View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3795_low_8 (Length: 403)

Name: NF3795_low_8
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3795_low_8
NF3795_low_8
[»] chr8 (3 HSPs)
chr8 (23-267)||(17506905-17507149)
chr8 (28-269)||(10644049-10644290)
chr8 (28-167)||(32711773-32711913)
[»] chr6 (1 HSPs)
chr6 (23-264)||(21506017-21506258)
[»] chr1 (4 HSPs)
chr1 (20-266)||(21529750-21529995)
chr1 (4-269)||(22907982-22908247)
chr1 (46-269)||(44307107-44307331)
chr1 (46-255)||(46883416-46883627)
[»] scaffold0697 (1 HSPs)
scaffold0697 (20-266)||(707-951)
[»] chr3 (4 HSPs)
chr3 (21-222)||(27426778-27426979)
chr3 (269-397)||(34372975-34373103)
chr3 (30-269)||(34785460-34785698)
chr3 (31-220)||(15761280-15761469)
[»] chr2 (6 HSPs)
chr2 (18-268)||(26666901-26667150)
chr2 (56-268)||(6051808-6052019)
chr2 (294-403)||(10533012-10533118)
chr2 (294-368)||(10526227-10526298)
chr2 (294-368)||(10524808-10524879)
chr2 (294-326)||(10531154-10531186)
[»] chr5 (4 HSPs)
chr5 (20-269)||(5665688-5665937)
chr5 (32-110)||(33319703-33319781)
chr5 (207-268)||(21635661-21635722)
chr5 (207-268)||(21643908-21643969)
[»] chr7 (1 HSPs)
chr7 (20-268)||(13323816-13324064)
[»] chr4 (1 HSPs)
chr4 (46-167)||(13892718-13892839)
[»] scaffold1215 (1 HSPs)
scaffold1215 (294-368)||(219-290)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 23 - 267
Target Start/End: Complemental strand, 17507149 - 17506905
Alignment:
Q  23 ttagatttatggtttatacaacgggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttccctgga 122  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  17507149 ttagatttatggtttatacaacgggggcatttgcgtaattataatgttcattcccaggattctacatcggaaaccaaacctattttacttgttccgtgga 17507050  T
Q  123 attattttnnnnnnngttcccaggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccagggaaag 222  Q
    ||||||||       ||||||||||||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||    
T  17507049 attattttaaaaaaagttcccaggaattaaacaattaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctgggaaag 17506950  T
Q  223 ttgatacccgggaatagattttgtaaccctcaaacaaacgccccc 267  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  17506949 ttgatacctgggaatagattttgtaaccctcaaacaaacgccccc 17506905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 28 - 269
Target Start/End: Original strand, 10644049 - 10644290
Alignment:
Q  28 tttatggtttatacaacgggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttccctggaattat 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10644049 tttatggtttatacaacgggggcatttgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacctattttacttgttccctggaattat 10644148  T
Q  128 tttnnnnnnngttcccaggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccagggaaagttgat 227  Q
    |||       |||||||| |||| ||||||||||||||||       ||||||||| |||||||||||||||||||||||| ||||| || |||||||||    
T  10644149 tttaaaaaaagttcccagaaattaaacaattaaccaaacacttttttctatattttcctgggaataaaattttaaccttcatattcctggaaaagttgat 10644248  T
Q  228 acccgggaatagattttgtaaccctcaaacaaacgccccctt 269  Q
    ||| ||||||||||||||||||||||||||||||||||||||    
T  10644249 acctgggaatagattttgtaaccctcaaacaaacgccccctt 10644290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 28 - 167
Target Start/End: Complemental strand, 32711913 - 32711773
Alignment:
Q  28 tttatggtttatacaa-cgggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttccctggaatta 126  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  32711913 tttatggtttatacaaacaggggcatttgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacctattttactcgttccctggaatta 32711814  T
Q  127 ttttnnnnnnngttcccaggaattcaacaattaaccaaaca 167  Q
    ||||       ||||||||||||| ||||||||||||||||    
T  32711813 ttttaaaaaaagttcccaggaattaaacaattaaccaaaca 32711773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 21506017 - 21506258
Alignment:
Q  23 ttagatttatggtttatacaacgggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttccctgga 122  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  21506017 ttagatttatggtttatacaactggggcatttgtgtaattataatgttcattcccaggattctacatcgcaaaccaaacgtattttacttgttccctgga 21506116  T
Q  123 attattttnnnnnnngttcccaggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccagggaaag 222  Q
    ||||||||       ||||||||||||||||||||||||||||||       ||||||||| || ||||||||||||||||||||||||||| || ||||    
T  21506117 attattttaaaaaaagttcccaggaattcaacaattaaccaaacacttttttctatattttcctaggaataaaattttaaccttcacattcctggaaaag 21506216  T
Q  223 ttgatacccgggaatagattttgtaaccctcaaacaaacgcc 264  Q
    |||||||| |||||| ||||||||||||||||||||||||||    
T  21506217 ttgatacctgggaatcgattttgtaaccctcaaacaaacgcc 21506258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 9e-86; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 21529995 - 21529750
Alignment:
Q  20 acgttagatttatggtttatacaacgggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttccct 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||||||||    
T  21529995 acgttagatttatggtttatacaacgggg-catttgtgtaattataatgttcattcccaggattctacattgcaaaccaaatgtattttacttgttccct 21529897  T
Q  120 ggaattattttnnnnnnngttcccaggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccaggga 219  Q
    | |||||||||       ||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||    
T  21529896 gtaattattttaaaaaaagttcccacgaattcaacaattaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctggga 21529797  T
Q  220 aagttgatacccgggaatagattttgtaaccctcaaacaaacgcccc 266  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||    
T  21529796 aagttgatacctgagaatagattttgtaaccctcaaacaaacgcccc 21529750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 4 - 269
Target Start/End: Original strand, 22907982 - 22908247
Alignment:
Q  4 gaaggagcacagatagacgttagatttatggtttatacaacgggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacat 103  Q
    |||||| ||| |||| | ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||| ||||||||||| |    
T  22907982 gaaggatcactgatacaggttagatttatggtttatacaacgggggcatttttgtaattataatggtcattcccaggattttacattgcaaaccaaacct 22908081  T
Q  104 attttacttgttccctggaattattttnnnnnnngttcccaggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaac 203  Q
    | |||||||||||||||||||||||||       ||||||||||||| ||||||||| ||||||       ||||||||| |||||||||||||||||||    
T  22908082 actttacttgttccctggaattattttaaaaaaagttcccaggaattaaacaattaatcaaacacttttttctatattttcctgggaataaaattttaac 22908181  T
Q  204 cttcacattccagggaaagttgatacccgggaatagattttgtaaccctcaaacaaacgccccctt 269  Q
    |||||||||||  |||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  22908182 cttcacattcctaggaaagttgatacctgggaataaattttgtaaccctcaaacaaacgccccctt 22908247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 46 - 269
Target Start/End: Original strand, 44307107 - 44307331
Alignment:
Q  46 ggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttccctggaattattttnnnnnnngttcccag 145  Q
    |||| |||| |||||||||||||||||||  || ||||||||||| |||||||| ||||||| |||| |||| ||||||||||||       ||||||||    
T  44307107 ggggtatttatgtaattataatgttcattctcatgattctacatctcaaaccaaccatatttcacttattccttggaattattttaaaaaaagttcccag 44307206  T
Q  146 gaattcaacaattaaccaaaca-nnnnnnnctatatttttctgggaataaaattttaaccttcacattccagggaaagttgatacccgggaatagatttt 244  Q
    ||||| ||||||||||||||||         |||||||||||||||||| || ||| ||||||||||||| ||||||||| || |  |||||||  ||||    
T  44307207 gaattaaacaattaaccaaacactttttttttatatttttctgggaatacaagtttcaccttcacattcctgggaaagttaattcatgggaataagtttt 44307306  T
Q  245 gtaaccctcaaacaaacgccccctt 269  Q
    | ||||||||||||||| |||||||    
T  44307307 gaaaccctcaaacaaacaccccctt 44307331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 46 - 255
Target Start/End: Complemental strand, 46883627 - 46883416
Alignment:
Q  46 ggggcatttgtgtaattataatgttcatttccaggattct---acatcgcaaaccaaacatattttacttgttccctggaattattttnnnnnnngttcc 142  Q
