View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3795_low_15 (Length: 360)
Name: NF3795_low_15
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 36677349 - 36677044
Alignment:
| Q |
16 |
atcagagaagttagattgtttataagttttatgaagaattagtatgagggacatattgttgcaacatttggtagagtttctaatgatcaaatgcttttaa |
115 |
Q |
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| T |
36677349 |
atcagagaagatagattgtttataagttttatgaagaattagtatgagggacatattgttgcaacatttggtaa-------------------cttttaa |
36677269 |
T |
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| Q |
116 |
ttgcattaatagtcattgttgaaagtgtgacaaaggacttacaatacaaacataatgtaatttaaaggtctatattgaggaaaaataacttaaaagatca |
215 |
Q |
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| T |
36677268 |
ttgca---atagtcgttgttgaaagtgtgacaaaggacttacaatacaaatataatgtaatttaaaggtccatatcgaaaaaaaataacttaaaagatca |
36677172 |
T |
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| Q |
216 |
atcgaggaaatgaatcaaactcaaaggaccgcatatgctaaaataaaataatagagtgatattgactaaaattgctttgattttatctaacaaccatcat |
315 |
Q |
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| T |
36677171 |
atcgaggaaatgaatcaaacttaaaggaccgcatatgctaaaataaaataatagagtgatattgactaaaattgctttgattttatctaacaaccatcat |
36677072 |
T |
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| Q |
316 |
tcaattaaccgtgtaaagttaatgatct |
343 |
Q |
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| T |
36677071 |
tcaattaaccgtgtaaagttaatgatct |
36677044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 37631945 - 37631825
Alignment:
| Q |
60 |
tgagggacatattgttgcaacatttggtagagtttctaatgatcaaatgcttttaattgcattaatagtcattgttgaaagtgtgacaaaggacttacaa |
159 |
Q |
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| T |
37631945 |
tgagggacatattgttgcatcatttagtaaagtttataatgattatatgctttcaattgc---acaagttgttgtacaaagtgagacaaatgactaacaa |
37631849 |
T |
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| Q |
160 |
tacaaacataatgtaatttaaagg |
183 |
Q |
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| T |
37631848 |
tgcaaacataatctaaattaaagg |
37631825 |
T |
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