View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3796_high_3 (Length: 414)
Name: NF3796_high_3
Description: NF3796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3796_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 116 - 413
Target Start/End: Complemental strand, 28101336 - 28101039
Alignment:
| Q |
116 |
caccacagactcgaataatacaaactgttgcaggagacggtagaaacaaactgcaggccaaaaaaccagattactctagagcaaaacagaaacacatcat |
215 |
Q |
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| T |
28101336 |
caccacagactcgaataatacaaacagttgcaggagacggcagaaacaaactgcaggcgaaccaaccagattactctagagcaaaacagaaacacaacat |
28101237 |
T |
|
| Q |
216 |
aggctagaagaacaaccaagcagcagcctccgtacctcacaattttgaaacatcgctaaaagccacatagaactactaccgagaatcaattaaggaatta |
315 |
Q |
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| T |
28101236 |
gggctagaagaacaaccaagcagcagcctccgtacctcacaattttgaaacatcgctaaaaaccacatagaactactaccgagaagcaattaaggaatta |
28101137 |
T |
|
| Q |
316 |
gaccatgacagaaacaaactcaacaaatcgcagcatcccaaagaactcaacccctcgccacattgaaaagtgagataaattagttgaccatacacctt |
413 |
Q |
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| T |
28101136 |
gaccatgacagaaacaaactcaacaaatcgcagcatcccaaagaactcaccccctcgccacattgaaaagtgagataaattagttgaccatacacctt |
28101039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 29 - 338
Target Start/End: Complemental strand, 28104185 - 28103872
Alignment:
| Q |
29 |
aaaacaaaattggcacaaccgtccaaaaggatttggagtgaccaggaaaataaaccaaggcagcaaaacgcaaaaagaaat-gagcag--caccacagac |
125 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |
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| T |
28104185 |
aaaacaaaactggcacaaccgtccaaaaggatttggagtgaccaggaaaataaaccaaggcagcaaaacgcaaaaagaaatacagcagaacaccactgac |
28104086 |
T |
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| Q |
126 |
tcgaataatacaaactgttgcaggagacggtagaaacaaactgcaggccaaaaaaccagattactctagagcaaaacagaaac-acatcataggctagaa |
224 |
Q |
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| T |
28104085 |
tcgaataacacaaactgatgcagcagatggaaaaaacaaactgcaggtgaaccaaccagatttctcaagagtaaaacataaacgtggacataggctagaa |
28103986 |
T |
|
| Q |
225 |
gaacaaccaagcagcagcctccgtacctcacaattttgaaacatcgctaaaagccacatagaactactaccgagaatcaattaaggaattagaccatgac |
324 |
Q |
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||| ||||||||| ||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | | || ||| || || |||| |
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| T |
28103985 |
gaataaccaagcatcagcctccgcacctcacaattctgaaacaatgctaaaatccacatagaactactaccgagaaccggtcaaagaagcagcccttgac |
28103886 |
T |
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| Q |
325 |
agaaacaaactcaa |
338 |
Q |
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|||||||||||||| |
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| T |
28103885 |
agaaacaaactcaa |
28103872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 259
Target Start/End: Complemental strand, 26641103 - 26640877
Alignment:
| Q |
33 |
caaaattggcacaaccgtccaaaaggatttggagtgaccaggaaaataaaccaaggcagcaaaacgcaaaaagaaatgagcag--caccacagactcgaa |
130 |
Q |
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||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||| |||||| || | ||| |||||| ||||| || |
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| T |
26641103 |
caaaactggcacaacagtccaaacggatttggagtgaccaggacaataaaccaaggcag---aacacaaaaataatgcaacagaacaccactgactcaaa |
26641007 |
T |
|
| Q |
131 |
taatacaaactgttgcaggagacggtagaaacaaactgcaggccaaaaaaccagattactctagagcaaaacagaaacac-atcataggctagaagaaca |
229 |
Q |
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|||||||||||| ||||| ||| || ||||||||||||||||| || ||||||||||||| |||| |||||| |||| | || |||||||||||||| |
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| T |
26641006 |
taatacaaactgatgcagcagatggaagaaacaaactgcaggcgaaccaaccagattactccagagaaaaacataaacgcggacacaggctagaagaaca |
26640907 |
T |
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| Q |
230 |
accaagcagcagcctccgtacctcacaatt |
259 |
Q |
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|||||||||||||||| || |||||||||| |
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| T |
26640906 |
accaagcagcagcctctgtgcctcacaatt |
26640877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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