View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3795_low_3 (Length: 597)

Name: NF3795_low_3
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3795_low_3
NF3795_low_3
[»] chr2 (4 HSPs)
chr2 (18-587)||(35738577-35739146)
chr2 (245-283)||(19298185-19298223)
chr2 (245-283)||(40468706-40468744)
chr2 (245-285)||(8029624-8029664)
[»] chr5 (4 HSPs)
chr5 (22-285)||(22165594-22165840)
chr5 (405-458)||(22165864-22165917)
chr5 (245-283)||(6794399-6794437)
chr5 (245-283)||(23082943-23082981)
[»] chr8 (2 HSPs)
chr8 (468-584)||(19793717-19793833)
chr8 (245-283)||(13462510-13462548)
[»] scaffold0225 (1 HSPs)
scaffold0225 (509-584)||(9999-10075)
[»] chr3 (4 HSPs)
chr3 (509-584)||(20963382-20963458)
chr3 (245-283)||(17514343-17514381)
chr3 (245-283)||(32304886-32304924)
chr3 (245-283)||(34817735-34817773)
[»] chr7 (4 HSPs)
chr7 (245-283)||(17278804-17278842)
chr7 (245-283)||(30766049-30766087)
chr7 (523-584)||(28264459-28264520)
chr7 (405-453)||(8685047-8685095)
[»] chr6 (3 HSPs)
chr6 (245-283)||(12261105-12261143)
chr6 (245-282)||(16146482-16146519)
chr6 (245-282)||(27129247-27129284)
[»] chr1 (2 HSPs)
chr1 (245-283)||(36142518-36142556)
chr1 (245-283)||(47112497-47112535)
[»] chr4 (2 HSPs)
chr4 (245-285)||(9086951-9086991)
chr4 (245-285)||(40680855-40680895)


Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Complemental strand, 35739146 - 35738577
Alignment:
Q  18 ctttaaaaattggatctctcacatgaaccttaacataagaccaccaaaatcatcagtaaattaaacaacaacaccaccttaaacatcaagtacattctgc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35739146 ctttaaaaattggatctctcacatgaaccttaacataagaccaccaaaatcatcagtaaattaaacaacagcaccaccttaaacatcaagtacattctgc 35739047  T
Q  118 agaatgagcgattcaacgatttgagttttgagagaagagattgaggttgcaaacacaagaggatttcggttgtagattcatcgaaggatgattcaaagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  35739046 agaatgagcgattcaacgatttgagttttgagagaagagattgaggttgcaaacacaagaggatttcagttggagattcatcgaaggatgattcaaagaa 35738947  T
Q  218 gcaggatttggatttgggaaataggtatgaagattttggttgattttccaattgttagtgaatctgaagatgaaattttttggaaaataggtacgtgtga 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35738946 gcaggatttggatttgggaaataggtatgaagattttggttgattttccaattgttagtgaatctgaagatgaaattttttggaaaataggtacgtgtaa 35738847  T
Q  318 taatggatataacattacaatccccttcctgctttaaattattatttggttctgccatttaattgatttttccttctaaataggttggaagattttgttt 417  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35738846 taatggatataacattacaatccccttcctgctttaaattataatttggttctgccatttaattgatttttccttctaaataggttggaagattttgttt 35738747  T
Q  418 gatttggtttgtggagattgagaatgtgtgttgtttgaaatagaattgggaattgagaagcaataaaggaagatttcgtagttgaattcttgtgatgaga 517  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35738746 gatttggtttgtggagattgagaatgtatgttgtttgaaatagaattgggaattgagaagtaataaaggaagatttcgtagttgaattcttgtgatgaga 35738647  T
Q  518 gaatgaagaagatgaagggacaatccctgatggtgaaccacaaagcaaggacattgttgttgttgatatt 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35738646 gaatgaagaagatgaagggacaatccctgatggtgaaccacaaagcaaggacattgttgttgttgatatt 35738577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 19298185 - 19298223
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  19298185 tgaagattttggttgattttcccattgttattgaatctg 19298223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 40468706 - 40468744
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  40468706 tgaagattttggttgattttcccattgttattgaatctg 40468744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 8029624 - 8029664
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctgaa 285  Q
    |||||||||||||||||||| | ||||||| ||||||||||    
T  8029624 tgaagattttggttgatttttctattgttattgaatctgaa 8029664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 22 - 285
Target Start/End: Original strand, 22165594 - 22165840
Alignment:
Q  22 aaaaattggatctctcacatgaaccttaacataagaccaccaaaatcatcagtaaattaaacaacaacaccaccttaaacatcaagtacattctgcagaa 121  Q
    ||||||| ||||| |||||| ||| ||||||||||| || ||||||||| ||||||||||||| ||||| ||||||||                 || ||    
T  22165594 aaaaatttgatctttcacataaactttaacataagagcatcaaaatcataagtaaattaaacagcaacaacaccttaa-----------------cataa 22165676  T
Q  122 tgagcgattcaacgatttgagttttgagagaagagattgaggttgcaaacacaagaggatttcggttgtagattcatcgaaggatgattcaaagaagcag 221  Q
    |||||| || ||| |||||||||||||||||||||||||||   | ||| ||||||||||||| |||  |||||||||| ||| |||| |||| ||| ||    
T  22165677 tgagcggttgaacaatttgagttttgagagaagagattgagaacgtaaatacaagaggatttcagtttgagattcatcgtagggtgatacaaacaaggag 22165776  T
Q  222 gatttggatttgggaaataggtatgaagattttggttgattttccaattgttagtgaatctgaa 285  Q
    |||||||||||||||||||| |  |||| |||||||||||||||| |||||||||| |||||||    
T  22165777 gatttggatttgggaaatagcttggaaggttttggttgattttcccattgttagtggatctgaa 22165840  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 22165864 - 22165917
Alignment:
Q  405 gaagattttgtttgatttggtttgtggagattgagaatgtgtgttgtttgaaat 458  Q
    |||||||||| |||||||| ||| |||||||||||||| |||||||||||||||    
T  22165864 gaagattttggttgatttgatttatggagattgagaatttgtgttgtttgaaat 22165917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 6794399 - 6794437
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  6794399 tgaagattttggttgattttcccattgttattgaatctg 6794437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 23082981 - 23082943
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  23082981 tgaagattttggttgattttcccattgttattgaatctg 23082943  T

