Q |
11 |
attatactcaacagtcaagctttgttgttgatggggtcttagcaaatgaagaggctttgaagtggactaacttcaaccaaacccccacattgtgccttaa |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29672773 |
attatactcaacaatcaagctttgttgttgatggggtcttagcaaatgaagaggctttgaagtggactaacttcaaccaaacccccacattgtgccttaa |
29672674 |
T |
|
| Q |
111 |
ggaccttcaaggttatggtgaaaacaccaacattgtgggaagaaaaactaagaaagagacttctgagatcttgatcaaaggacaatggacaaacgaagaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29672673 |
agaccttcaaggttatggtgaaaacaccaacattgtgggaagaaaaactaagaaagagacttctgagatcttgatcaaaggacaatggacaaacgaagaa |
29672574 |
T |
|
| Q |
211 |
gacaggttaaattcatatcttatatcgggtttgagtacctcttatactcttttttaatcgtatacctatatatcttgtaacttcnnnnnnnnngttcttt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29672573 |
gacaggttaaattcatatcttatatcgggtttgagtacctcttatactcttttttaatcgtatacctatatatcttgtaacttaaaaaaaaatgttcttt |
29672474 |
T |
|
| Q |
311 |
acatagaaaaagctcc |
326 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29672473 |
acatagaaaaagctcc |
29672458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 908 - 1062
Target Start/End: Complemental strand, 29671890 - 29671734
Alignment:
| Q |
908 |
atcttgttaatataaatcaatcttgatgtgggtttcatccattttttagcacaaaataaaaatgtaaatttttgttttgatctaccctttgataagtgat |
1007 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29671890 |
atcttgttaatataaatcaatcttgatgtgggtttcatcaattttttagcacaaaataaaaatgtaaaattttgttttgatctaccctttgataagtgat |
29671791 |
T |
|
| Q |
1008 |
actttttgtctcttaaca--nnnnnnngacgaaattgttccttaacatttaaaacat |
1062 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
29671790 |
actttttgtctcttaacatttttttttgacgaaattgtcccttaacatttaaaacat |
29671734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 8e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 434 - 611
Target Start/End: Complemental strand, 27003141 - 27002964
Alignment:
| Q |
434 |
gtgaaagaaaatgggctcaaatagctgagaagttagaaggaagggttggcaagcagtgtagagagcgatggcataatcatttgcgtcctgatattaaggt |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27003141 |
gtgaaagaaaatgggctcaaatagctgagaagttagaaggaagggttggcaagcagtgtagagagcgatggcataatcatttgcgtcctgatattaagtt |
27003042 |
T |
|
| Q |
534 |
tagatatatatgtacctannnnnnnatttcatataa-tttttattacaagttttgtgc-ttgaatttgaccctatgatta |
611 |
Q |
| |
|
||| ||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
27003041 |
tag--atatatgtaccaatttttttatttcatataattttttattacaagttttgtgctttgaatttgaccctaggatta |
27002964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 5e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 434 - 611
Target Start/End: Original strand, 35538096 - 35538273
Alignment:
| Q |
434 |
gtgaaagaaaatgggctcaaatagctgagaagttagaaggaagggttggcaagcagtgtagagagcgatggcataatcatttgcgtcctgatattaaggt |
533 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
35538096 |
gtgaaagaaaatgggctcaaatagcagagaagttagaaggaagggttggcaagcagtgtagagagcgatggcacaatcatttgcgtcctgatattaagtt |
35538195 |
T |
|
| Q |
534 |
tagatatatatgtacctannnnnnnatttcatataa-tttttattacaagttttgtgc-ttgaatttgaccctatgatta |
611 |
Q |
| |
|
||| ||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
35538196 |
tag--atatatgtaccaatttttttatttcatataattttttattacaagttttgtgctttgaatttgaccctaggatta |
35538273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 401 - 527
Target Start/End: Complemental strand, 25380975 - 25380849
Alignment:
| Q |
401 |
aaaggaaactgataaagatggtgaagcaatatggtgaaagaaaatgggctcaaatagctgagaagttagaaggaagggttggcaagcagtgtagagagcg |
500 |
Q |
| |
|
|||||||| || | ||| |||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||| | ||| |||||||| || || || |
|
|
| T |
25380975 |
aaaggaaattgttgaagctggtgaagcaatatggtgtaagaaaatggtctcaaatagctgagaagttggaaggaagagctggaaagcagtgcagggaacg |
25380876 |
T |
|
| Q |
501 |
atggcataatcatttgcgtcctgatat |
527 |
Q |
| |
|
||||||||||||| || | |||||||| |
|
|
| T |
25380875 |
atggcataatcatctgaggcctgatat |
25380849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University