View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3795_high_10 (Length: 391)
Name: NF3795_high_10
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 9839718 - 9839364
Alignment:
| Q |
19 |
agatagaagcagttagagttagcaggtatatgatcaactaaactcatgtatataccttcatgtttgttttattaattcagtgattatggttccttcacat |
118 |
Q |
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| T |
9839718 |
agatagaagcagttagagttagcaggtatatgatcaattaaactcatgtatataccttcatgtttgtcttattaattcagtgattatggttccttcacat |
9839619 |
T |
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| Q |
119 |
gccacctactattcttgtggcaaaagttatctttatcctttagtttgttaatgagtagcaaaaggtttctatctttagtttaaactaaggttttaaattg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9839618 |
gccacctactattcttgtggcaaaagttatctttatccttaagtttgttaatgagtagcaaaaggtttctatctttagtttaaactaaggttttaaattg |
9839519 |
T |
|
| Q |
219 |
cagtgtacaaccgagattgtgcctgttgtatacgaggttttcgatgcctttggaacctcagcgcgactgtaattgcagccacatcgaccatatttgttta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9839518 |
cagtgtacaaccgagattgtgcctgttgtatacgaggttttcgatgcctttggaacctcagcgcgactgtaattgcagccacatcgaccatatttgttta |
9839419 |
T |
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| Q |
319 |
taacttcttgtgatatttaggattttgatgtaactatgccattttttaaaatctt |
373 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9839418 |
taacttcttgtgatacttaggattttgatgtaactatgccattttttaaaatctt |
9839364 |
T |
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