View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3796_low_2 (Length: 342)

Name: NF3796_low_2
Description: NF3796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3796_low_2
NF3796_low_2
[»] chr8 (4 HSPs)
chr8 (18-180)||(38608335-38608497)
chr8 (18-180)||(38793118-38793280)
chr8 (189-335)||(38613611-38613757)
chr8 (48-180)||(38121626-38121758)
[»] chr4 (1 HSPs)
chr4 (48-177)||(28731203-28731332)
[»] chr1 (2 HSPs)
chr1 (48-122)||(51801280-51801354)
chr1 (48-122)||(31529212-31529286)
[»] chr7 (1 HSPs)
chr7 (48-122)||(34875934-34876008)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 38608335 - 38608497
Alignment:
Q  18 tattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38608335 tattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattc 38608434  T
Q  118 gaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccgga 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38608435 gaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccgga 38608497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 38793118 - 38793280
Alignment:
Q  18 tattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38793118 tattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattc 38793217  T
Q  118 gaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccgga 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38793218 gaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccgga 38793280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 189 - 335
Target Start/End: Complemental strand, 38613757 - 38613611
Alignment:
Q  189 agaagcaaaattcagcagattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 288  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613757 agaagcaaaatcgagctgattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 38613658  T
Q  289 aaaattactcataattttgaaacctgggaccagagatgatgatgatg 335  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  38613657 aaaattactcataattttgaaagctgggaccagagaagatgatgatg 38613611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 38121758 - 38121626
Alignment:
Q  48 cttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagt 147  Q
    |||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||| |||||||||  |||||  ||| ||||| |||||||||||||    
T  38121758 cttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttccgagtcgattcatcagaacaacacttccggcagtgctccaaaagt 38121659  T
Q  148 tttcatcggaggcgttgagattgctcaaccgga 180  Q
     ||||||||||||||||||||| ||||||||||    
T  38121658 cttcatcggaggcgttgagattactcaaccgga 38121626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 48 - 177
Target Start/End: Complemental strand, 28731332 - 28731203
Alignment:
Q  48 cttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagt 147  Q
    |||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||| ||||||||| ||||||  ||| |||||||||||||||||||    
T  28731332 cttttggcaccaagatcgagactctcagtcccggccgttgcgtaactgtcacttccgagtcgattcatccgaacagcacttccggcggtgctccaaaagt 28731233  T
Q  148 tttcatcggaggcgttgagattgctcaacc 177  Q
     ||||||||||||||||||||| |||||||    
T  28731232 attcatcggaggcgttgagattactcaacc 28731203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 51801354 - 51801280
Alignment:
Q  48 cttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaaca 122  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||||||||||||||| ||||||    
T  51801354 cttttggcaccaagatcgagactctcagtcccggccgttgcgtaatcgtcacttccgattcgattcatccgaaca 51801280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 31529286 - 31529212
Alignment:
Q  48 cttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaaca 122  Q
    |||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||| ||||||||| ||||||    
T  31529286 cttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttccgagtcgattcatccgaaca 31529212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 34875934 - 34876008
Alignment:
Q  48 cttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaaca 122  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||| ||||||||| ||||||    
T  34875934 cttttggcaccaagatcgagactctcagtcccggccgttgcgtaaccatcacttccgagtcgattcatccgaaca 34876008  T

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