View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3796_high_14 (Length: 320)

Name: NF3796_high_14
Description: NF3796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3796_high_14
NF3796_high_14
[»] chr8 (4 HSPs)
chr8 (15-320)||(1424088-1424390)
chr8 (195-306)||(10711976-10712088)
chr8 (246-306)||(44420639-44420699)
chr8 (246-295)||(16985659-16985708)
[»] chr3 (5 HSPs)
chr3 (233-306)||(50056893-50056966)
chr3 (218-306)||(28095952-28096039)
chr3 (194-240)||(50057279-50057325)
chr3 (161-240)||(50057409-50057488)
chr3 (259-306)||(50061382-50061429)
[»] chr7 (2 HSPs)
chr7 (197-282)||(39364335-39364420)
chr7 (246-306)||(29443616-29443676)
[»] chr5 (1 HSPs)
chr5 (161-308)||(1678916-1679066)
[»] chr2 (3 HSPs)
chr2 (198-301)||(25476329-25476432)
chr2 (233-306)||(17508848-17508921)
chr2 (246-306)||(38500219-38500282)
[»] chr4 (2 HSPs)
chr4 (246-306)||(11393149-11393209)
chr4 (246-306)||(11402876-11402936)
[»] scaffold0245 (1 HSPs)
scaffold0245 (259-306)||(12452-12499)
[»] scaffold0118 (1 HSPs)
scaffold0118 (247-306)||(18936-18995)
[»] chr1 (1 HSPs)
chr1 (259-306)||(1286185-1286232)


Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 1424390 - 1424088
Alignment:
Q  15 gatgaacagtggcgtactacggaaagtgcactcggaatgaacagtacttgcgataaacagtttgcatggtgaatagtgttttctaatgaacagggctttt 114  Q
    |||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1424390 gatgaacagtggcgcactatggaaagtgcactcgaaatgaacagtacttgcgataaacagtgtgcatggtgaatagtgttttctaatgaacagggctttt 1424291  T
Q  115 aggatctcaaagagtccgcgatgaaggcaaaaacccacaataaagacgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaa 214  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||    
T  1424290 aggatctcaaagagtccgcgatgaacgcataaactcacaataaagacgaaaaaagcaaaagtaaccg-aaagactgcaactagggtttatgcggaaacaa 1424192  T
Q  215 gaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatatatataggga 314  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||    
T  1424191 gacctcccaagatcgggagctctgatgccacgtgaaaactaaacattatatttcagagacaaaaaatgtacaactactaatgtgtt--tatatataggga 1424094  T
Q  315 tccagc 320  Q
    ||||||    
T  1424093 tccagc 1424088  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 306
Target Start/End: Complemental strand, 10712088 - 10711976
Alignment:
Q  195 tagggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaa-aatgcacaactacta 293  Q
    ||||||||||||||||||||||| |||||||||   ||| |||||||||| ||||||||| || ||||||| |||||||||||| |||| | | | ||||    
T  10712088 tagggtttatgcggaaacaagactccccaagattgagagttctgatgccatgtgaaaactgaatattatatgtcagagataaaataatgtatatccacta 10711989  T
Q  294 atgtgtttatata 306  Q
    |||| ||||||||    
T  10711988 atgtatttatata 10711976  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 44420699 - 44420639
Alignment:
Q  246 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 306  Q
    ||||||||| || |||||||||||||||||||  ||  ||||| |||||||||||||||||    
T  44420699 gtgaaaactgaatattatatttcagagataaatgatatacaaccactaatgtgtttatata 44420639  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 16985659 - 16985708
Alignment:
Q  246 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaat 295  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||||||    
T  16985659 gtgaaaactgaatattatatttcagagataaataatgtacaaccactaat 16985708  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 50056966 - 50056893
Alignment:
Q  233 gctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 306  Q
    |||||||| ||| ||||||||| || ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  50056966 gctctgataccatgtgaaaactgaatattatatttcagagataaataatgtacaaccactaatgtgtttatata 50056893  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 28095952 - 28096039
Alignment:
Q  218 cccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaa-aatgcacaactactaatgtgtttatata 306  Q
    ||||||||||| |||||||  |||||| |||||||| ||| |||||||||||||||||||| |||  ||||| |||||||||||||||||    
T  28095952 cccccaagatcgggagctc--atgccatgtgaaaacaaaatattatatttcagagataaaataatttacaaccactaatgtgtttatata 28096039  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 50057325 - 50057279
Alignment:
Q  194 ctagggtttatgcggaaacaagaccccccaagatcaggagctctgat 240  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  50057325 ctagggtttatgcggaagcaacaccccccaagatcgggagctctgat 50057279  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 50057488 - 50057409
Alignment:
Q  161 cgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagaccccccaagatcaggagctctgat 240  Q
    ||||||||| ||||||||  |||| ||| ||  |||||||||||| |||| |||  |||||||||||| |||||||||||    
T  50057488 cgaaaaaagaaaaagtaaccgcaaagacggcggctagggtttatgtggaagcaacgccccccaagatcgggagctctgat 50057409  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 50061429 - 50061382
Alignment:
Q  259 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 306  Q
    ||||||||||||||||||| |||| | ||| |||||||||||||||||    
T  50061429 attatatttcagagataaataatgtagaacgactaatgtgtttatata 50061382  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 39364335 - 39364420
Alignment:
Q  197 gggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatg 282  Q
    |||||||||||||| |||| |||| |||||||||||||||||||  || ||||||||| ||  |||||||||| ||||||| ||||    
T  39364335 gggtttatgcggaagcaaggcccctcaagatcaggagctctgatatcatgtgaaaactgaatgttatatttcaaagataaataatg 39364420  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 29443616 - 29443676
Alignment:
Q  246 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 306  Q
    ||||||||| || |||||||||||  |||||| |||  ||||| |||||||||||||||||    
T  29443616 gtgaaaactgaatattatatttcactgataaataatatacaaccactaatgtgtttatata 29443676  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 1678916 - 1679066
Alignment:
Q  161 cgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacat 260  Q
    ||||||||||||||||||  |||| | | ||  ||| |||||||| |||| |||| ||||| |||||||  ||||  ||||||| ||||||||  |  ||    
T  1678916 cgaaaaaagcaaaagtaaacgcaaaggcggcggctaaggtttatgtggaagcaaggccccctaagatcaaaagcttcgatgccatgtgaaaacatactat 1679015  T
Q  261 tatatttcagagat---aaaaaatgcacaactactaatgtgtttatatata 308  Q
    ||||||||||||||   |||||||| ||||| |||||| ||||||||||||    
T  1679016 tatatttcagagataaaaaaaaatgtacaaccactaatatgtttatatata 1679066  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 301
Target Start/End: Original strand, 25476329 - 25476432
Alignment:
Q  198 ggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgt 297  Q
    ||||||||||||| |||| ||||    ||||  |||||||||||||| ||||||||| || ||||||||||| ||||||| |||  ||||| ||||||||    
T  25476329 ggtttatgcggaagcaaggcccctagtgatcgagagctctgatgccatgtgaaaactgaagattatatttcaaagataaataatttacaaccactaatgt 25476428  T
Q  298 gttt 301  Q
    ||||    
T  25476429 gttt 25476432  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 17508921 - 17508848
Alignment:
Q  233 gctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 306  Q
    |||||||| ||| ||||||| | || ||||||||||||| ||||| |||| ||||| |||||||||||||||||    
T  17508921 gctctgataccatgtgaaaattgaatattatatttcagaaataaataatgtacaaccactaatgtgtttatata 17508848  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 38500282 - 38500219
Alignment:
Q  246 gtgaaaactaaacattatatttcaga---gataaaaaatgcacaactactaatgtgtttatata 306  Q
    ||||||||| || |||||||||||||   |||||| |||| ||||| |||||||||||||||||    
T  38500282 gtgaaaactgaatattatatttcagacgagataaataatgtacaaccactaatgtgtttatata 38500219  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 11393209 - 11393149
Alignment:
Q  246 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 306  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  11393209 gtgaaaacttaatattatatttcagagataaataatgtacaaccactgatgtgtttatata 11393149  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 11402936 - 11402876
Alignment:
Q  246 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 306  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  11402936 gtgaaaacttaatattatatttcagagataaataatgtacaaccactgatgtgtttatata 11402876  T

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Target: scaffold0245 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 12452 - 12499
Alignment:
Q  259 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 306  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  12452 attatatttcagagataaataatgtacaaccactaatgtgtttatata 12499  T

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Target: scaffold0118 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 18995 - 18936
Alignment:
Q  247 tgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 306  Q
    ||||||||||| ||||||||| ||||||||| |||| ||||| | |||||||||||||||    
T  18995 tgaaaactaaatattatattttagagataaataatgtacaaccattaatgtgtttatata 18936  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 1286185 - 1286232
Alignment:
Q  259 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 306  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  1286185 attatatttcagagataaataatgtacaaccactaatgtgtttatata 1286232  T

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