View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3796_high_2 (Length: 447)
Name: NF3796_high_2
Description: NF3796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3796_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 13930957 - 13931410
Alignment:
| Q |
1 |
atagacagtagagatgacaaaacttattagcatgttcccctataaaaaatatccactactcaacctgcccctaaatatatctaatgcatactccatttat |
100 |
Q |
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| T |
13930957 |
atagatagtagagatgacaaaacttattagcatgttcccctataaaaaatatccactactcaacctgcccctaaatatatctaatgcatactccatttat |
13931056 |
T |
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| Q |
101 |
gacgttgccaagaaagaatcatttttgttaatagtaattgtttaaggagacggattagtcttttaagaacaatccatgcaaggtagctgtctaataacga |
200 |
Q |
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| T |
13931057 |
gacgttgccaagaaagaatcatttttgttaatagtaattgtttaaggagacggattagtcttttaagaacaatccatgcaaggtagctgtctaataacaa |
13931156 |
T |
|
| Q |
201 |
cattgataaaatgagacaggcggattttcaaagaataaatacattaattaatctaatattccatctactcctaggtaatagattaattaattctccacta |
300 |
Q |
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| T |
13931157 |
cattgataaaatgagacaggcggattttctaagaataaatacattaattaatctaatattccatccactcctagctaatagattaattaattctccacta |
13931256 |
T |
|
| Q |
301 |
gtcattgaaagaatcacttttgttaagta--------------------ttttacgaacaatccaagtaaagctagctgtagtcttatttcattgctttt |
380 |
Q |
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| T |
13931257 |
gtcattgaaagaatcacttttgttaagtatttaaggagactaataagtcttttacgaacaatccaagtaaagctagctgtagtcttatttcattgctttt |
13931356 |
T |
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| Q |
381 |
tgaataatatacatctgtcattattagtaactcaaaaattcaaagtggagaata |
434 |
Q |
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| T |
13931357 |
tgaataatatacatctgtcattattagtaactcaaaaattcaaagtggagaata |
13931410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 92 - 434
Target Start/End: Complemental strand, 4081532 - 4081183
Alignment:
| Q |
92 |
tccatttatgacgttgccaagaaagaatcatttttgttaatagtaattgtttaaggagacggattagtcttttaagaacaatccatgcaaggtagctgtc |
191 |
Q |
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| T |
4081532 |
tccatttataacgttgccaagaaagaatcatttttgttaatagtaattgtttaaggagacggattagtcttttatgaacaatccatgcaaggtagctgtc |
4081433 |
T |
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| Q |
192 |
taataacgacattgataaaatgagacaggcggattttcaaagaataaatacattaattaatctaatattccatctactcctaggtaatagattaattaat |
291 |
Q |
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| T |
4081432 |
taataacaacattgataaaatgagacaggcggattttctaagaataaatac-------------atcctccatctaatcctagctaatagattaattaat |
4081346 |
T |
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| Q |
292 |
tctccactagtcattgaaagaatcacttttgttaagta--------------------ttttacgaacaatccaagtaaagctagctgtagtcttatttc |
371 |
Q |
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| T |
4081345 |
tctccattagtcattgaaagaatcacttttgttaagtatttaaggagactaataagtcttttacgaacaatccaagtaaagctagctgtagtcttatttc |
4081246 |
T |
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| Q |
372 |
attgctttttgaataatatacatctgtcattattagtaactcaaaaattcaaagtggagaata |
434 |
Q |
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| T |
4081245 |
attgctttttgaataatatacatctgtcattattagtaactcaaaaattcaaagtggagaata |
4081183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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