    |||| |||| ||||||||||||||||||| ||||||||||   || || |||||||||||||||| |||| |||| ||||||||||||       ||||     
T  46883627 ggggtatttatgtaattataatgttcattcccaggattcttctacctctcaaaccaaacatatttcacttattccttggaattattttaaaaaaagttcg 46883528  T
Q  143 caggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccagggaaagttgatacccgggaatagatt 242  Q
    |||||||| ||||| ||||||||||       ||||||||||||||||||| |||||| ||||||| ||| | || |||||| ||||| |||||||  ||    
T  46883527 caggaattaaacaactaaccaaacacttttttctatatttttctgggaatacaattttcaccttcatatt-ctggaaaagttaatacctgggaataagtt 46883429  T
Q  243 ttgtaaccctcaa 255  Q
    |||||||||||||    
T  46883428 ttgtaaccctcaa 46883416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 951 - 707
Alignment:
Q  20 acgttagatttatggtttatacaacgggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttccct 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||||||||    
T  951 acgttagatttatggtttatacaacgggg-catttgtgtaattataatgttcattcccaggattctacattgcaaaccaaatgtattttacttgttccct 853  T
Q  120 ggaattattttnnnnnnngttcccaggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccaggga 219  Q
    | |||||||||       ||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||    
T  852 gtaattattttaaaaaaagttcccacgaattcaacaattaaccaaaca-ctttttctatatttttctgggaataaaattttaaccttcacattcctggga 754  T
Q  220 aagttgatacccgggaatagattttgtaaccctcaaacaaacgcccc 266  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||    
T  753 aagttgatacctgagaatagattttgtaaccctcaaacaaacgcccc 707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 27426778 - 27426979
Alignment:
Q  21 cgttagatttatggtttatacaacgggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttccctg 120  Q
    |||||| |||||||||||||||| ||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||| |||||||| |||||||||    
T  27426778 cgttagttttatggtttatacaatgggggcacttgtgtaattacagtgttcattcccaggattctacatcacaaaccaaacgtattttacctgttccctg 27426877  T
Q  121 gaattattttnnnnnnngttcccaggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccagggaa 220  Q
    ||||||||||       ||||||||||||| ||||||||||||||||       ||||||||| || |||||||||||||||||||||||||||||||||    
T  27426878 gaattattttcaaaaaagttcccaggaattaaacaattaaccaaacacttttttctatattttcctcggaataaaattttaaccttcacattccagggaa 27426977  T
Q  221 ag 222  Q
    ||    
T  27426978 ag 27426979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 269 - 397
Target Start/End: Original strand, 34372975 - 34373103
Alignment:
Q  269 tgagagtttattctgtggcagattatcatgatgagacattacatataagaaacaagacagttattatattgccgctttttggatttttatatctctaata 368  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34372975 tgagagtttattctgtggcagattatcatgatgagagattaaatataagaaacaagacagttattatattgccgctttttggatttttatatctctaata 34373074  T
Q  369 nnnnnnnctgttttaaggttactttaaaa 397  Q
           | ||||||||||||||||||||    
T  34373075 tttttttccgttttaaggttactttaaaa 34373103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 34785698 - 34785460
Alignment:
Q  30 tatggtttatacaacgggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttccctggaattattt 129  Q
    |||||||||||||| ||||||||||||||||||||||| |  ||| | ||| |||||||||||||||||||||||||||||||||  |||||||||||||    
T  34785698 tatggtttatacaatgggggcatttgtgtaattataatatcgattactaggtttctacatcgcaaaccaaacatattttacttgtaacctggaattattt 34785599  T
Q  130 tnnnnnnngttcccaggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccagggaaagttgatac 229  Q
    |       ||| ||||||||| |||||||||||||| |       ||| || || ||||||| |||| ||||||||| | ||||| ||| ||||| | ||    
T  34785598 ttaaaaaagttaccaggaattaaacaattaaccaaaaacttttttctagatgttcctgggaa-aaaaatttaacctttaaattcctggggaagttaaaac 34785500  T
Q  230 ccgggaatagattttgtaaccctcaaacaaacgccccctt 269  Q
    |  |||||| ||| ||||||||||||||||||| ||||||    
T  34785499 ctaggaataaattatgtaaccctcaaacaaacgtcccctt 34785460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 15761469 - 15761280
Alignment:
Q  31 atggtttatacaacgggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttccctgg-aattattt 129  Q
