View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3796_high_11 (Length: 327)
Name: NF3796_high_11
Description: NF3796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3796_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 6 - 325
Target Start/End: Original strand, 37373526 - 37373852
Alignment:
| Q |
6 |
agaagcaaaggaattggaaagttctgcttgtatatatatcccatgaaaaataacattcttatatattaatgtttttgattaagttgacacaagtagaatt |
105 |
Q |
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| T |
37373526 |
agaagcaaaggaattggaaagttctgcttgtatatatatcccaggaaaaataacattcttatatattaatgtttttgattaagttgacacaagtagaatt |
37373625 |
T |
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| Q |
106 |
taaggaccacnnnnnnngcaaacatttccatttaaattaaacagtacatgagctggatgct-------ggttatttgtttaagacattaaaaactagatt |
198 |
Q |
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| T |
37373626 |
taaggaccactttttttgcaaacatttccatttaaattaaacagtacatgagctggatgcttaccaatggttattagtttaagacattaaaaactagatt |
37373725 |
T |
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| Q |
199 |
gtattaggataagtagattttttattgaagttgaatatggcatgagatatagcaaatgaagtctccctctaggccaagtcatgcattctttcggaagttg |
298 |
Q |
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| T |
37373726 |
gtattaggataagtagattttttattgaagttgaatatggcatgagatatagcaaatgaagtctccctctaggccaagtcatacattctttcggaagttg |
37373825 |
T |
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| Q |
299 |
tatcattatataggtttatgctttacc |
325 |
Q |
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| T |
37373826 |
tatcattatataggtttatgctttacc |
37373852 |
T |
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