View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3796_low_3 (Length: 333)

Name: NF3796_low_3
Description: NF3796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3796_low_3
NF3796_low_3
[»] chr8 (15 HSPs)
chr8 (1-183)||(6311097-6311282)
chr8 (180-326)||(38613611-38613757)
chr8 (12-181)||(7290038-7290211)
chr8 (1-180)||(4760187-4760366)
chr8 (1-180)||(36979184-36979362)
chr8 (1-180)||(30655448-30655627)
chr8 (1-180)||(18870674-18870849)
chr8 (1-189)||(10689255-10689442)
chr8 (1-180)||(18853280-18853457)
chr8 (39-159)||(39784963-39785086)
chr8 (39-159)||(25328418-25328540)
chr8 (5-144)||(33037922-33038063)
chr8 (23-159)||(35745213-35745353)
chr8 (85-159)||(10684452-10684528)
chr8 (106-182)||(19752609-19752683)
[»] chr5 (22 HSPs)
chr5 (1-181)||(1457262-1457446)
chr5 (12-180)||(27444771-27444943)
chr5 (12-180)||(43592080-43592252)
chr5 (12-180)||(43598525-43598697)
chr5 (12-180)||(43604017-43604189)
chr5 (12-180)||(43609509-43609681)
chr5 (12-180)||(27449615-27449787)
chr5 (1-163)||(30631227-30631391)
chr5 (13-159)||(28807687-28807837)
chr5 (5-159)||(15044512-15044666)
chr5 (13-159)||(37556737-37556887)
chr5 (13-159)||(37561559-37561709)
chr5 (23-159)||(2785197-2785337)
chr5 (23-159)||(31401973-31402113)
chr5 (115-180)||(31180079-31180142)
chr5 (23-159)||(31397116-31397256)
chr5 (23-141)||(33791158-33791278)
chr5 (55-180)||(38191983-38192105)
chr5 (55-180)||(38219208-38219330)
chr5 (23-141)||(33768021-33768141)
chr5 (4-61)||(31180138-31180196)
chr5 (124-180)||(35387474-35387527)
[»] chr7 (17 HSPs)
chr7 (5-159)||(24024433-24024589)
chr7 (11-159)||(12396735-12396885)
chr7 (11-159)||(12406155-12406305)
chr7 (13-159)||(19992135-19992283)
chr7 (13-159)||(21812353-21812501)
chr7 (47-159)||(4866553-4866667)
chr7 (5-159)||(31109689-31109844)
chr7 (5-180)||(20357664-20357837)
chr7 (35-182)||(2057763-2057910)
chr7 (55-180)||(1533608-1533730)
chr7 (55-180)||(21645818-21645940)
chr7 (105-180)||(2479148-2479221)
chr7 (105-184)||(47263485-47263562)
chr7 (85-159)||(16879894-16879970)
chr7 (85-159)||(16884750-16884826)
chr7 (85-159)||(24261511-24261587)
chr7 (85-159)||(24266390-24266466)
[»] chr6 (15 HSPs)
chr6 (13-159)||(6438324-6438471)
chr6 (35-159)||(11856795-11856921)
chr6 (38-159)||(14737715-14737838)
chr6 (11-159)||(14742547-14742697)
chr6 (11-159)||(22010808-22010958)
chr6 (13-159)||(28155684-28155832)
chr6 (11-159)||(28184325-28184478)
chr6 (35-180)||(30125940-30126084)
chr6 (55-180)||(5674934-5675057)
chr6 (23-159)||(6005239-6005379)
chr6 (23-159)||(16838566-16838706)
chr6 (13-141)||(33330560-33330690)
chr6 (13-159)||(33336057-33336207)
chr6 (23-141)||(5343322-5343443)
chr6 (105-180)||(31936398-31936470)
[»] chr4 (11 HSPs)
chr4 (12-181)||(51520257-51520430)
chr4 (1-159)||(3813846-3814008)
chr4 (12-181)||(56146823-56146996)
chr4 (13-159)||(18855549-18855697)
chr4 (11-159)||(9224518-9224668)
chr4 (11-159)||(9229305-9229455)
chr4 (1-180)||(24741748-24741925)
chr4 (1-180)||(29760449-29760626)
chr4 (39-159)||(45347957-45348079)
chr4 (39-159)||(45357436-45357558)
chr4 (28-159)||(5732486-5732618)
[»] chr3 (15 HSPs)
chr3 (1-182)||(7167049-7167229)
chr3 (35-159)||(22173330-22173456)
chr3 (1-180)||(2671698-2671876)
chr3 (28-159)||(18656256-18656388)
chr3 (16-180)||(28503982-28504145)
chr3 (1-180)||(8739175-8739354)
chr3 (1-180)||(9091413-9091592)
chr3 (13-159)||(2677202-2677351)
chr3 (77-180)||(40372986-40373085)
chr3 (13-159)||(2673046-2673195)
chr3 (13-159)||(10207755-10207904)
chr3 (49-181)||(8477170-8477301)
chr3 (76-159)||(8512037-8512122)
chr3 (76-159)||(8516917-8517002)
chr3 (23-133)||(24967957-24968069)
[»] chr1 (10 HSPs)
chr1 (13-159)||(39445322-39445470)
chr1 (13-159)||(44023987-44024135)
chr1 (13-159)||(25445204-25445352)
chr1 (13-159)||(1055126-1055274)
chr1 (12-159)||(41398060-41398215)
chr1 (81-159)||(41386571-41386650)
chr1 (23-141)||(43988589-43988709)
chr1 (5-144)||(24787481-24787624)
chr1 (55-180)||(24202932-24203054)
chr1 (124-180)||(19359079-19359132)
[»] scaffold0464 (1 HSPs)
scaffold0464 (13-159)||(185-333)
[»] scaffold0135 (1 HSPs)
scaffold0135 (11-159)||(35173-35323)
[»] scaffold0355 (2 HSPs)
scaffold0355 (1-159)||(9742-9902)
scaffold0355 (11-159)||(1-143)
[»] chr2 (10 HSPs)
chr2 (11-159)||(44312735-44312885)
chr2 (1-182)||(11099039-11099219)
chr2 (5-159)||(32246607-32246764)
chr2 (1-180)||(14291295-14291473)
chr2 (1-180)||(9296513-9296691)
chr2 (39-159)||(39812127-39812250)
chr2 (23-159)||(19344243-19344382)
chr2 (23-159)||(19349101-19349240)
chr2 (55-180)||(25403443-25403565)
chr2 (55-180)||(25398305-25398427)
[»] scaffold0127 (1 HSPs)
scaffold0127 (81-159)||(34132-34211)
[»] scaffold0978 (1 HSPs)
scaffold0978 (4-181)||(351-528)
[»] scaffold0197 (2 HSPs)
scaffold0197 (23-159)||(19288-19428)
scaffold0197 (85-159)||(14497-14573)
[»] scaffold0028 (1 HSPs)
scaffold0028 (23-159)||(149079-149219)
[»] scaffold0259 (1 HSPs)
scaffold0259 (23-159)||(2374-2514)
[»] scaffold0479 (1 HSPs)
scaffold0479 (98-159)||(13171-13233)
[»] scaffold0188 (1 HSPs)
scaffold0188 (55-180)||(24208-24331)
[»] scaffold0087 (1 HSPs)
scaffold0087 (105-180)||(44174-44247)
[»] scaffold0009 (1 HSPs)
scaffold0009 (85-159)||(182152-182228)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 6311282 - 6311097
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccat 97  Q
    ||||||||||||||||||||||||||||| |||| ||||| ||||| ||||| |||||||||||||||||||| |||  |||||||||||||||||||||    
T  6311282 ttcctttcttgcttatcttgtttatgctttgttatctcttagtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggaaaccat 6311183  T
Q  98 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacagaa 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6311182 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggattcacaacagaa 6311097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 180 - 326
Target Start/End: Complemental strand, 38613757 - 38613611
Alignment:
Q  180 agaagcaaaattcagcagattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 279  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613757 agaagcaaaatcgagctgattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 38613658  T
Q  280 aaaattactcataattttgaaacctgggaccagagatgatgatgatg 326  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  38613657 aaaattactcataattttgaaagctgggaccagagaagatgatgatg 38613611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 7290038 - 7290211
Alignment:
Q  12 cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcatt 108  Q
    ||||||||||||||| || |||| ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||| ||||| ||||||||||||||||    
T  7290038 cttatcttgtttatggtttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgtttggagaccatttgttctcatt 7290137  T
Q  109 gattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 181  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||    
T  7290138 gattaccactatctcttgctccacacatcaatgtttatttcattggtgtgagtttggaaccggattcacaacag 7290211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 4760187 - 4760366
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt--ttgcttggaaaccat 97  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||| ||||| | |||||||||||||||||| |||||||||  |||||||||||||||    
T  4760187 ttcctttcttgcttatcttgtttatgctttgttatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttgcttggaaaccat 4760286  T
Q  98 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    || | ||||||||||||||||||| || |||||||||||| |||||  |||||||| ||||||||||||||||| ||||||||    
T  4760287 tt-tgctcattgattaccactatctctagctccacacatctttgtt--tttcattgatgtgagtttcaaccggattcacaaca 4760366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 36979362 - 36979184
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgtt--tgcttggaaaccat 97  Q
    ||||||||||||||||||||||| ||||| | || ||||||||||| ||||| | |||||||||||||||||| ||||||||||  ||||||||||||||    
T  36979362 ttcctttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttgcttggaaaccat 36979264  T
Q  98 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    ||  | |||||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||    
T  36979263 tttgt-tcattgattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaaca 36979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 30655627 - 30655448
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggtttt-gttgtt--tgcttggaaacca 96  Q
