View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3795_low_31 (Length: 237)
Name: NF3795_low_31
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 50607539 - 50607757
Alignment:
| Q |
1 |
tatttaattcatgatgttatgatatttaccgtatcattttcacgaagaccgtgcaatccacgcaaaccccacaagctctatataatatggaagcgacaaa |
100 |
Q |
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| T |
50607539 |
tatttaattcatgatgttatgatatttaccgtatcattttcacgaagaccgtgcaatccacgcaaaccccacaagctctatataatatggaagcgacaaa |
50607638 |
T |
|
| Q |
101 |
gcagtttgcttcatcacacacacatacatacatagacattagagaagaataagatgcagaatctgcaagagaaggcttctgaatggagtggtgttgagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50607639 |
gcagtttgcttcatcacacacacatacatacatagacattag---agaataagatgcagaatctgcaagagaaggcttctgaatggagtggtgttgagac |
50607735 |
T |
|
| Q |
201 |
aaatcatgcttttgccattgat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
50607736 |
aaatcatgcttttgccattgat |
50607757 |
T |
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