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Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 468 - 584
Target Start/End: Complemental strand, 19793833 - 19793717
Alignment:
Q  468 aattgagaagcaataaaggaagatttcgtagttgaattcttgtgatgagagaatgaagaagatgaagggacaatccctgatggtgaaccacaaagcaagg 567  Q
    |||||||||| || |||||||||||| | |||||||||||||||||||||||||||||||||||||||||   || |||||||||||||||| |||||||    
T  19793833 aattgagaagaaagaaaggaagatttagaagttgaattcttgtgatgagagaatgaagaagatgaagggaacgtcactgatggtgaaccacacagcaagg 19793734  T
Q  568 acattgttgttgttgat 584  Q
    ||||||||| |||||||    
T  19793733 acattgttgctgttgat 19793717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 13462548 - 13462510
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  13462548 tgaagattttggttgattttcccattgttattgaatctg 13462510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 509 - 584
Target Start/End: Complemental strand, 10075 - 9999
Alignment:
Q  509 gtgatgagagaatgaa-gaagatgaagggacaatccctgatggtgaaccacaaagcaaggacattgttgttgttgat 584  Q
    |||||| ||||||||| |||||||||||||  ||| |||||||||||||||||||||||||  |||||||| |||||    
T  10075 gtgatgggagaatgaaagaagatgaagggaacatcactgatggtgaaccacaaagcaaggaagttgttgttcttgat 9999  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 509 - 584
Target Start/End: Original strand, 20963382 - 20963458
Alignment:
Q  509 gtgatgagagaatgaa-gaagatgaagggacaatccctgatggtgaaccacaaagcaaggacattgttgttgttgat 584  Q
    |||||| ||||||||| ||| |||||| ||  ||| |||||||||||||||||||||||||  |||||||| |||||    
T  20963382 gtgatgggagaatgaaagaatatgaagagaacatcactgatggtgaaccacaaagcaaggaagttgttgttcttgat 20963458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 17514343 - 17514381
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  17514343 tgaagattttggttgattttcccattgttattgaatctg 17514381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 32304886 - 32304924
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  32304886 tgaagattttggttgattttcccattgttattgaatctg 32304924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 34817773 - 34817735
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  34817773 tgaagattttggttgattttcccattgttattgaatctg 34817735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 17278842 - 17278804
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  17278842 tgaagattttggttgattttcccattgttattgaatctg 17278804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 30766087 - 30766049
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  30766087 tgaagattttggttgattttcccattgttattgaatctg 30766049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 584
Target Start/End: Original strand, 28264459 - 28264520
Alignment:
Q  523 aagaagatgaagggacaatccctgatggtgaaccacaaagcaaggacattgttgttgttgat 584  Q
    ||||||||||||| |  ||| || ||||||||||||||||||||||  |||||||| |||||    
T  28264459 aagaagatgaaggaaacatcactaatggtgaaccacaaagcaaggaagttgttgttcttgat 28264520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 453
Target Start/End: Complemental strand, 8685095 - 8685047
Alignment:
Q  405 gaagattttgtttgatttggtttgtggagattgagaatgtgtgttgttt 453  Q
    |||||||||| ||||||||||||  ||||||||||||  ||||||||||    
T  8685095 gaagattttggttgatttggtttagggagattgagaaattgtgttgttt 8685047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 12261105 - 12261143
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  12261105 tgaagattttggttgattttcccattgttattgaatctg 12261143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 16146519 - 16146482
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatct 282  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  16146519 tgaagattttggttgattttcccattgttattgaatct 16146482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 27129284 - 27129247
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatct 282  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  27129284 tgaagattttggttgattttcccattgttattgaatct 27129247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 36142556 - 36142518
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  36142556 tgaagattttggttgattttcccattgttattgaatctg 36142518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 47112535 - 47112497
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctg 283  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  47112535 tgaagattttggttgattttcccattgttattgaatctg 47112497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 9086951 - 9086991
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctgaa 285  Q
    |||||||||||||||||||||  ||||||| ||||||||||    
T  9086951 tgaagattttggttgattttctcattgttattgaatctgaa 9086991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 40680895 - 40680855
Alignment:
Q  245 tgaagattttggttgattttccaattgttagtgaatctgaa 285  Q
    |||||||||||||||||||| | ||||||| ||||||||||    
T  40680895 tgaagattttggttgatttttccattgttattgaatctgaa 40680855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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