    ||||||||||||||||||||||||||||| |||| |||| |||||| ||||| | |||||||||||||||||| |||| ||||||  |||||||||||||    
T  30655627 ttcctttcttgcttatcttgtttatgctttgttatctctatgtgtggttttgctctacactagtctagggctgttttttgttgttgttgcttggaaacca 30655528  T
Q  97 tttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    |||  | |||||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  30655527 ttttgt-tcattgattaccactatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 30655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 18870674 - 18870849
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgtttgcttggaaaccattt 99  Q
    ||||||||||||||||||||||| ||||| | || ||||||||||| ||||| | || || ||||||||||   ||||||||||||||||||||||||||    
T  18870674 ttcctttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctaaacaagtctagggcgttttttgttgtttgcttggaaaccattt 18870772  T
Q  100 gttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
       ||||| |||||||| |||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  18870773 -aactcatagattaccattatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 18870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 10689255 - 10689442
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgtt--tgcttggaaaccat 97  Q
    |||||||||| |||||||||||| ||||| | || ||||||||||| ||||| | |||||||  |||||| || ||||||||||  ||||||||||||||    
T  10689255 ttcctttcttacttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactacactagggttgtttttgttgttgttgcttggaaaccat 10689353  T
Q  98 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacagaagcaaaa 189  Q
    | |  ||||| ||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||| || ||||||| || |||||    
T  10689354 taga-ctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccgaaaacacaacacaatcaaaa 10689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 18853280 - 18853457
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttgttatacactagtctagggc---tggttttgttgtttgcttggaaacca 96  Q
    ||||||||||||||||||||||| ||| ||| || ||||||||||| ||||| | || || ||||||||||   |  |||||||||||||||||||||||    
T  18853280 ttcctttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctaaacaagtctagggcgtttttttttgttgtttgcttggaaacca 18853378  T
Q  97 tttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    ||||  ||||| ||||||||||||| |||||||||||||||    ||| |||| ||||||||||||||||||||| ||||||||    
T  18853379 tttg-actcatagattaccactatctcttgctccacacatc----tttgtttcgttggtgtgagtttcaaccggattcacaaca 18853457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 39784963 - 39785086
Alignment:
Q  39 ttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacat 136  Q
    ||||||| ||||| ||||||||||  |||||||| |||  |||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  39784963 ttgtgtggttttgctatacactagcttagggctgttttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacat 39785062  T
Q  137 catt-gtttatttcattggtgtga 159  Q
    | || |||||||||||||||||||    
T  39785063 ctttggtttatttcattggtgtga 39785086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 25328418 - 25328540
Alignment:
Q  39 ttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacat 136  Q
    ||||||| ||||| ||||||||||| ||||| || |||  ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  25328418 ttgtgtggttttgctatacactagt-tagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacat 25328516  T
Q  137 cattg-tttatttcattggtgtga 159  Q
    ||||| |||||||||||| |||||    
T  25328517 cattgatttatttcattgttgtga 25328540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 33037922 - 33038063
Alignment:
Q  5 tttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtt--tgcttggaaaccatttg 100  Q
    ||||||||||||||||||| ||||| | || ||||||||||| ||||| | |||||||||||||||||| || ||||||||  ||||||||||||||||     
T  33037922 tttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactagtctagggctgtttattgttgttgttgcttggaaaccatttt 33038020  T
Q  101 ttctcattgattaccactatcacttgctccacacatcattgttt 144  Q
     | |||||||||||||||||| ||||||||||||||| ||||||    
T  33038021 gt-tcattgattaccactatctcttgctccacacatctttgttt 33038063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 35745353 - 35745213
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  35745353 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 35745254  T
Q  121 cacttgctccacacatcatt-gtttatt-tcattggtgtga 159  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  35745253 cacttgctccacacatcattggtttattctcattggtgtga 35745213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 10684452 - 10684528
Alignment:
Q  85 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  10684452 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 10684528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 19752609 - 19752683
Alignment:
Q  106 attgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 182  Q
    |||||||||||||  |  |||||||||||||| |||||| |||||||||||||| |||  |||||| ||||||||||    
T  19752609 attgattaccacttccttttgctccacacatctttgttt-tttcattggtgtga-tttttaccggattcacaacaga 19752683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 1457262 - 1457446
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccat 97  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| |||||    
T  1457262 ttcctttctttcttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccat 1457361  T
Q  98 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 181  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  1457362 ttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaacag 1457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 27444943 - 27444771
Alignment:
Q  12 cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcatt 108  Q
    |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| | |  ||||||||||||||| ||||||||| ||||||    
T  27444943 cttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcatt 27444844  T
Q  109 gattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 180  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  27444843 gattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 27444771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 43592252 - 43592080
Alignment:
Q  12 cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcatt 108  Q
    |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||    
T  43592252 cttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcatt 43592153  T
Q  109 gattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 180  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||  ||||||| ||||||||    
T  43592152 gattaccactatctcttgctccacacatcattgtttatttcattgatgtgactttggaaccggattcacaaca 43592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 43598697 - 43598525
Alignment:
Q  12 cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcatt 108  Q
    |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||    
T  43598697 cttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcatt 43598598  T
Q  109 gattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 180  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43598597 gattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 43604189 - 43604017
Alignment:
Q  12 cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcatt 108  Q
    |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||    
T  43604189 cttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcatt 43604090  T
Q  109 gattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 180  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43604089 gattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43604017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 43609681 - 43609509
Alignment:
Q  12 cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcatt 108  Q
    |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||    
T  43609681 cttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcatt 43609582  T
Q  109 gattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 180  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43609581 gattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 27449787 - 27449615
Alignment:
Q  12 cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcatt 108  Q
    |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| | |  ||||||||||||||| ||||||||| ||||||    
