View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3795_low_22 (Length: 280)

Name: NF3795_low_22
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3795_low_22
NF3795_low_22
[»] chr8 (3 HSPs)
chr8 (77-273)||(27104619-27104815)
chr8 (30-65)||(11630026-11630061)
chr8 (30-70)||(8004821-8004861)
[»] chr2 (2 HSPs)
chr2 (1-64)||(5567590-5567653)
chr2 (30-65)||(10375726-10375761)
[»] chr6 (1 HSPs)
chr6 (1-68)||(23268429-23268496)
[»] chr4 (3 HSPs)
chr4 (30-68)||(21191488-21191526)
chr4 (5-64)||(12104334-12104392)
chr4 (7-64)||(32178356-32178412)
[»] chr1 (1 HSPs)
chr1 (13-49)||(40811118-40811154)
[»] chr3 (1 HSPs)
chr3 (8-64)||(1325680-1325735)


Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 77 - 273
Target Start/End: Original strand, 27104619 - 27104815
Alignment:
Q  77 acaagagtcgataatcgtgtctttagccatttatttatggtgtcgaacatctcaccacttgacccaatcacatgttaactaacaagatattattatttgt 176  Q
    ||||||||| || ||| |||||||| ||||| ||||||||| ||  |||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  27104619 acaagagtcaatgatcatgtctttaaccattcatttatggtatctgacatcttaccacttgaatcaatcacatgttaactaacaagatattattatttgt 27104718  T
Q  177 attgggattatagtatatttagcattataagtttt-ttgttcttaatttatgatgaaagaaattaaccacttattttattcccactttgtctctgctc 273  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| |||| ||||||||||||    
T  27104719 attgagattatagtatatttagcgttataagttttgttgttcttaatttatgctaaaagaaattaaccacttattttatt-ccacgttgtctctgctc 27104815  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 11630061 - 11630026
Alignment:
Q  30 gtatgccacctatggtggtttacctatcaccactct 65  Q
    |||||||||||||||||||||||||||||| |||||    
T  11630061 gtatgccacctatggtggtttacctatcactactct 11630026  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 8004821 - 8004861
Alignment:
Q  30 gtatgccacctatggtggtttacctatcaccactctttttt 70  Q
    |||||||||||||||  |||||||||||| |||||||||||    
T  8004821 gtatgccacctatgggtgtttacctatcatcactctttttt 8004861  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5567653 - 5567590
Alignment:
Q  1 tttgacatgttggaaggtggataaggatcgtatgccacctatggtggtttacctatcaccactc 64  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  5567653 tttgacatgttggaaggtggataaggatggtatgccacctattgtggtttacctatcaccactc 5567590  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 10375761 - 10375726
Alignment:
Q  30 gtatgccacctatggtggtttacctatcaccactct 65  Q
    |||||||||||||||||||||||||||||| |||||    
T  10375761 gtatgccacctatggtggtttacctatcactactct 10375726  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 23268429 - 23268496
Alignment:
Q  1 tttgacatgttggaaggtggataaggatcgtatgccacctatggtggtttacctatcaccactctttt 68  Q
    ||||||||||||||||||| ||||| || |||||||||||| |||||  | |||||||||||||||||    
T  23268429 tttgacatgttggaaggtgtataagcatggtatgccacctaaggtgggatgcctatcaccactctttt 23268496  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 21191526 - 21191488
Alignment:
Q  30 gtatgccacctatggtggtttacctatcaccactctttt 68  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  21191526 gtatgccacctatggtggtttacctatcactactctttt 21191488  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 12104392 - 12104334
Alignment:
Q  5 acatgttggaaggtggataaggatcgtatgccacctatggtggtttacctatcaccactc 64  Q
    |||| |||||||||| ||| |||| || ||||||||| ||||||||||||||||||||||    
T  12104392 acatattggaaggtgtata-ggatggtttgccacctaaggtggtttacctatcaccactc 12104334  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 32178412 - 32178356
Alignment:
Q  7 atgttggaaggtggataaggatcgtatgccacctatggtggtttacctatcaccactc 64  Q
    ||||||||||||| ||||| || || ||||||||| |||||||||||||||| |||||    
T  32178412 atgttggaaggtgtataag-atggtctgccacctaaggtggtttacctatcatcactc 32178356  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 40811118 - 40811154
Alignment:
Q  13 gaaggtggataaggatcgtatgccacctatggtggtt 49  Q
    |||||||||||||||| ||||||||||||||||||||    
T  40811118 gaaggtggataaggatggtatgccacctatggtggtt 40811154  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 1325735 - 1325680
Alignment:
Q  8 tgttggaaggtggataaggatcgtatgccacctatggtggtttacctatcaccactc 64  Q
    |||||||||||| ||||| || |||||||||| | |||||||||||||||| |||||    
T  1325735 tgttggaaggtgtataag-atggtatgccaccaaaggtggtttacctatcatcactc 1325680  T

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