View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3795_low_6 (Length: 425)
Name: NF3795_low_6
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 44376920 - 44377338
Alignment:
| Q |
1 |
ttaaatggcatgagtaatccaaaaaatttatctgcaagacnnnnnnnnnnnnnngggagactctaccaaggcattcatagcaccagcttttttgtggtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44376920 |
ttaaatggcatgagtaatccaaaaaatttatctgcaagacagagagag------gggagactctaccaaggcattcatagcaccagcttttttgtggtgt |
44377013 |
T |
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| Q |
101 |
tcgaatccaggtcttttttcacgagacacataaacaagacgaggtaactcgttcccatcaatatcacgaacaccattttgtccaaggaaaacctgcacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44377014 |
tcgaatccaggtcttttttcacgagacacataaacaagacgaggtaactcgttcccatcaatatcgcgaacaccattttgtccaaggaaaacctgcacaa |
44377113 |
T |
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| Q |
201 |
gtacatcatacttgaactttttccnnnnnnncacagccaatttggattgaagtagtatcatataacgctactcacctgaatcattccaggatgatcgttg |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44377114 |
gtacatcatacttgaactttttccaaaaaaacacagccaatttggattgaagtagtatcatataacgctactcacctgaatcattccaggatgatcgttg |
44377213 |
T |
|
| Q |
301 |
acattgtttccaggccaaggtgtcccatcttgcattgtccatccatcctcaggaaccttttgcgccattgcaaccaatgcattaatcctcacttttaact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44377214 |
acattgtttccaggccaaggtgtcccatcttgcattgtccatccatcctcaggaaccttttgcgccattgcaaccaatgcattaatcctcacttttaact |
44377313 |
T |
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| Q |
401 |
cttcatagtccctctgtaccaacaa |
425 |
Q |
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| T |
44377314 |
cttcatagtccctctgtaccaacaa |
44377338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 423
Target Start/End: Original strand, 38720620 - 38720769
Alignment:
| Q |
274 |
acctgaatcattccaggatgatcgttgacattgtttccaggccaaggtgtcccatcttgcattgtccatccatcctcaggaaccttttgcgccattgcaa |
373 |
Q |
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||||||||||| ||||||||||| | |||| ||||||||||| || |||||||| ||||| |||||||||||||| |||||||| || ||| |||| | |
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| T |
38720620 |
acctgaatcatgccaggatgatccctcacatcatttccaggccacggagtcccatcctgcatagtccatccatcctcgggaaccttctgtgccgttgcca |
38720719 |
T |
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| Q |
374 |
ccaatgcattaatcctcacttttaactcttcatagtccctctgtaccaac |
423 |
Q |
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|||| |||||||||||| || || |||||||| || ||||||| |||| |
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| T |
38720720 |
ccaaactattaatcctcaccttaaattcttcataatctctctgtaacaac |
38720769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 195
Target Start/End: Original strand, 38720291 - 38720413
Alignment:
| Q |
73 |
attcatagcaccagcttttttgtggtgttcgaatccaggtcttttttcacgagacacataaacaagacgaggtaactcgttcccatcaatatcacgaaca |
172 |
Q |
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|||||| || ||||| ||||||||||| || || ||||| |||||||| | ||| |||||||| | ||||||||||| || || |||| |||||||||| |
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| T |
38720291 |
attcatggctccagcctttttgtggtgatcaaacccaggccttttttctctagaaacataaactaagcgaggtaactcatttccctcaacatcacgaaca |
38720390 |
T |
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| Q |
173 |
ccattttgtccaaggaaaacctg |
195 |
Q |
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|||| || |||||||| ||||| |
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| T |
38720391 |
ccatcatgaccaaggaagacctg |
38720413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 13825890 - 13825952
Alignment:
| Q |
274 |
acctgaatcattccaggatgatcgttgacattgtttccaggccaaggtgtcccatcttgcatt |
336 |
Q |
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| T |
13825890 |
acctggatcattcccggatggtctctgacattatttccaggccacggtgtaccatcttgcatt |
13825952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 49591795 - 49591871
Alignment:
| Q |
274 |
acctgaatcattccaggatgatcgttgacattgtttccaggccaaggtgtcccatcttgcattgtccatccatcctc |
350 |
Q |
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| T |
49591795 |
acctgaatcattccaggatgatccctgggattatttccaggccaaggagttccatcctgcattgtccaaccttcctc |
49591871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 49591586 - 49591659
Alignment:
| Q |
65 |
accaaggcattcatagcaccagcttttttgtggtgttcgaatccaggtcttttttcacgagacacataaacaag |
138 |
Q |
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| T |
49591586 |
accaaagcattcatagctccagccttcttgtgatgttggaagcctggtcgcttttcacgagacacataaacaag |
49591659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 54383180 - 54383264
Alignment:
| Q |
60 |
actctaccaaggcattcatagcaccagcttttttgtggtgttcgaatccaggtcttttttcacgagacacataaacaagacgagg |
144 |
Q |
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| T |
54383180 |
actctaccagagcattcatggcaccggctttcttgtggtgttgaaatcctggccttttctctctagatacataaacaaggcgagg |
54383264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 416
Target Start/End: Original strand, 54383314 - 54383453
Alignment:
| Q |
277 |
tgaatcattccaggatgatcgttgacattgtttccaggccaaggtgtcccatcttgcattgtccatccatcct-caggaaccttttgcgccattgcaacc |
375 |
Q |
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|||||||| ||||||||||| || ||||||||| ||||| ||||||||||| ||||| |||| || |||| |||||||||| || || |||| || |
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| T |
54383314 |
tgaatcataccaggatgatccttagtattgtttcctggccatggtgtcccatcctgcataatcca-ccctcctgcaggaaccttctgagcttttgccaca |
54383412 |
T |
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| Q |
376 |
aatgcattaatcctcacttttaactcttcatagtccctctg |
416 |
Q |
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| T |
54383413 |
agtgcattgatcctaaccttaaactcttcatattctctctg |
54383453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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