T  27449787 cttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcatt 27449688  T
Q  109 gattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 180  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||    
T  27449687 gattaccactatctcttgctccacatatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 27449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 30631391 - 30631227
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgtt--tgcttggaaaccat 97  Q
    |||||||||| |||||||||||||||||| |||| || | | |||| ||||| |||||||||||||||||||| ||||||||||  |||||| |||||||    
T  30631391 ttcctttcttacttatcttgtttatgctttgttatctatatatgtgattttgctatacactagtctagggctg-ttttgttgttgttgcttgaaaaccat 30631293  T
Q  98 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt 163  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  30631292 ttgttctcatagattaccactatctcttgctccacacatcattgtttatttcatttgtgtgagttt 30631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 28807687 - 28807837
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgt--tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattg 109  Q
    ||||||||||||||||||||||||||||| ||| |||| |  ||||||||||  |||||||| || ||||||||||||||||| ||||||||||||||||    
T  28807687 ttatcttgtttatgcttgttagctctttgagtggttttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattg 28807786  T
Q  110 attaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  28807787 attatcactatcacttgctccacacatcattggtttatttcattggtgtga 28807837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 15044666 - 15044512
Alignment:
Q  5 tttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgt 101  Q
    ||||||||||||||||||||||||| |  | ||||| ||||| ||||| |||||||||||||||||||| |||  ||||||| | ||||| |||||||||    
T  15044666 tttcttgcttatcttgtttatgctttggaatctctt-gtgtggttttgctatacactagtctagggctgttttgttgttgttggtttggagaccatttgt 15044568  T
Q  102 tctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    |||||||||||||||||||||||||||| |||| ||||||  ||||||||||||||||    
T  15044567 tctcattgattaccactatcacttgctctacacgtcattg--tatttcattggtgtga 15044512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 37556737 - 37556887
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattga 110  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||   ||||| |||  ||||||| |||||||  ||||||| |||||| ||    
T  37556737 ttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgctctcataga 37556836  T
Q  111 ttaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 159  Q
    ||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37556837 ttatcactatcacttgctccacacatctttggtttattatcattggtgtga 37556887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 37561559 - 37561709
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattga 110  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||   ||||| |||  ||||||| |||||||  ||||||| |||||| ||    
T  37561559 ttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgctctcataga 37561658  T
Q  111 ttaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 159  Q
    ||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37561659 ttatcactatcacttgctccacacatctttggtttattatcattggtgtga 37561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 2785337 - 2785197
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  2785337 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 2785238  T
Q  121 cacttgctccacacatcatt-gtttatt-tcattggtgtga 159  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  2785237 cacttgctccacacatcattggtttattctcattggtgtga 2785197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 31401973 - 31402113
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| ||||| | |||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  31401973 tatgcttgttagctcttagtgtggttttgctttacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 31402072  T
Q  121 cacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  31402073 cacttgctccacacatcattgatttattctcattggtgtga 31402113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 31180142 - 31180079
Alignment:
Q  115 cactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||    
T  31180142 cactatctcttgctccacacatcattgtta--ttcattggtgtgagtttcaaccggattcacaaca 31180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 31397116 - 31397256
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| ||||| | |||| ||| ||  || || |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  31397116 tatgcttgttagctcttagtgtggttttgctttacattaggcttaggatgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 31397215  T
Q  121 cacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  31397216 cacttgctccacacatcattgatttattctcattggtgtga 31397256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 33791278 - 33791158
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    |||||||||||||||| | |||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  33791278 tatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 33791179  T
Q  121 cacttgctccacacatcattg 141  Q
    |||||||||||||||||||||    
T  33791178 cacttgctccacacatcattg 33791158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 180
Target Start/End: Complemental strand, 38192105 - 38191983
Alignment:
Q  55 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 152  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  38192105 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 38192011  T
Q  153 ggtgtgagtttcaaccggaatcacaaca 180  Q
    ||||||||||||||||||| ||||||||    
T  38192010 ggtgtgagtttcaaccggattcacaaca 38191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 180
Target Start/End: Complemental strand, 38219330 - 38219208
Alignment:
Q  55 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 152  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  38219330 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 38219236  T
Q  153 ggtgtgagtttcaaccggaatcacaaca 180  Q
    ||||||||||||||||||| ||||||||    
T  38219235 ggtgtgagtttcaaccggattcacaaca 38219208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 33768141 - 33768021
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    |||||||||||||||| | |||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||   ||||||  ||||| ||||| | ||||    
T  33768141 tatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggtcatttgcactcatagattatctctat 33768042  T
Q  121 cacttgctccacacatcattg 141  Q
    |||||||||||||||||||||    
T  33768041 cacttgctccacacatcattg 33768021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 31180196 - 31180138
Alignment:
Q  4 ctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacacta 61  Q
    ||||||| |||||||||||||||||| |||| ||||||||||| ||||| |||||||||    
T  31180196 ctttctttcttatcttgtttatgctttgttatctctttgtgtggttttgctatacacta 31180138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 35387527 - 35387474
Alignment:
Q  124 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  35387527 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 24024433 - 24024589
Alignment:
Q  5 tttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgtt 102  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||   ||||| |||  ||||||||||||||| ||||||||||    
T  24024433 tttcttgcttatcttgtttatgcttgttagctctttgtgtggttttgctatatactagtcataggctgttttgttgttgtttgcttggagaccatttgtt 24024532  T
Q  103 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24024533 ctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 24024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 12396885 - 12396735
Alignment:
Q  11 gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcat 107  Q
    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||    
T  12396885 gcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcat 12396787  T
Q  108 tgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12396786 tgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 12396735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 12406305 - 12406155
Alignment:
Q  11 gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcat 107  Q
    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||    
T  12406305 gcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcat 12406207  T
Q  108 tgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12406206 tgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 12406155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 19992283 - 19992135
