View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3795_low_9 (Length: 399)
Name: NF3795_low_9
Description: NF3795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3795_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 230 - 387
Target Start/End: Complemental strand, 5567811 - 5567654
Alignment:
| Q |
230 |
aacacacatgcttttctctctcctcaaaattgtcacttttccccctttttgtcagtcaaccgttagattaatctagcggctcaaaattgcgcagggaggg |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5567811 |
aacacacatgcttttctctctcctcaaaattgtcacttttccccccttttgtcagtcaaccgctagattaatctagcggctcaaaattgcgcagggaggg |
5567712 |
T |
|
| Q |
330 |
agtagtaaaaagctggaggggacccgtttcccatttgtaagagtattttatatatatt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5567711 |
agtagtaaaaagctggaggggacccgtttcccatttgtaagagtattttatatatatt |
5567654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 5568021 - 5567906
Alignment:
| Q |
20 |
gtttccagattttgtaggaatgaagattgattccaattatttatatttcaagtgactgaaattacaacattgtattgtaaaattgctattcttgttgaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568021 |
gtttccagattttgtaggaatgaagattgattccaattatttatatttcaagtgactgaaattacaacattgtattgtaaaattgctattcttgttgaca |
5567922 |
T |
|
| Q |
120 |
ttggtgaagacatttc |
135 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5567921 |
ttggtgaagacatttc |
5567906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 36118887 - 36118997
Alignment:
| Q |
20 |
gtttccagattttgtaggaatgaagattgattccaattatttatatttcaagtgactgaaattacaacattgtattgtaaaattgctattcttgttgaca |
119 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
36118887 |
gtttccaaattttgtaagaatgaagattgattctagata-gtatatttcaagtgactggaattacaacattgtattgtaaaattacaattcttgttgaca |
36118985 |
T |
|
| Q |
120 |
ttggtgaagaca |
131 |
Q |
| |
|
||||||||||| |
|
|
| T |
36118986 |
atggtgaagaca |
36118997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University