View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3795_high_22 (Length: 252)
Name: NF3795_high_22
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 31855164 - 31854936
Alignment:
| Q |
17 |
acatttgatattacataggaaattatgaatcaaacgagagttggatctagcataagagactaagctcatacagtacgatgaatcaatatttgaaggttca |
116 |
Q |
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| T |
31855164 |
acatttgatattaaataggaaattatgtatcaaacgagagttggatctagcataagagactaagctcatacaatctgacgaatcaatgtttgaaggttca |
31855065 |
T |
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| Q |
117 |
cacatttaatatttaagtacaaaacttgtattaatttaggcttagatgcttaattgcactaaaagctctttacacctctctaagaataagttatgcaaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31855064 |
cacatttaatatttaagtacaaaacttgtattaatttaggcttagatgcttaattgcactaaaagctctttacacctctccaagaataagttatgcaaag |
31854965 |
T |
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| Q |
217 |
atcaaactatttcgccatagcctttgctt |
245 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31854964 |
atcaaactatttcgccatagcctttgctt |
31854936 |
T |
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