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || |||||||  |||||||| ||||||||||||||||||    
T  19992283 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtaagcttggaagccatttgttctcattgat 19992184  T
Q  112 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    || ||||||||| ||||||||||||| || |||||||||||||||||||    
T  19992183 tatcactatcacctgctccacacatctttggtttatttcattggtgtga 19992135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 21812353 - 21812501
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 111  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||||  |||||||| || |||||||| |||||||| ||||||| |||||| |||    
T  21812353 ttatcttgtttatgcttgttaactctttgtgtggttttgctatacactagcttagggctgtttgttgttgttagcttggaagccatttgctctcatagat 21812452  T
Q  112 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||||    
T  21812453 taccactatctcttgctccacacatctttggtttatttcattggtgtga 21812501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 4866667 - 4866553
Alignment:
Q  47 ttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgttt 144  Q
    ||||| |||||||||||||||| ||| |||  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  4866667 ttttgctatacactagtctaggactgttttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcattgttt 4866568  T
Q  145 atttcattggtgtga 159  Q
    |||||||||||||||    
T  4866567 atttcattggtgtga 4866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 31109689 - 31109844
Alignment:
Q  5 tttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgt 101  Q
    ||||||| ||||||||||||||||| |  | ||||| ||||| ||||| ||||||||||| |||||||| |||  ||||||| ||||||| |||||||||    
T  31109689 tttcttgtttatcttgtttatgctttggaatctctt-gtgtggttttgctatacactagt-tagggctgttttgttgttgttggcttggagaccatttgt 31109786  T
Q  102 tctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  31109787 tctcattgattatcactatcacttgctgcacacatcattgtttatttcattggtgtga 31109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 20357664 - 20357837
Alignment:
Q  5 tttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggtt---ttgttgtttgcttggaaaccatttg 100  Q
    |||||||||||||||||||  |||| |||| ||||||||||| ||||| | |||||||||||||||||| ||   |||||||| ||||||| ||||||||    
T  20357664 tttcttgcttatcttgttt--gctttgttatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttagcttggagaccatttg 20357761  T
Q  101 ttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
      ||||| ||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  20357762 -gctcatagattaccactatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 20357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 2057910 - 2057763
Alignment:
Q  35 ctctttgtgtgcttttgttatacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctcca 131  Q
    ||||||||||| ||||| | || || |||||||||| | ||||||||||   |||||||||||||||||  ||||| ||||||||||||| |||||||||    
T  2057910 ctctttgtgtggttttgctctaaacaagtctagggcggtttttgttgttgtttgcttggaaaccatttga-ctcatagattaccactatctcttgctcca 2057812  T
Q  132 cacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 182  Q
    |||||| ||||||  ||||||||||||||||||||||||| ||||||||||    
T  2057811 cacatctttgttt--ttcattggtgtgagtttcaaccggattcacaacaga 2057763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 1533608 - 1533730
Alignment:
Q  55 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 152  Q
    |||||||| || |||||||||||||||||  |||||||||||  ||| ||||||||||||||||||||   |||||||||||||| ||||   |||||||    
T  1533608 tacactagactggggctggttttgttgttgttgcttggaaac--ttttttctcattgattaccactatattttgctccacacatctttgt---tttcatt 1533702  T
Q  153 ggtgtgagtttcaaccggaatcacaaca 180  Q
    ||||||||||| ||||||| ||||||||    
T  1533703 ggtgtgagttttaaccggattcacaaca 1533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 180
Target Start/End: Complemental strand, 21645940 - 21645818
Alignment:
Q  55 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 152  Q
    |||||||| ||||||||| ||||||||||  |||||||| ||  |||   ||||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  21645940 tacactagactagggctgtttttgttgttgttgcttggagacacttta--ctcatagattaccactcccttttgctccacacatctttgttta---catt 21645846  T
Q  153 ggtgtgagtttcaaccggaatcacaaca 180  Q
    ||||||||||| ||||||| ||||||||    
T  21645845 ggtgtgagttttaaccggattcacaaca 21645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 2479221 - 2479148
Alignment:
Q  105 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 180  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  2479221 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 2479148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 47263562 - 47263485
Alignment:
Q  105 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaacagaag 184  Q
    |||||||||||||| ||  ||||||||| |||| ||||||  ||||||||||||| | |||||||||| ||||||||||||    
T  47263562 cattgattaccact-tcctttgctccacgcatctttgttt--ttcattggtgtgattatcaaccggaactcacaacagaag 47263485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 16879970 - 16879894
Alignment:
Q  85 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  16879970 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 16879894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 16884826 - 16884750
Alignment:
Q  85 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  16884826 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 16884750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 24261511 - 24261587
Alignment:
Q  85 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  24261511 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 24261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 24266390 - 24266466
Alignment:
Q  85 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  24266390 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 24266466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 6438471 - 6438324
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||| ||||| ||||||||||||    
T  6438471 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccattggttctcattgat 6438372  T
Q  112 taccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6438371 taccactatcacttgctccacacatcattgtttatttcattggtgtga 6438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 11856921 - 11856795
Alignment:
Q  35 ctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccac 132  Q
    ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  11856921 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 11856822  T
Q  133 acatcattgtttatttcattggtgtga 159  Q
    |||||||||||||||||||||||||||    
T  11856821 acatcattgtttatttcattggtgtga 11856795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 14737715 - 14737838
Alignment:
Q  38 tttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacaca 135  Q
    |||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  14737715 tttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacaca 14737814  T
Q  136 tcattgtttatttcattggtgtga 159  Q
    ||||||||||||||||||||||||    
T  14737815 tcattgtttatttcattggtgtga 14737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 14742547 - 14742697
Alignment:
Q  11 gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcat 107  Q
    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  |||||| |||||||| |||||||||||||||    
T  14742547 gcttatcttgttt-tgctttgatatctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtatgcttggagaccatttgttctcat 14742645  T
Q  108 tgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14742646 tgattatcactatcacttgctccacacatcattgtttatttcattggtgtga 14742697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 22010808 - 22010958
Alignment:
Q  11 gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcat 107  Q
    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||| ||||||||| | |||  ||||||||||||||| |||||||||||||||    
T  22010808 gcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcat 22010906  T
Q  108 tgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22010907 tgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 22010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 28155684 - 28155832
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattga 110  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||   ||||| |||  ||||||| ||||| | |||||||| |||||||||    
