View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3795_low_25 (Length: 252)

Name: NF3795_low_25
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3795_low_25
NF3795_low_25
[»] chr3 (5 HSPs)
chr3 (1-204)||(34373114-34373317)
chr3 (35-119)||(27616127-27616211)
chr3 (35-119)||(34516569-34516653)
chr3 (35-113)||(34504984-34505062)
chr3 (123-161)||(34515210-34515248)
[»] chr2 (4 HSPs)
chr2 (1-204)||(10525980-10526183)
chr2 (1-204)||(10532803-10533006)
chr2 (65-141)||(10524687-10524762)
chr2 (66-143)||(10530992-10531068)
[»] scaffold1215 (1 HSPs)
scaffold1215 (1-175)||(1-175)
[»] chr7 (1 HSPs)
chr7 (4-204)||(15741372-15741572)
[»] chr6 (1 HSPs)
chr6 (4-204)||(1574804-1575004)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 34373114 - 34373317
Alignment:
Q  1 tgtgtgtatatgatatcatattctcggcaatttaaaaggatcacgtaacaagagatttactcaataatccatcgttattgtctatctgaatatgaaaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34373114 tgtgtgtatatgatatcatattctcggcaatttaaaaggatcacgtaacaagagatttactcaataatccatcgttattgtctttctgaatatgaaaact 34373213  T
Q  101 ctcattccaaaccatgaataaacttttattgctaaaattacttgactgttaatgtggtgtgacagtggttattatattcctgtgatatggtttacaatta 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34373214 ctcattccaaaccatgaataaatttttattgctaaaattacttgactgttaatgtggtgtgacagtggttattatattcctgtgatatggtttacaatta 34373313  T
Q  201 cata 204  Q
    ||||    
T  34373314 cata 34373317  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 27616211 - 27616127
Alignment:
Q  35 aaaggatcacgtaacaagagatttactcaataatccatcgttattgtctatctgaatatgaaaactctcattccaaaccatgaat 119  Q
    |||||| || ||| ||||||||||||||| ||||  ||| ||||| ||| ||||||||| |||||| |||||||||||| |||||    
T  27616211 aaaggaacatgtagcaagagatttactcattaatttatcattattttctttctgaatataaaaactttcattccaaaccttgaat 27616127  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 34516653 - 34516569
Alignment:
Q  35 aaaggatcacgtaacaagagatttactcaataatccatcgttattgtctatctgaatatgaaaactctcattccaaaccatgaat 119  Q
    ||||||||| ||| |||||| |||||||| ||||   || ||||| ||| | |||||||||||||| |||||||||||| |||||    
T  34516653 aaaggatcatgtagcaagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaaccttgaat 34516569  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 34505062 - 34504984
Alignment:
Q  35 aaaggatcacgtaacaagagatttactcaataatccatcgttattgtctatctgaatatgaaaactctcattccaaacc 113  Q
    |||||| || ||| ||||||||||||||| ||||   || ||||| ||| ||||||||| |||||| ||||||||||||    
T  34505062 aaaggaacatgtagcaagagatttactcattaatttttcattattttctttctgaatataaaaactttcattccaaacc 34504984  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 34515248 - 34515210
Alignment:
Q  123 cttttattgctaaaattacttgactgttaatgtggtgtg 161  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  34515248 cttttattgccagaattacttgactgttaatgtggtgtg 34515210  T

