View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3796_high_18 (Length: 308)
Name: NF3796_high_18
Description: NF3796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3796_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 37320767 - 37321061
Alignment:
| Q |
1 |
caaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaacccagcattgttggggatag |
100 |
Q |
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| T |
37320767 |
caaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaacccagcattgttggggatag |
37320866 |
T |
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| Q |
101 |
gcttttatagtaattagtggcagtggcaagggatattatggagacgaaagtaaggttcaaagaaatgagaattgtggaacatgatgagaattttgccatg |
200 |
Q |
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| T |
37320867 |
gcttttatagtaattagtggcagtggcaagggatattatggagacgaaagtaaggttcaaagaaatgagaattgtggaacatgatgagaattttgccatg |
37320966 |
T |
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| Q |
201 |
gttgatgtgaatgaactaagaatgctttatgttgttgttcttgttgaggatccgataatgaacttataagaatgctattactatgaaaaatgtctctg |
298 |
Q |
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| T |
37320967 |
gttgatgtgaatgaactaagaatgcttt---ttgttgttgttgttgaggatcggataatgaacttataagaatgctattactatgaaaaatgtctctg |
37321061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37317188 - 37317414
Alignment:
| Q |
1 |
caaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaacccagcattgttggggatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37317188 |
caaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaagtgaaggtgagtgaatttctcttcttgaaaacccaacattgttggggatag |
37317287 |
T |
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| Q |
101 |
gcttttatagtaattagtggcagtggcaagggatattatggagacgaaagtaaggttcaaagaaatgagaa---ttgtggaacatgatgagaattttgcc |
197 |
Q |
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| T |
37317288 |
gttttgatagtaattagtggcagtggcaagggatattatagagaggaaagtaaggttcaaagaaattagaagagttatggagaatgttgaggattttgcc |
37317387 |
T |
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| Q |
198 |
atggttgatgtgaatgaactaagaatg |
224 |
Q |
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| T |
37317388 |
atggttgatgcgaatgaacaaagaatg |
37317414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 37324749 - 37324968
Alignment:
| Q |
2 |
aaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaacccagcattgttggggatagg |
101 |
Q |
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|||||||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37324749 |
aaataccatgcttggttttggtcccgacacaatgtcatgaaagtaaaagtgaaggtgagtgaatttctcttcttgaaaacccagcattgttggagatagg |
37324848 |
T |
|
| Q |
102 |
cttttatagtaattagtggcagtggcaagggatattatggagacgaaagtaaggttcaaagaaatgagaa---ttgtggaacatgatgagaattttgcca |
198 |
Q |
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|||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||| || ||| ||| |||| ||||||||| |
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| T |
37324849 |
ctttgatagtaattagtggccgtggtaagggatattatggagaggaaagtaaggttcaaagaaattagaagagttatggggaatgttgaggattttgcca |
37324948 |
T |
|
| Q |
199 |
tggttgatgtgaatgaactaa |
219 |
Q |
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|||||| ||| |||||||||| |
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| T |
37324949 |
tggttg-tgttaatgaactaa |
37324968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 37306893 - 37306978
Alignment:
| Q |
51 |
tgaaggtgagtgaatttctcttcttgaaaacccagcattgttggggataggcttttatagtaattagtggcagtggcaagggatat |
136 |
Q |
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|||||||| ||||||||||||||||||||||||| || | ||| |||| |||||| |||||||| ||||| || || |||||||| |
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| T |
37306893 |
tgaaggtgggtgaatttctcttcttgaaaacccaacaaagctggagataagcttttgtagtaattggtggctgtagccagggatat |
37306978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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