View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3795_low_4 (Length: 506)
Name: NF3795_low_4
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 293
Target Start/End: Complemental strand, 26021001 - 26020706
Alignment:
| Q |
3 |
aagcaaaggcatgaacatgaattttaaatttacaaataaaatattcctctcaaaaatgtgattactacatgttaatttcatgtgcatcacaacgatcgca |
102 |
Q |
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| T |
26021001 |
aagcaaaagcatcaacatgaattttaaatttgcaagtaaaatattcctctcaaaaatgtgattcctacatgttaatttcatgtgcatcacaacgatcgca |
26020902 |
T |
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| Q |
103 |
tgnnnnnnntgtatgtttttatcgaagtttatgatgcgtgtccatctacgaggaaacacacaaattgtacttgtgtaatat-----cacataacattagc |
197 |
Q |
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| T |
26020901 |
tgaaaaaaatgtatgtttttatcgaagtttatgatgcgtgtccatctatgaggaaacacacggattgtatttgtgtaacataatgtcacttaacattggc |
26020802 |
T |
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| Q |
198 |
caatttaagggtgaaatataataatacaattttgtcaaacataaaaatgtgtgtgcgtgtgaaagagaatagttaaattgacttgtttgtcacaat |
293 |
Q |
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| T |
26020801 |
caatttaagtgtgaaatataataatacaattttgtcaaacataaaaatgtgtgcgcgcgtgaaagagaatagttaaattgacttgtttgtcacaat |
26020706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 370 - 489
Target Start/End: Complemental strand, 26020667 - 26020548
Alignment:
| Q |
370 |
tatatatgtccaacttgagtgtcgagagctaaccattacaattagtttgcagcagttacttgtgtattcttatacaaataccacataggtagttcgagga |
469 |
Q |
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| T |
26020667 |
tatatatgtccaacttgagtgttgagagctaaccattacaattagtttgcagcagttacttgtgtattcttatacaaatatcacataggtagttcgagga |
26020568 |
T |
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| Q |
470 |
acttgtgctctcccaatcaa |
489 |
Q |
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| T |
26020567 |
acttgtactctaccactcaa |
26020548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 45 - 306
Target Start/End: Original strand, 26229113 - 26229380
Alignment:
| Q |
45 |
attcctctcaaaaatgtgattactacatgttaatttcatgtgcatcacaacgatcgcatgnnnnnnnt-----gtatgtttttatcgaagtttatgatgc |
139 |
Q |
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| T |
26229113 |
attcctctaaaaaatgtgattcctacatgttaatttcatatgcatcacaaggatcgcatgaagaaaaaaaaaagtatgtttttattggagtttatgacgc |
26229212 |
T |
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| Q |
140 |
gtgtccatctacgaggaaacacacaaattgtacttgtgtaatat-----cacataacattagccaatttaagggtgaaatataataatacaattttgtca |
234 |
Q |
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| T |
26229213 |
gtgtccatctatgaggaaacacacggattgcacttgtgtaacataatgtcacataacattggccaatttaaatgtgaaatatgacaatacaattttatca |
26229312 |
T |
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| Q |
235 |
aacataaaaatgtgtgtgcgtgtgaaagagaatagttaaattgacttgtttgtcacaattgtaatagccaat |
306 |
Q |
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| T |
26229313 |
aacataaaaatgtgt----tcatgaaagagaatagttaaattgacttgtttgtcacaattggattagccaat |
26229380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 377 - 489
Target Start/End: Complemental strand, 26233324 - 26233204
Alignment:
| Q |
377 |
gtccaacttgagtgtcgagagctaaccatta--------caattagtttgcagcagttacttgtgtattcttatacaaataccacataggtagttcgagg |
468 |
Q |
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| T |
26233324 |
gtccaacttgagtgtcgagagctaaccattattagcatgcaattagtttgcaacagttacttgtgtattcttatacaaataccacataggtagttcgagg |
26233225 |
T |
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| Q |
469 |
aacttgtgctctcccaatcaa |
489 |
Q |
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||||| | |||||||| |||| |
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| T |
26233224 |
aacttctactctcccactcaa |
26233204 |
T |
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