    |||||||||||||  ||||||||| |||||||| |||||| |||   ||||||||||||| ||||| ||||||||||||||| |||  ||| ||||||||    
T  15761469 atggtttatacaataggggcatttatgtaattacaatgtttattcttaggattctacatctcaaactaaacatattttacttattctttggaaattattt 15761370  T
Q  130 tnnnnnnngttcccaggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccagggaa 220  Q
    |        ||||||| |||| |||||||||||||||        ||| |||||||||||||||||| ||| ||||||| ||||| |||||    
T  15761369 taaaaaaa-ttcccagaaattaaacaattaaccaaacgcttttttctacatttttctgggaataaaactttcaccttcatattcctgggaa 15761280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 26666901 - 26667150
Alignment:
Q  18 agacgttagatttatggtttatacaacgggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttcc 117  Q
    ||||||| | || ||||||||| |||  |||  |||| ||| |||||||  || ||| ||||||||||||||| ||| ||||||||||||||  | ||||    
T  26666901 agacgttggtttcatggtttattcaatagggatatttatgtgattataacatttattcccaggattctacatctcaagccaaacatattttatctattcc 26667000  T
Q  118 ctggaattattttnnnnnnngttcccaggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccagg 217  Q
     ||||||||||||        |||| ||||||| ||||||||||||||||       ||||||||| |||||||||||||||| ||||||||||||| ||    
T  26667001 ttggaattattttaaaacaa-ttcctaggaattaaacaattaaccaaacacctttttctatattttcctgggaataaaattttcaccttcacattcctgg 26667099  T
Q  218 gaaagttgatacccgggaatagattttgtaaccctcaaacaaacgccccct 268  Q
    |||| |  |||||  |||||| |||||||||||||||||||||||||||||    
T  26667100 gaaaatgaatacctaggaataaattttgtaaccctcaaacaaacgccccct 26667150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 268
Target Start/End: Original strand, 6051808 - 6052019
Alignment:
Q  56 tgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttccctggaattattttnnnnnnngttcccaggaattcaaca 155  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||| |||| ||||||||||||       |||||| |||||| ||||    
T  6051808 tgtaattataatgttcattcccaggattctacatctcaaaccaaccatatttcacttattccttggaattatttt-aaaaaagttccctggaattaaaca 6051906  T
Q  156 attaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccagggaaagttgatacccgggaatagattttgtaaccctcaa 255  Q
    ||||||||||||        |||||||| || |||||| || ||| ||||||||||||  ||||||||| || ||  ||||||  ||||| |||||||||    
T  6051907 attaaccaaacactttcttttatattttcctaggaatacaagttttaccttcacattcgtgggaaagttaattccttggaataagttttgaaaccctcaa 6052006  T
Q  256 acaaacgccccct 268  Q
    |||||| ||||||    
T  6052007 acaaacaccccct 6052019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 403
Target Start/End: Complemental strand, 10533118 - 10533012
Alignment:
Q  294 tcatgatgagacattacatataagaaacaagacagttattatattgccgctttttggatttttatatctctaatannnnnnnctgttttaaggttacttt 393  Q
    ||||||||||||||||||||||||||||||||||   |||||||| |||||||| |||||||||| |||||||||       | ||||||||||| ||||    
T  10533118 tcatgatgagacattacatataagaaacaagaca---attatattcccgcttttcggatttttatttctctaatatttttttccgttttaaggttgcttt 10533022  T
Q  394 aaaagatacg 403  Q
    ||||||||||    
T  10533021 aaaagatacg 10533012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 10526298 - 10526227
Alignment:
Q  294 tcatgatgagacattacatataagaaacaagacagttattatattgccgctttttggatttttatatctctaata 368  Q
    ||||||||||||||||||||||||||||||||||   |||||||| ||| |||| |||||||||| |||| ||||    
T  10526298 tcatgatgagacattacatataagaaacaagaca---attatattcccgtttttcggatttttatttctcaaata 10526227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 10524879 - 10524808
Alignment:
Q  294 tcatgatgagacattacatataagaaacaagacagttattatattgccgctttttggatttttatatctctaata 368  Q
    |||||||||||||||||||||| |||||||||| |||||   ||| |  || ||||||||||||| |||||||||    
T  10524879 tcatgatgagacattacatatatgaaacaagacggttat---attcctactctttggatttttatttctctaata 10524808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 10531186 - 10531154
Alignment:
Q  294 tcatgatgagacattacatataagaaacaagac 326  Q
    |||||||||||||||||||||||||||||||||    
