View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3795_high_15 (Length: 353)
Name: NF3795_high_15
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 25795743 - 25795401
Alignment:
| Q |
1 |
tttcagtctaagttatctgtgctacataaattaagattatcatcataacaaagagaataacnnnnnnnnnnnnggtaccagaaagctgtgtagctgtaga |
100 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
25795743 |
tttcagtctgagttatatgtgctacataaattaagattatcatcataacaaagagaatagcaaaaagataaaaggtaccagaaagctgtgtagctataga |
25795644 |
T |
|
| Q |
101 |
attcaacccccaaagacataaaaagaagggaagcagatgaaaacaaggtttggcctaatctgagaatgaagctggcacttgtgcccacagagccaggtat |
200 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25795643 |
attcaactcccaaagacataaagagaagggaagcagatgaaaacaaagtctggcctaatctgagaatgaagctggcacttgtgcccacagagccaggtat |
25795544 |
T |
|
| Q |
201 |
ttcattcatgtaacttattctataaggttctgaactatataacttaaccatacaagcttatttctttcagctgaagcttcttttggtaacacaaaaacat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25795543 |
ttcattcatgtaacttattctataaggttctgaactatataacttaaccatacaagcttatttctttcagctgaagcttcttttggtaacacaaaaacat |
25795444 |
T |
|
| Q |
301 |
gacctataatatttaataacatctcacaatcacaacacctatg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25795443 |
gacctataatatttaataacatctcacaatcacaacacctatg |
25795401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University