T  28155684 ttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttgaagaccatttgctctcattga 28155783  T
Q  111 ttaccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  28155784 ttatcactatcacttgctccacacatcattgtttattgcattggtgtga 28155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 28184478 - 28184325
Alignment:
Q  11 gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccattt--gttctc 105  Q
    ||||||||||||||||||| |  | ||||| ||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| |||||||  ||||||    
T  28184478 gcttatcttgtttatgctttggaatctctt-gtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttttgttctc 28184380  T
Q  106 attgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  28184379 attgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 28184325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 35 - 180
Target Start/End: Original strand, 30125940 - 30126084
Alignment:
Q  35 ctctttgtgtgcttttgttatacactagtctagggctggttttgtt---gtttgcttggaaaccatttgttctcattgattaccactatcacttgctcca 131  Q
    ||||||||||| ||||| | |||||||||||||||||| |||||||   ||| ||||||| ||||||||  ||||| ||||| ||||| | |||||||||    
T  30125940 ctctttgtgtggttttgctctacactagtctagggctgtttttgttgtagttagcttggagaccatttg-gctcatagattatcactacctcttgctcca 30126038  T
Q  132 cacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    |||||| ||||   |||||||||||||| ||||||||||| ||||||||    
T  30126039 cacatctttgt---tttcattggtgtgattttcaaccggattcacaaca 30126084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 5674934 - 5675057
Alignment:
Q  55 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 152  Q
    |||||||| ||||||||||||||||||||  ||||||| || | ||| | ||| |||||||||||||||  |||||||||||||| ||||||   |||||    
T  5674934 tacactagactagggctggttttgttgttgttgcttgggaaactttt-tactctttgattaccactatcttttgctccacacatctttgttt---tcatt 5675029  T
Q  153 ggtgtgagtttcaaccggaatcacaaca 180  Q
    ||||||||||| ||||||| ||||||||    
T  5675030 ggtgtgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 6005379 - 6005239
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  6005379 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 6005280  T
Q  121 cacttgctccacacatcatt-gtttatt-tcattggtgtga 159  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  6005279 cacttgctccacacatcattggtttattctcattggtgtga 6005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 16838706 - 16838566
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| ||||| |  |||||||  ||||| ||||| | ||||    
T  16838706 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttgaaggccatttgcactcatagattatctctat 16838607  T
Q  121 cacttgctccacacatcatt-gtttatt-tcattggtgtga 159  Q
    ||||||||||||| |||||| ||||||| ||||||||||||    
T  16838606 cacttgctccacatatcattggtttattctcattggtgtga 16838566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 33330560 - 33330690
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgctttt-gttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattg 109  Q
    |||||||||| |||||||||||||||| ||||| |||| | |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| |    
T  33330560 ttatcttgtt-atgcttgttagctcttagtgtggtttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatag 33330658  T
Q  110 attaccactatcacttgctccacacatcattg 141  Q
    |||| | |||||||||||||||||||||||||    
T  33330659 attatctctatcacttgctccacacatcattg 33330690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 33336057 - 33336207
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgt-tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattg 109  Q
    |||||||||| |||||||||||||||| ||||| ||||   |||||| ||| ||  ||||| |||  ||||||| | |||||  |||||||  ||||| |    
T  33336057 ttatcttgtt-atgcttgttagctcttagtgtggtttttactatacattaggcttaggctgttttgttgttgttagtttggaggccatttgcactcatag 33336155  T
Q  110 attaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 159  Q
    |||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  33336156 attatctctatcacttgctccacacatcattggtttattctcattggtgtga 33336207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 5343443 - 5343322
Alignment:
Q  23 tatgcttgttagctctttgtgtgctttt-gttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccacta 119  Q
    ||||||||||||||||| ||||| |||| | |||||  ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | |||    
T  5343443 tatgcttgttagctcttagtgtggtttttgctatactttaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctcta 5343344  T
Q  120 tcacttgctccacacatcattg 141  Q
    ||||||||||||||||||||||    
T  5343343 tcacttgctccacacatcattg 5343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 31936470 - 31936398
Alignment:
Q  105 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    ||||||||||||||  |  |||||||||||||| |||||  |||||||||||||| ||| ||||||| ||||||||    
T  31936470 cattgattaccacttccttttgctccacacatctttgtt--tttcattggtgtga-ttttaaccggattcacaaca 31936398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 51520430 - 51520257
Alignment:
Q  12 cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcatt 108  Q
    |||||||||||||||||| |||| |||||||| || ||||| |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||    
T  51520430 cttatcttgtttatgctttgttatctctttgtatggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcatt 51520331  T
Q  109 gattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 181  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  51520330 gattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaacag 51520257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 3814008 - 3813846
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgctttt-gttatacactagtctagggctggttt--tgttgtttgcttggaaaccat 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||||||| ||| |||  ||||||||||||||| |||||    
T  3814008 ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtggtttttgcgatacactagtctaggactgttttgttgttgtttgcttggagaccat 3813909  T
Q  98 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3813908 ttgctctcattgattaccactatcacttgctccacacatcattggtttatttcattggtgtga 3813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 56146823 - 56146996
Alignment:
Q  12 cttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcatt 108  Q
    |||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||    
T  56146823 cttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcatt 56146922  T
Q  109 gattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 181  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||    
T  56146923 gattaccactatctcttgctccacacatcattgtttatttcattggtgtgaatttggaaccggattcacaacag 56146996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 18855697 - 18855549
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||| ||||||||||||||||||    
T  18855697 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgat 18855598  T
Q  112 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    || |||||||||||||||||||||||||| |||||||||||||||||||    
T  18855597 tatcactatcacttgctccacacatcattggtttatttcattggtgtga 18855549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 9224518 - 9224668
Alignment:
Q  11 gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcat 107  Q
    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||    
T  9224518 gcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcat 9224616  T
Q  108 tgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9224617 tgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 9224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 9229305 - 9229455
Alignment:
Q  11 gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcat 107  Q
    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||    
T  9229305 gcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcat 9229403  T
Q  108 tgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9229404 tgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 9229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 24741925 - 24741748
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgtt--tgcttggaaaccat 97  Q
    ||||||||||||||||||||||| ||||| | || ||||||||||| ||||| | |||||||||||||||||| ||||||||||  ||||||||||||||    
T  24741925 ttcctttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttgcttggaaaccat 24741827  T
Q  98 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    ||  | |||||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  24741826 tttgt-tcattgattaccactatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 24741748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 29760626 - 29760449