T  10531186 tcatgatgagacattacatataagaaacaagac 10531154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 5665937 - 5665688
Alignment:
Q  20 acgttagatttatggtttatacaacgggggcatttgtgtaattataatgttcatttccaggatt-ctacatcgcaaaccaaacatattttacttgttccc 118  Q
    ||||||||||||||||||||| ||   |||||||||||||||||||||||| ||| | ||| || |||| | |||  |||||||||||||   | ||||     
T  5665937 acgttagatttatggtttatataataagggcatttgtgtaattataatgtttattccaaggttttctaccttgcag-ccaaacatattttttctattcct 5665839  T
Q  119 tggaattattttnnnnnnngttcccaggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccaggg 218  Q
    ||||||||||||       |||||||||||||  |||||||||||||||       || |||||| |||||||||||| |||  |||| ||||||| |||    
T  5665838 tggaattattttaaaagaagttcccaggaattacacaattaaccaaacacttttttctgtattttcctgggaataaaaatttcccctttacattcctggg 5665739  T
Q  219 aaagttgatacccgggaatagattttgtaaccctcaaacaaacgccccctt 269  Q
     ||||| || || ||||||| ||||||||||||||||| |||| |||||||    
T  5665738 taagttaattcctgggaataaattttgtaaccctcaaaaaaacaccccctt 5665688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 33319781 - 33319703
Alignment:
Q  32 tggtttatacaacgggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttac 110  Q
    ||||||||||||  |||| ||||||||| ||||||||||||||  ||||||||||||| |||| |||||||||||||||    
T  33319781 tggtttatacaataggggtatttgtgtacttataatgttcattcgcaggattctacattgcaagccaaacatattttac 33319703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 21635722 - 21635661
Alignment:
Q  207 cacattccagggaaagttgatacccgggaatagattttgtaaccctcaaacaaacgccccct 268  Q
    |||||||| | |||||||||||||   ||||| |||||||||||||||||||||| ||||||    
T  21635722 cacattcctgagaaagttgataccgaagaataaattttgtaaccctcaaacaaacaccccct 21635661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 21643969 - 21643908
Alignment:
Q  207 cacattccagggaaagttgatacccgggaatagattttgtaaccctcaaacaaacgccccct 268  Q
    |||||||| | |||||||||||||   ||||| |||||||||||||||||||||| ||||||    
T  21643969 cacattcctgagaaagttgataccgaagaataaattttgtaaccctcaaacaaacaccccct 21643908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 13324064 - 13323816
Alignment:
Q  20 acgttagatttatggtttatacaacgggggcatttgtgtaattataatgttcatttccaggatt-ctacatcgcaaaccaaacatattttacttgttccc 118  Q
    ||||| ||||||||||||||| ||   |||||||||||||||||||||||| ||| | ||| || |||| | |||  |||||||||||||   | ||||     
T  13324064 acgttggatttatggtttatataataagggcatttgtgtaattataatgtttattcctaggttttctaccttgcag-ccaaacatattttttctattcct 13323966  T
Q  119 tggaattattttnnnnnnngttcccaggaattcaacaattaaccaaacannnnnnnctatatttttctgggaataaaattttaaccttcacattccaggg 218  Q
    ||||||||||||       ||||||||||||| ||||||||||||||||       || |||||| || ||||||||| |||  |||| ||||||| |||    
T  13323965 tggaattattttaaaagaagttcccaggaattaaacaattaaccaaacacttttttctgtattttcctaggaataaaaatttcccctttacattcctggg 13323866  T
Q  219 aaagttgatacccgggaatagattttgtaaccctcaaacaaacgccccct 268  Q
     ||||| || || ||||||| |||||||||||||||||||||| ||||||    
T  13323865 taagttaattcctgggaataaattttgtaaccctcaaacaaacaccccct 13323816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 13892839 - 13892718
Alignment:
Q  46 ggggcatttgtgtaattataatgttcatttccaggattctacatcgcaaaccaaacatattttacttgttccctggaattattttnnnnnnngttcccag 145  Q
    |||| |||| ||||||||||||||||||| | ||||||||||||| |||||||| ||||||| |||| |||| ||||||||||||       ||| ||||    
T  13892839 ggggtatttatgtaattataatgttcattcctaggattctacatctcaaaccaaccatatttcacttattccttggaattattttaaaaaaagtttccag 13892740  T
Q  146 gaattcaacaattaaccaaaca 167  Q
    ||||| ||||||||||||||||    
T  13892739 gaattaaacaattaaccaaaca 13892718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 290 - 219
Alignment:
Q  294 tcatgatgagacattacatataagaaacaagacagttattatattgccgctttttggatttttatatctctaata 368  Q
    ||||||||||||||||||||||||||||||||||   |||||||| ||| |||| |||||||||| |||| ||||    
T  290 tcatgatgagacattacatataagaaacaagaca---attatattcccgtttttcggatttttatttctcaaata 219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University