View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3797_high_2 (Length: 610)
Name: NF3797_high_2
Description: NF3797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3797_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 5 - 589
Target Start/End: Complemental strand, 50373111 - 50372531
Alignment:
| Q |
5 |
acgtttactttgtttctttggaacaagaggtttagctttgaaaatcaccaccccaggggttctgctttatctgttttctttgattacgctttatgaagct |
104 |
Q |
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| T |
50373111 |
acgtttactttgtttctttggaacaagaggtttagctttgaaaatcaccaccccaggggttctgctttaaccgttttctttgattacgctttatgaagct |
50373012 |
T |
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| Q |
105 |
gttacttttgctgattctgttcacttgaataaataaattgtgtatacatatatataatctttttcgatgaataaataaattgtgtttgtatcaaaggtca |
204 |
Q |
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| T |
50373011 |
gttacttttgctgattctgttcacttgaataaataaattgtgtatacatatatataatctttttcgatgaataaataaattgtgtttgtatcaaaggtca |
50372912 |
T |
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| Q |
205 |
ttgacacatttacttgtagcaattgcattttaaaaagttacattctgcaacatttttattgagaatagcttaagttgttctcgtttatgcactaggctaa |
304 |
Q |
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| T |
50372911 |
ttgacacatttacttgtagcaattgcattttaaaaagttacattctgcaacatttttattgagaatagcttaagttgttctcgtttatgctctaggctaa |
50372812 |
T |
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| Q |
305 |
tttaataatatttgaattttaagcacatttgaaccttattctgaaaaccagccagactgtattactaggattttataacgggacggtcaaatgaatttgt |
404 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50372811 |
ttt---aatatttgaattttaagcacatttgaaccttattctgaaaaccagccagactgtattactaggattttataacgggacggtcaaatgaatttgt |
50372715 |
T |
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| Q |
405 |
ttcctcttgttatagttcctgctttctattctattattatcatttttctttattctaattcaatttgaatgctctgtttcttccttagctcagttgatat |
504 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50372714 |
ttcctcttgttatagttcccgctttctattctattattatcatttttc-ttattctaattcaatttgaatgctctgtttcttccttagctcagttgatat |
50372616 |
T |
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| Q |
505 |
tggttatatttgcaggaatttggaaggtcaaagttttggttcataaaaattacagtgcaatggaaattgaaggaaatgtaagagg |
589 |
Q |
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| T |
50372615 |
tggttatatttgcaggaatttggaaggtcaaagttttggttcataaaaattacagtgcaaaggaaattgaaggaaatgtaagagg |
50372531 |
T |
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