View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3795_low_17 (Length: 349)
Name: NF3795_low_17
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 30348935 - 30348593
Alignment:
| Q |
1 |
atagagtggcatcataaaagcctattcaccaaaaaatcatcgtaaagccctactagcattctttaacaaacacttgtgggaaaataaaagttaaaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30348935 |
atagagtggcatcataaaagcctattcaccaaaaaatcatcgtaaagccctactagtattctttaacaaacacttgtgggaaaataaaagttaaaagagt |
30348836 |
T |
|
| Q |
101 |
cttgcaatgatcattggtcttccaagcaataactatttcaaactattatgattttattaaatttttcagtaccnnnnnnnnagaggatttacaataccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30348835 |
cttgcaatgatcattggtcttccaagcaataactatttcaaactattatgattttattaaatttttcagtaccttttttttagaggatttacaataccaa |
30348736 |
T |
|
| Q |
201 |
ttaggttgtacgccatcggctcaagatgatcttcactttagcaagatttattgatgcactgtacctaaaagttctgcatacacatttaatgatatttaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30348735 |
ttaggttgtacgccatcggctcaagatgaccttcactttagcaagatttattgatgcactgtacctaaaagttctgcatacacatttaatgatatttaaa |
30348636 |
T |
|
| Q |
301 |
taatgtgtcaaattcttgttcaaaaatgatgatggtgatgatg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30348635 |
taatgtgtcaaattcttgttcaaaaatgatgatggtgatgatg |
30348593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University