View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3795_low_2 (Length: 602)
Name: NF3795_low_2
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 26 - 601
Target Start/End: Complemental strand, 4947548 - 4946973
Alignment:
| Q |
26 |
ttcagcctttaatatgaatcattaatttttcgttttctagtagtatatgttgatatataaatggtttgaatggagttacattataataacatgtttatga |
125 |
Q |
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| T |
4947548 |
ttcagcctttaatatgaatcattaatttttcgttttcttgtagtatatgttgatatataaatggtttgaatggagttacattataataacatgtttatga |
4947449 |
T |
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| Q |
126 |
gttgaataagatcataccttcttgaggccaggaacaatggctgaaagagcgatgaaacttcgggtaagcttttcccttcgttttctttcggccattacat |
225 |
Q |
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| T |
4947448 |
gttgaataagatcataccttcttgaggccaggaacaatggctgaaagagcgatgaaacttcgggtaagcttttcccttcgttttctttcggccattacat |
4947349 |
T |
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| Q |
226 |
gttctcgagcttgagaagtgtttctggtctgattcgcttggttatcataattggaaaatattttttgatcttcataagaaccttgagaaaccaaagctgg |
325 |
Q |
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| T |
4947348 |
gttctcgagcttgagcagtgtttctggtctgattcgcttggttatcataattggaaaatattttttgatcttcataagaaccttgagaaaccaaagctgg |
4947249 |
T |
|
| Q |
326 |
tagaaaatccttgttttcattaaaccttttctcgactttaggttttacatctgaataatcaaggttataaaattgctttgaagcaattggtgttgaactg |
425 |
Q |
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| T |
4947248 |
tagaaaatccttgttttcattacaccttttcccgactttaggttttacatctgaataatcaaggttataaaattgctttgaagcaattggtgttgaactg |
4947149 |
T |
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| Q |
426 |
gagtgctcaaaagaaatgagttgaggtgatgactgggaagaaggggttctcgatgtcttgatcttcttggttggccttgtttgatcatcaggatgagttt |
525 |
Q |
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| T |
4947148 |
gagtgctcaaaagaaatgagttgaggtgatgactgggaagaaggggttatcgatgtcttgatcttcttggttggccttgtttgatcatcaggatgagttt |
4947049 |
T |
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| Q |
526 |
caactgggaaacaatttggtgtggtttcgttgtcatcaaagtgaaagccaaagttgtcgaatattcttggacatgc |
601 |
Q |
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| T |
4947048 |
caactgggaaacaatttggtgtcgtttcgttgtcatcaaagtgaaagccaaagttgtcgaataatgttggagatgc |
4946973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 40441838 - 40441933
Alignment:
| Q |
140 |
taccttcttgaggccaggaacaatggctgaaagagcgatgaaacttcgggtaagcttttcccttcgttttctttcggccattacatgttctcgagc |
235 |
Q |
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| T |
40441838 |
tacctttttgagtccaggaagaatagaggaaagtgcaatgaatctctggctaagcttttcccttcgttttctttcggcgataacatgatctcgagc |
40441933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 40426750 - 40426845
Alignment:
| Q |
140 |
taccttcttgaggccaggaacaatggctgaaagagcgatgaaacttcgggtaagcttttcccttcgttttctttcggccattacatgttctcgagc |
235 |
Q |
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|||||| ||||| ||||||| || | |||||||| ||||| || || ||||||||||||||||| ||||||||||||| ||||| ||| |||| |
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| T |
40426750 |
tacctttttgagtccaggaagaagagatgaaagagaaatgaatctctggctaagcttttcccttcgtcttctttcggccataacatgatcttgagc |
40426845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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