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgtt--tgcttggaaaccat 97  Q
    ||||||||||||||||||||||| ||||| |||  ||||||||||| ||||| | ||||||||||||||| || ||||||||||  ||||||||||||||    
T  29760626 ttcctttcttgcttatcttgttt-tgctttgttctctctttgtgtggttttgctctacactagtctagggttg-ttttgttgttgttgcttggaaaccat 29760529  T
Q  98 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    ||  | | |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||    
T  29760528 tttgttt-attgattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaaca 29760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 45347957 - 45348079
Alignment:
Q  39 ttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacat 136  Q
    ||||||| ||||| | |||||||||||||| ||| |||  ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||    
T  45347957 ttgtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacat 45348056  T
Q  137 cattgtttatttcattggtgtga 159  Q
    |||||||||||||||||||||||    
T  45348057 cattgtttatttcattggtgtga 45348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 45357436 - 45357558
Alignment:
Q  39 ttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacat 136  Q
    ||||||| ||||| | |||||||||||||| ||| |||  ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||    
T  45357436 ttgtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacat 45357535  T
Q  137 cattgtttatttcattggtgtga 159  Q
    |||||||||||||||||||||||    
T  45357536 cattgtttatttcattggtgtga 45357558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 5732618 - 5732486
Alignment:
Q  28 ttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcactt 125  Q
    |||||||||||||||||| ||||  ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  5732618 ttgttagctctttgtgtggttttactatacactagcttagggctgttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcactt 5732519  T
Q  126 gctccacacatcattgtttatttcattggtgtga 159  Q
    ||||||||||||||||| | ||||||||||||||    
T  5732518 gctccacacatcattgtat-tttcattggtgtga 5732486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 7167229 - 7167049
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgtt--tgcttggaaaccat 97  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||| ||||| | |||||||||||||||||| ||||||||||  ||||||||||||||    
T  7167229 ttcctttcttgcttatcttgtttatgctttgttatctctttgtgtggttttgctctacactagtctagggctg-ttttgttgttgttgcttggaaaccat 7167131  T
Q  98 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 182  Q
    || | ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||    
T  7167130 tt-tgctcatagattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaacaga 7167049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 35 - 159
Target Start/End: Original strand, 22173330 - 22173456
Alignment:
Q  35 ctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccac 132  Q
    ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  22173330 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 22173429  T
Q  133 acatcattgtttatttcattggtgtga 159  Q
    |||||||||||||||||||||||||||    
T  22173430 acatcattgtttatttcattggtgtga 22173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 2671698 - 2671876
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgtt---tgcttggaaacca 96  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||| ||||  | |||||||| ||||||||| ||||||||||   |||||||| ||||    
T  2671698 ttcctttcttgcttatcttgttt-tgctttgttatctctttgtgtggtttttctctacactagactagggctgtttttgttgttgtttgcttggagacca 2671796  T
Q  97 tttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    ||||  ||||| ||||||||||||| ||||||||||||||| ||||   |||||||||||||||||| ||||||| ||||||||    
T  2671797 tttgg-ctcatagattaccactatctcttgctccacacatctttgt---tttcattggtgtgagttttaaccggattcacaaca 2671876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 18656388 - 18656256
Alignment:
Q  28 ttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcactt 125  Q
    |||||||||||||||||| ||||  ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  18656388 ttgttagctctttgtgtggtttttctatacactagcttagggctgttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcactt 18656289  T
Q  126 gctccacacatcattgtttatttcattggtgtga 159  Q
    ||||||||||||||||| | ||||||||||||||    
T  18656288 gctccacacatcattgtat-tttcattggtgtga 18656256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 28503982 - 28504145
Alignment:
Q  16 tcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt--ttgcttggaaaccatttgttctcattgatt 112  Q
    |||||||||||||| |||| ||||||||||| ||||| |||||||||||| |||||| ||||||||||  ||||||||||||||||| ||||||| ||||    
T  28503982 tcttgtttatgctttgttatctctttgtgtggttttgctatacactagtcaagggct-gttttgttgttgttgcttggaaaccattt-ttctcatagatt 28504079  T
Q  113 accactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    | ||||| |  ||||||||||||||||||||   ||||||||||||||||   |||||| ||||||||    
T  28504080 atcactaccttttgctccacacatcattgtt--attcattggtgtgagttaagaccggattcacaaca 28504145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 8739175 - 8739354
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgctttt-gttatacactagtctagggctggttttgttgtt---tgcttggaaacc 95  Q
    ||||||||||||||||||||||| ||||| | || ||||||||||| |||| ||| || || |||||||||| | ||||||||||   ||||||||||||    
T  8739175 ttcctttcttgcttatcttgttt-tgctttggtatctctttgtgtggtttttgttctaaacaagtctagggcggtttttgttgttatttgcttggaaacc 8739273  T
Q  96 atttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    |||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | ||||||||    
T  8739274 atttga-ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattcacaaca 8739354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 9091413 - 9091592
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgctttt-gttatacactagtctagggctggttttgttgtt---tgcttggaaacc 95  Q
    ||||||||||||||||||||||| ||||| | || ||||||||||| |||| ||| || || |||||||||| | ||||||||||   ||||||||||||    
T  9091413 ttcctttcttgcttatcttgttt-tgctttggtatctctttgtgtggtttttgttctaaacaagtctagggcggtttttgttgttatttgcttggaaacc 9091511  T
Q  96 atttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    |||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | ||||||||    
T  9091512 atttga-ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattcacaaca 9091592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 2677202 - 2677351
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattga 110  Q
    |||||||||| |||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  ||||||| |||||| ||    
T  2677202 ttatcttgtt-atgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgctctcataga 2677300  T
Q  111 ttaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 159  Q
    ||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2677301 ttatctctatcacttgctccacacatcattggtttattctcattggtgtga 2677351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 40372986 - 40373085
Alignment:
Q  77 tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcac 176  Q
    ||||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| ||||    
T  40372986 tgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcac 40373081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 2673046 - 2673195
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattga 110  Q
    |||||||||| |||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  ||||||  |||||| ||    
T  2673046 ttatcttgtt-atgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttactctcataga 2673144  T
Q  111 ttaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 159  Q
    ||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2673145 ttatctctatcacttgctccacacatcattggtttattctcattggtgtga 2673195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 10207904 - 10207755
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattga 110  Q
    |||||||||| |||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||    
T  10207904 ttatcttgtt-atgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcataga 10207806  T
Q  111 ttaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 159  Q
    ||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  10207805 ttatctctatcacttgctccacacatcattggtttattctcattggtgtga 10207755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 8477301 - 8477170
