View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3796_high_5 (Length: 369)
Name: NF3796_high_5
Description: NF3796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3796_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 26 - 361
Target Start/End: Original strand, 50372593 - 50372924
Alignment:
| Q |
26 |
ccaaattcctgcaaatataaccaatatcaactgagctaaggaagaaacagagcattcaaattgaattagaataaagaaaaatgataataatagaatagaa |
125 |
Q |
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| T |
50372593 |
ccaaattcctgcaaatataaccaatatcaactgagctaaggaagaaacagagcattcaaattgaattagaataa-gaaaaatgataataatagaatagaa |
50372691 |
T |
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| Q |
126 |
agcaggaactataacaagaggaaacaaattcatttgaccgtcccgttataaaatcctagtaatacagtctggctggttttcagaataaggttcaaatgtg |
225 |
Q |
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| T |
50372692 |
agcgggaactataacaagaggaaacaaattcatttgaccgtcccgttataaaatcctagtaatacagtctggctggttttcagaataaggttcaaatgtg |
50372791 |
T |
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| Q |
226 |
cttaaaattcaaatattattaaattagcctagtgcataaacgagaacaacttaagctattctcaataaaaatgttgcagaatgtaactttttaaaatgca |
325 |
Q |
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| T |
50372792 |
cttaaaattcaaa---tattaaattagcctagagcataaacgagaacaacttaagctattctcaataaaaatgttgcagaatgtaactttttaaaatgca |
50372888 |
T |
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| Q |
326 |
attgctacaagtaaatgtgtcaatgacctttgatac |
361 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
50372889 |
attgctacaagtaaatgtgtcaatgacctttgatac |
50372924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 34899975 - 34899947
Alignment:
| Q |
2 |
atctcaacttgaaagttgaaactaccaaa |
30 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaa |
34899947 |
T |
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