View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3795_low_30 (Length: 238)
Name: NF3795_low_30
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_low_30 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 3064443 - 3064664
Alignment:
| Q |
17 |
aaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggattgcagaatcag |
116 |
Q |
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| T |
3064443 |
aaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggattgcagaatcag |
3064542 |
T |
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| Q |
117 |
tgagcagaggacaaaggaaagcaaagagggagtcatgtctagattgtagaatcaatatgatccatatgatttttatagtaaataaatatctcttgtttca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3064543 |
tgagcagaggacaaaggaaagcaaagagggagtcatgtctagattgtagaatcaatatgatccatatgatttttatagtaaataaatatctcttgtttca |
3064642 |
T |
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| Q |
217 |
atcaaaattaaagcactgagcc |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
3064643 |
atcaaaattaaagcactgagcc |
3064664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 3033995 - 3033875
Alignment:
| Q |
17 |
aaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggattgcagaatcag |
116 |
Q |
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|||| ||||||| |||| | ||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||||| || |||||| |||||||| |
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| T |
3033995 |
aaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaacaccgacggattgaagaatcag |
3033896 |
T |
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| Q |
117 |
tgagcagaggacaaaggaaag |
137 |
Q |
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| T |
3033895 |
cgagtataggagaaaggaaag |
3033875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 3042035 - 3041936
Alignment:
| Q |
17 |
aaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggattgcagaatcag |
116 |
Q |
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| T |
3042035 |
aaagtaaccatgtagagttgctggtgtcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaacaccgatggattgaagaatcag |
3041936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 3066484 - 3066555
Alignment:
| Q |
21 |
caaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctac |
92 |
Q |
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| T |
3066484 |
caaccatgaagaggtgttggtttgtgcagtaaaagaatcaccaatggctatagtacttttggtttgagctac |
3066555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 3072138 - 3072246
Alignment:
| Q |
17 |
aaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggattgcagaatcag |
116 |
Q |
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||||||||||||||||||| |||||| || | || | |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
3072138 |
aaagcaaccatggagaggtgttggtttctgaaatatgaaaatcaccagctgctatggtacttttggtttgagctacaacactgatggattgaagaatcag |
3072237 |
T |
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| Q |
117 |
tgagcagag |
125 |
Q |
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|||| |||| |
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| T |
3072238 |
tgagaagag |
3072246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 3054857 - 3054755
Alignment:
| Q |
17 |
aaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggattgcagaatcag |
116 |
Q |
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|||||||||||| |||| | || |||| ||||||||||||||||||||| |||| || ||||||||||||||| |||| ||||||||| |||||||| |
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| T |
3054857 |
aaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatggctatagtgtttttggtttgagctagaacatggatggattgaagaatcag |
3054758 |
T |
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| Q |
117 |
tga |
119 |
Q |
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||| |
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| T |
3054757 |
tga |
3054755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 3068467 - 3068516
Alignment:
| Q |
17 |
aaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatg |
66 |
Q |
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||||||||||||||||| | | ||| | |||||||||||||||||||||| |
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| T |
3068467 |
aaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
3068516 |
T |
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