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Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 10526183 - 10525980
Alignment:
Q  1 tgtgtgtatatgatatcatattctcggcaatttaaaaggatcacgtaacaagagatttactcaataatccatcgttattgtctatctgaatatgaaaact 100  Q
    ||||||||||||||||| || |||| |  |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||    
T  10526183 tgtgtgtatatgatatcctactctcagatatttaaaaggatcacgtaacaagagatttactaaataatctatcattattgtctttctgaatatgaaaact 10526084  T
Q  101 ctcattccaaaccatgaataaacttttattgctaaaattacttgactgttaatgtggtgtgacagtggttattatattcctgtgatatggtttacaatta 200  Q
    ||||||||||| |||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  10526083 ctcattccaaaacatgaataaatttctgttgctagaattacttgactgttaatgtggtgtgacagtggttattatattcctgcgatatggtttacagtta 10525984  T
Q  201 cata 204  Q
    ||||    
T  10525983 cata 10525980  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 10533006 - 10532803
Alignment:
Q  1 tgtgtgtatatgatatcatattctcggcaatttaaaaggatcacgtaacaagagatttactcaataatccatcgttattgtctatctgaatatgaaaact 100  Q
    ||||||||||||||||| || ||||||  |||||||||||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||||    
T  10533006 tgtgtgtatatgatatcctactctcggatatttaaaaggatcacgtaacaagagatttactcaataatttatcattattgtctttctgaatatgaaaact 10532907  T
Q  101 ctcattccaaaccatgaataaacttttattgctaaaattacttgactgttaatgtggtgtgacagtggttattatattcctgtgatatggtttacaatta 200  Q
    ||||||||||| |||||||||| || | |||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||    
T  10532906 ctcattccaaaacatgaataaatttctgttgctagaattacttgactgttaatgtggtgtgacagtggttattatgttcctgcgatatggtttacagtta 10532807  T
Q  201 cata 204  Q
    ||||    
T  10532806 cata 10532803  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 10524762 - 10524687
Alignment:
Q  65 taatccatcgttattgtctatctgaatatgaaaactctcattccaaaccatgaataaacttttattgctaaaattac 141  Q
    ||||| ||| ||||||||| |||| ||||||||||| |||||||||||| ||||| || ||||||||||| ||||||    
T  10524762 taatctatcattattgtctttctggatatgaaaactttcattccaaaccttgaatgaa-ttttattgctagaattac 10524687  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 10531068 - 10530992
Alignment:
Q  66 aatccatcgttattgtctatctgaatatgaaaactctcattccaaaccatgaataaacttttattgctaaaattactt 143  Q
    |||| ||| ||||||||| |||| ||||||||||| |||||||||| | ||||| || ||||||||||| ||||||||    
T  10531068 aatctatcattattgtctttctggatatgaaaactttcattccaaatcttgaattaa-ttttattgctagaattactt 10530992  T

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Target: scaffold1215 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 175 - 1
Alignment:
Q  1 tgtgtgtatatgatatcatattctcggcaatttaaaaggatcacgtaacaagagatttactcaataatccatcgttattgtctatctgaatatgaaaact 100  Q
    ||||||||||||||||| || |||| |  |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||    
T  175 tgtgtgtatatgatatcctactctcagatatttaaaaggatcacgtaacaagagatttactaaataatctatcattattgtctttctgaatatgaaaact 76  T
Q  101 ctcattccaaaccatgaataaacttttattgctaaaattacttgactgttaatgtggtgtgacagtggttattat 175  Q
    ||||||||||| |||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||    
T  75 ctcattccaaaacatgaataaatttctgttgctagaattacttgactgttaatgtggtgtgacagtggttattat 1  T

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Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 15741372 - 15741572
Alignment:
Q  4 gtgtatatgatatcatattctcggcaatttaaaaggatcacgtaacaagagatttactcaataatccatcgttattgtctatctgaatatgaaaactctc 103  Q
    ||||||||||||||||| |||||  |||||||| | |||| ||||| |||||||||||| |||||| ||| |||||| || || ||||||| || |||||    
T  15741372 gtgtatatgatatcatactctcgaaaatttaaatgaatcatgtaactagagatttactccataatctatcattattggctttcggaatatgcaacctctc 15741471  T
Q  104 attccaaaccatgaataaacttttattgctaaaattacttgactgttaatgtggtgtgacagtggttattatattcctgtgatatggtttacaattacat 203  Q
    ||||||||| ||||||||| || | |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15741472 attccaaactatgaataaatttatgttgctagaattacttgactgttaatgcggtgtgacagtggttattatattcctgcgatatggtttacaattacat 15741571  T
Q  204 a 204  Q
    |    
T  15741572 a 15741572  T

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Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 1575004 - 1574804
Alignment:
Q  4 gtgtatatgatatcatattctcggcaatttaaaaggatcacgtaacaagagatttactcaataatccatcgttattgtctatctgaatatgaaaactctc 103  Q
    ||||||||||||||||| |||||  |||||||| | |||| ||||| |||||||||||| |||||| ||| |||||| || || ||||||| || |||||    
T  1575004 gtgtatatgatatcatactctcgaaaatttaaatgaatcatgtaactagagatttactccataatctatcattattggctttcggaatatgcaacctctc 1574905  T
Q  104 attccaaaccatgaataaacttttattgctaaaattacttgactgttaatgtggtgtgacagtggttattatattcctgtgatatggtttacaattacat 203  Q
    ||||||||| ||||||||| || | |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1574904 attccaaactatgaataaatttatgttgctagaattacttgactgttaatgcggtgtgacagtggttattatattcctgcgatatggtttacaattacat 1574805  T
Q  204 a 204  Q
    |    
T  1574804 a 1574804  T

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