View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3795_low_5 (Length: 444)
Name: NF3795_low_5
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 38797147 - 38796701
Alignment:
| Q |
1 |
atacgcattgagctacaggagatcaagtagaacaatacagattttcttttacctaaatacagtttgcaatatatgtataatacaccnnnnnnntcttaca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38797147 |
atacacattgagctacaggagatcaagtagaacaatacagattttcttttacctaaatacagtttgcaatatatgtataatacaccaaaaaa-tcttaca |
38797049 |
T |
|
| Q |
101 |
ttgcttgaaaatcgagtttaagagtagtttataaacaacacacttgttattcctcttttacaaaagacagaaccgtgaagagttcacataaaatccaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
38797048 |
ttgcttgaaaatcgagtttaagagtagtttataaacaacacacttgttattcctcttttacaaaagacaaaaccgtgaagagttcacataaaacccaaag |
38796949 |
T |
|
| Q |
201 |
cggataatacttcgaaaactcaatgttatagatt-gaggttcgtaacattagtgcattaggtagaggttgaacttatgtcaaactcaagagcttgcatac |
299 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38796948 |
cggataatacttcgaaaactcaatgttatagattggaggttcgtaacattagtgcattaggtagaggttgaacttatgtcaaactcaagagcttgcatac |
38796849 |
T |
|
| Q |
300 |
tctttagcttcttagcctcg-----aatgaagggatgttgtaatttttaaaatataaattataacaatttaatgaaaactccgaacaaataattttttag |
394 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38796848 |
tctttagctccttagcctcgaatataatgaagggatgttgtaatttttaaaatataaattataacaatttaatgaaaactccaaacaaataattttttag |
38796749 |
T |
|
| Q |
395 |
ataaagaatttgatttcttttttcgaaaggaatctataacatatgcgc |
442 |
Q |
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| T |
38796748 |
ataaagaatttgatttcttttttcaaaaggaatctataacatatgcgc |
38796701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 31660941 - 31660984
Alignment:
| Q |
98 |
acattgcttgaaaatcgagtttaagagtagtttataaacaacac |
141 |
Q |
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||||||||||||||| ||| ||||||||||||||| |||||||| |
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| T |
31660941 |
acattgcttgaaaattgagattaagagtagtttattaacaacac |
31660984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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