View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3795_low_14 (Length: 375)
Name: NF3795_low_14
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 624484 - 624230
Alignment:
| Q |
9 |
agcaaaggaggaagatgaagaagaagaatttgtgaggcaacatgagactattactaagcctatgagtcccatgaggaggtcatcagtcagtagtaacaat |
108 |
Q |
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| T |
624484 |
agcaatggaggaagatgaagaagaagaatttgtgaggcaacatgagactattactaagcctatgagtcccatgaggaggtcatcagtcagtagtaacaat |
624385 |
T |
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| Q |
109 |
aataatggttgggataacaagtgtctaagtgtnnnnnnngctaaagaaaatgatttgagaaaacatgaagctgcaatgaagagggagagagctcttgcat |
208 |
Q |
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| T |
624384 |
aataatggttgggataacaagtgtcaaagtgtaaaaaaagctaaagaaaatgatttgagaaaacatgaagctgcaatgaagagggagagagctcttgcat |
624285 |
T |
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| Q |
209 |
atgctttcaattatcagcaggtaaagttactcaactctctatatcctagttctat |
263 |
Q |
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| T |
624284 |
atgctttcaattatcaacaggtaaagttactcaactctctatatcctagttctat |
624230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 359
Target Start/End: Complemental strand, 624158 - 624127
Alignment:
| Q |
328 |
ttatcatttaaaatatcaaagagtgaataatg |
359 |
Q |
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| T |
624158 |
ttatcatttaaaatatcaaagagtgaataatg |
624127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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