View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3796_high_16 (Length: 309)
Name: NF3796_high_16
Description: NF3796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3796_high_16 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 66088 - 66189
Alignment:
| Q |
57 |
gagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatg |
156 |
Q |
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|||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
66088 |
gagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttgacacgatccctcaaactttcaatcccggtcaaatg |
66187 |
T |
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| Q |
157 |
tt |
158 |
Q |
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|| |
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| T |
66188 |
tt |
66189 |
T |
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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 27421275 - 27421174
Alignment:
| Q |
57 |
gagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatg |
156 |
Q |
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| T |
27421275 |
gagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttgacacgatccctcaaactttcaatcccggtcaaatg |
27421176 |
T |
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| Q |
157 |
tt |
158 |
Q |
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|| |
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| T |
27421175 |
tt |
27421174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 26652118 - 26652252
Alignment:
| Q |
43 |
aatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcg |
142 |
Q |
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| T |
26652118 |
aatgtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttgatgtgatccctcaaacttttg |
26652217 |
T |
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| Q |
143 |
atcccggtcaaatgtttgcagttccactcactgac |
177 |
Q |
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| T |
26652218 |
atctcagtcaaatgttcgcagttccgctcaatgac |
26652252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 26758086 - 26758220
Alignment:
| Q |
43 |
aatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcg |
142 |
Q |
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||||||||| || || |||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| | |
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| T |
26758086 |
aatgtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttgatgtgatccctcaaacttttg |
26758185 |
T |
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| Q |
143 |
atcccggtcaaatgtttgcagttccactcactgac |
177 |
Q |
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| T |
26758186 |
atctcagtcaaatgttcgcagttccgctcaatgac |
26758220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 31289814 - 31289885
Alignment:
| Q |
42 |
gaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggac |
113 |
Q |
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| T |
31289814 |
gaatgtgtttagtatgagacttttacgagatagacttcctaaccggctcgattgtgaggattccctatggac |
31289885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 31289890 - 31289927
Alignment:
| Q |
140 |
tcgatcccggtcaaatgtttgcagttccactcactgac |
177 |
Q |
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| T |
31289890 |
tcgatcccggtcaaatgtttgcagttccactcactgac |
31289927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 26632715 - 26632791
Alignment:
| Q |
100 |
gattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactga |
176 |
Q |
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| T |
26632715 |
gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactga |
26632791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 26738691 - 26738767
Alignment:
| Q |
100 |
gattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactga |
176 |
Q |
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| T |
26738691 |
gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactga |
26738767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 43075244 - 43075178
Alignment:
| Q |
231 |
tcagtggtccattccttcttccctttcacaccattttcactttcattctcttctgtacctctctgct |
297 |
Q |
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| T |
43075244 |
tcagtggtccattccttcttccctttcacaccattttcactttcattctcttctgtacctctctgct |
43075178 |
T |
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