Alignment:
Q  49 ttgttatacactagtctagggctggttttgttgt--ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttat 146  Q
    ||||| ||||||||||||||||||||||||||||  |||||||| || | ||| | ||| |||||||||||||||  |||||||||||||| ||||   |    
T  8477301 ttgttctacactagtctagggctggttttgttgttgttgcttgggaaac-tttttactctttgattaccactatcttttgctccacacatctttgt---t 8477206  T
Q  147 ttcattggtgtgagtttca-accggaatcacaacag 181  Q
    ||||||||||||||||| | |||||| |||||||||    
T  8477205 ttcattggtgtgagttttataccggattcacaacag 8477170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 8512122 - 8512037
Alignment:
Q  76 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    |||||||| |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8512122 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8512037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 8517002 - 8516917
Alignment:
Q  76 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    |||||||| |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8517002 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8516917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 24968069 - 24967957
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  24968069 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 24967970  T
Q  121 cacttgctccaca 133  Q
    |||||||||||||    
T  24967969 cacttgctccaca 24967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 39445470 - 39445322
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||| |||||||||| |||||||    
T  39445470 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttcacattgat 39445371  T
Q  112 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    || |||||||||||||||||||||||||| |||||||||||||||||||    
T  39445370 tatcactatcacttgctccacacatcattggtttatttcattggtgtga 39445322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 44023987 - 44024135
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||| ||||||||||||||||||    
T  44023987 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgat 44024086  T
Q  112 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    || |||||||| ||||||||||||||||| |||||||||||||||||||    
T  44024087 tatcactatcagttgctccacacatcattggtttatttcattggtgtga 44024135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 25445204 - 25445352
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 111  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||| ||||||||||||||||||    
T  25445204 ttatcttgtttacgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgat 25445303  T
Q  112 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    || ||||||| |||||||||||||||||| |||||||||||||||||||    
T  25445304 tatcactatcgcttgctccacacatcattggtttatttcattggtgtga 25445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 1055126 - 1055274
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || |||||||  ||||||||  ||||||||| |||||||    
T  1055126 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtaagcttggaagacatttgttcacattgat 1055225  T
Q  112 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    || |||||||||||||||||||||||||| |||||||||||||||||||    
T  1055226 tatcactatcacttgctccacacatcattggtttatttcattggtgtga 1055274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 41398215 - 41398060
Alignment:
Q  12 cttatcttgtttatgctt-gttagctctttgtgtgcttttgt--tatacactagtctagggctggttt-----tgttgtttgcttggaaaccatttgttc 103  Q
    |||||||||||||||||| | || ||||||||||| |||| |  ||||||||||| |||||||| |||     ||||||||||||||| ||||| |||||    
T  41398215 cttatcttgtttatgctttggtatctctttgtgtggttttttgctatacactagt-tagggctgttttgttgttgttgtttgcttggagaccatatgttc 41398117  T
Q  104 tcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  41398116 tcattgattatcactatcacttgctccacacataattggtttatttcattggtgtga 41398060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 41386650 - 41386571
Alignment:
Q  81 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  41386650 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 41386571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 43988589 - 43988709
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| || || |||||| ||| ||  ||||| |||  ||||||| |||||||| ||||||| |||||| ||||| | ||||    
T  43988589 tatgcttgttagctcttagtgtggttgtgctatacattaggcttaggctgttttgttgttgttagcttggaagccatttgctctcatagattatctctat 43988688  T
Q  121 cacttgctccacacatcattg 141  Q
    |||||||||||||||||||||    
T  43988689 cacttgctccacacatcattg 43988709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 24787481 - 24787624
Alignment:
Q  5 tttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggtttt----gttgtt--tgcttggaaaccat 97  Q
    |||||||||||||||||||  |||| |||| ||||||||||| ||||| | ||||  |||||||||||| ||||    ||||||  ||||||||||||||    
T  24787481 tttcttgcttatcttgttt--gctttgttatctctttgtgtggttttgctctacataagtctagggctgttttttgttgttgttgttgcttggaaaccat 24787578  T
Q  98 ttgttctcattgattaccactatcacttgctccacacatcattgttt 144  Q
    || | |||||| |||||||||||| ||||||||||||||| ||||||    
T  24787579 tt-tgctcatttattaccactatctcttgctccacacatctttgttt 24787624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 24202932 - 24203054
Alignment:
Q  55 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 152  Q
    ||||||||| |||||||| |||  ||||||||||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| ||||||   |||||    
T  24202932 tacactagtttagggctgttttgttgttgtttgcttggagacacttta--cacatagattaccactcccttttgctccacacatctttgttt---tcatt 24203026  T
Q  153 ggtgtgagtttcaaccggaatcacaaca 180  Q
    ||||||||||| ||||||| ||||||||    
T  24203027 ggtgtgagttttaaccggattcacaaca 24203054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 19359079 - 19359132
Alignment:
Q  124 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  19359079 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 19359132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 333 - 185
Alignment:
Q  13 ttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgat 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||| ||||||||||||||||||    
T  333 ttatcttgtttatgcttgttagctctttgtgtggttttgctatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgat 234  T
Q  112 taccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    || ||| ||||||||||||||||||| || |||||||||||||||||||    
T  233 tatcaccatcacttgctccacacatctttggtttatttcattggtgtga 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 35173 - 35323
Alignment:
Q  11 gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcat 107  Q
    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||    
T  35173 gcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcat 35271  T
Q  108 tgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35272 tgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 9742 - 9902
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatt 98  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||  |||||||| |||  ||||||||| ||||| ||||||    
T  9742 ttcctttcttgcttatcttgtttatgcttgttagctctt-gtgtggttttgctatatactagcttagggctgttttgttgttgtttggttggagaccatt 9840  T
Q  99 tgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    || |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  9841 tgctctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 9902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 1 - 143
Alignment:
Q  11 gcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggtt--ttgttgtttgcttggaaaccatttgttctcatt 108  Q
    |||||||||||||||||||||||||||   ||||| ||||| ||||||||||  |||||||| ||  ||||||||| |||||| |||||||| |||||||    
T  1 gcttatcttgtttatgcttgttagctc---gtgtggttttgctatacactagcttagggctgttttgttgttgtttacttggagaccatttgctctcatt 97  T
Q  109 gattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    |||      ||||||||||||||||||||||| |||||||| ||||||||||    
T  98 gat------tatcacttgctccacacatcattggtttatttaattggtgtga 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 44312735 - 44312885
Alignment:
Q  11 gcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcat 107  Q
    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||| ||||||||| | |||  ||||||||||||||| |||||||||||||||    
T  44312735 gcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcat 44312833  T
Q  108 tgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312834 tgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 44312885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 11099039 - 11099219
