View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3795_high_12 (Length: 379)
Name: NF3795_high_12
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 165 - 366
Target Start/End: Original strand, 53251149 - 53251350
Alignment:
| Q |
165 |
gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53251149 |
gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc |
53251248 |
T |
|
| Q |
265 |
ttccagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53251249 |
ttccagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt |
53251348 |
T |
|
| Q |
365 |
cc |
366 |
Q |
| |
|
|| |
|
|
| T |
53251349 |
cc |
53251350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 165 - 366
Target Start/End: Original strand, 53236731 - 53236932
Alignment:
| Q |
165 |
gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc |
264 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53236731 |
gctggtttccttttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggagaacagttttagttgctttcattatttcttcaacagatc |
53236830 |
T |
|
| Q |
265 |
ttccagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53236831 |
ttccagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaacttttgtattccttttctcaatagctcaatctcttctttagt |
53236930 |
T |
|
| Q |
365 |
cc |
366 |
Q |
| |
|
|| |
|
|
| T |
53236931 |
cc |
53236932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 53250930 - 53250996
Alignment:
| Q |
18 |
gctctttcctgcactacagaccacacctcttgctcaaaaactccttgagagtattccgaactgatgc |
84 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53250930 |
gctctttcctgcactgcagaccacacctcttgctcaaaaactccttgagagtcttccgaactgatgc |
53250996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 53236500 - 53236558
Alignment:
| Q |
18 |
gctctttcctgcactacagaccacacctcttgctcaaaaactccttgagagtattccga |
76 |
Q |
| |
|
||||||||||||||| |||||||| |||||| || ||||||||||||||| |||||| |
|
|
| T |
53236500 |
gctctttcctgcactgcagaccacggctcttgttctgaaactccttgagagtcttccga |
53236558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 168 - 366
Target Start/End: Original strand, 44740818 - 44741016
Alignment:
| Q |
168 |
ggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatcttc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44740818 |
ggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggagaagaacggttttagttgctttcattatttcttcaacagatcttc |
44740917 |
T |
|
| Q |
268 |
cagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagtcc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44740918 |
cagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaacttttgtattccttttctcaatagctcgatctcttctttagtcc |
44741016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 44740584 - 44740642
Alignment:
| Q |
18 |
gctctttcctgcactacagaccacacctcttgctcaaaaactccttgagagtattccga |
76 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| || ||||||||||||||| |||||| |
|
|
| T |
44740584 |
gctctttcctgcactgcagaccacgcctcttgttctgaaactccttgagagtcttccga |
44740642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University