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttttgttgt--ttgcttggaaaccat 97  Q
    |||||||||| |||||||||||| ||||| | || ||||||||||| ||||| | |||||||||||||||||| |||||||||  |||||||||||||||    
T  11099039 ttcctttcttccttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttgcttggaaaccat 11099137  T
Q  98 ttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 182  Q
    || |  |||||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||||    
T  11099138 tt-tgttcattgattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaacaga 11099219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 32246764 - 32246607
Alignment:
Q  5 tttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgt 101  Q
    ||||||||||||||||||||||||| |  | ||||| ||||| ||||| |||||||||||||||| ||| |||  ||||||| ||||||| |||||||||    
T  32246764 tttcttgcttatcttgtttatgctttggaatctctt-gtgtggttttgctatacactagtctaggactgttttgttgttgttagcttggagaccatttgt 32246666  T
Q  102 tctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32246665 tctcatagattaccactatcacttgctccacacatcattggtttatttcattggtgtga 32246607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 14291473 - 14291295
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggtt---ttgttgtttgcttggaaacca 96  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||| ||||| | |||| ||||||||||||| ||   |||||||||||||||||||||    
T  14291473 ttcctttcttgcttatcttgttt-tgctttgttatctctttgtgtggttttgctctacattagtctagggctgtttttgttgttgtttgcttggaaacca 14291375  T
Q  97 tttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    ||| | | ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| ||||||||    
T  14291374 ttt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcacaaca 14291295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 9296513 - 9296691
Alignment:
Q  1 ttcctttcttgcttatcttgtttatgctt-gttagctctttgtgtgcttttgttatacactagtctagggctggtt---ttgttgtttgcttggaaacca 96  Q
    |||||||||||||| |||||||| ||||| |||| ||||||||||| ||||| | |||||||| ||||||||| ||   |||||||||||||||||||||    
T  9296513 ttcctttcttgcttttcttgttt-tgctttgttatctctttgtgtggttttgctctacactagactagggctgtttttgttgttgtttgcttggaaacca 9296611  T
Q  97 tttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 180  Q
    ||| | ||||| ||||||||||| |  |||||||||||||| ||||   |||||||||||||||||| ||||||| ||||||||    
T  9296612 ttt-tgctcatagattaccactaccttttgctccacacatctttgt---tttcattggtgtgagttttaaccggattcacaaca 9296691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 39812127 - 39812250
Alignment:
Q  39 ttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacat 136  Q
    ||||||| ||||| ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  39812127 ttgtgtggttttgctatacactagcttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacat 39812226  T
Q  137 catt-gtttatttcattggtgtga 159  Q
    | || |||||||||||||||||||    
T  39812227 ctttggtttatttcattggtgtga 39812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 19344382 - 19344243
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  ||||||| |||||| ||||||||||||    
T  19344382 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgctctcatagattaccactat 19344283  T
Q  121 cacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    | ||||||||||||||| || |||||||||||||||||||    
T  19344282 ctcttgctccacacatctttggtttatttcattggtgtga 19344243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 19349240 - 19349101
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  ||||||| |||||| ||||||||||||    
T  19349240 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgctctcatagattaccactat 19349141  T
Q  121 cacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    | ||||||||||||||| || |||||||||||||||||||    
T  19349140 ctcttgctccacacatctttggtttatttcattggtgtga 19349101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 180
Target Start/End: Complemental strand, 25403565 - 25403443
Alignment:
Q  55 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 152  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  25403565 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 25403471  T
Q  153 ggtgtgagtttcaaccggaatcacaaca 180  Q
    ||||||||||||||||||| ||||||||    
T  25403470 ggtgtgagtttcaaccggattcacaaca 25403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 180
Target Start/End: Complemental strand, 25398427 - 25398305
Alignment:
Q  55 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 152  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  25398427 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 25398333  T
Q  153 ggtgtgagtttcaaccggaatcacaaca 180  Q
    |||||||||||||||| || ||||||||    
T  25398332 ggtgtgagtttcaaccagattcacaaca 25398305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 34132 - 34211
Alignment:
Q  81 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  34132 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 34211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 351 - 528
Alignment:
Q  4 ctttcttgcttatcttgtttatgcttg-ttagctctttgtgtgcttttgttatacactagtctagggctggtttt-gttgtt--tgcttggaaaccattt 99  Q
    |||||| ||||||||||||| |||||  ||| ||||||||||| ||||| |   ||||||| |||||||| |||| ||||||  ||||||||||||||||    
T  351 ctttctagcttatcttgttt-tgctttattatctctttgtgtggttttgctcctcactagtttagggctgttttttgttgttgttgcttggaaaccattt 449  T
Q  100 gttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacag 181  Q
     | ||||| ||||||||||||| ||||||||||||||| ||||   |||||||||||||||||| ||  ||| |||||||||    
T  450 ttgctcatagattaccactatctcttgctccacacatctttgt---tttcattggtgtgagttttaaatggattcacaacag 528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 19288 - 19428
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  19288 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 19387  T
Q  121 cacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  19388 cacttgctccacacatcattgatttattctcattggtgtga 19428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 14497 - 14573
Alignment:
Q  85 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  14497 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 14573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 149079 - 149219
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| | ||||    
T  149079 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 149178  T
Q  121 cacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  149179 cacttgctccacacatcattgatttattctcattggtgtga 149219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 2374 - 2514
Alignment:
Q  23 tatgcttgttagctctttgtgtgcttttgttatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactat 120  Q
    ||||||||||||||||| ||||| ||||| |||||| ||| ||  ||||| |||  ||||||| |||||||  |||||||  ||||| ||||| |  |||    
T  2374 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatggattatctttat 2473  T
Q  121 cacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  2474 cacttgctccacacatcattgatttattctcattggtgtga 2514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 13233 - 13171
Alignment:
Q  98 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 159  Q
    |||||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||    
T  13233 ttgttctcattgattatcactatcacttgctccacatatctttggtttatttcattggtgtga 13171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 24208 - 24331
Alignment:
Q  55 tacactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 151  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   |||    
T  24208 tacactagtctagggctggtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---cat 24302  T
Q  152 tggtgtgagtttcaaccggaatcacaaca 180  Q
    |||||||||||| ||||||| ||||||||    
T  24303 tggtgtgagttttaaccggattcacaaca 24331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 44174 - 44247
Alignment:
Q  105 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 180  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  44174 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 44247  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 182152 - 182228
Alignment:
Q  85 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 159  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  182152 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 182228  T

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