View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3797_low_1 (Length: 1056)
Name: NF3797_low_1
Description: NF3797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3797_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 913; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 913; E-Value: 0
Query Start/End: Original strand, 5 - 1039
Target Start/End: Complemental strand, 44110325 - 44109293
Alignment:
| Q |
5 |
tgtccaagaatataaactagtataaattgattcagttcatgaaatgcaaaccccataaattattgttgaaggaagctatttaacttaaccgcgccttatt |
104 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44110325 |
tgtccaataatataaactagtataaattgattcagttcatgaaatgcaaaccccataaattattgttgaaggaagctatttaacttaaccgcgccttatt |
44110226 |
T |
|
| Q |
105 |
aaagttagacaagaaaattcaattcctactnnnnnnnntatttacttaaactgaatgtctcatcttctcatgtctgcaagttgattcttgacatccgcca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44110225 |
aaagttagacaagaaaattcaattcctactaaaaaaa-tatttacttaaactgaatgtctcatcttctcatgtctgcaagttgattcttgacatccgcca |
44110127 |
T |
|
| Q |
205 |
ggttcttcaaaggcacaccatgtggtaaaaatggcgaacaggtaatctcgatctgctttaaaactcttgcattgtgtaaaataaactcaacgaaactgat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44110126 |
ggttcttcaaaggcacaccatgtggtaaaaatggcgaacaggtaatctcgatcagctttaaaactcttgcattttgtaaaataaactcaacgaaactgat |
44110027 |
T |
|
| Q |
305 |
tgaactataatatccatgaaagtctgaaatctgaagcatcttgagagaagatttgaaacaataaggcactggaattaatgcatagtctctcttatcgacg |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
44110026 |
tgaactataatatccatgaaagtctgaaatctgaagcatcttgagagaagatttgaaacaataaggccctggaattaatgcatagtctctcttatcgacg |
44109927 |
T |
|
| Q |
405 |
attttgccaattccctaaataagaatcaattaacaagttagcggatagaagtaatatcactgttttaacatttaaatgaggcagattaggcaggatataa |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44109926 |
attttgccaattccctaaataagaatcaattaacaagttagcggatagaagtaatatcactgttttaacatttaaatgaggcagattaagcaggatataa |
44109827 |
T |
|
| Q |
505 |
ggcgtaccagaggaacaacaagagtttccagtttaggacaccttaagaggaattccagtattgtttttctagtgaaaggtttaatcctccgatgcagaca |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
44109826 |
ggcgtaccagaggaacaacaagagtttccagtttaggacaccttaagaggaattccagtactgtttttatagtgaaaggtttaatcctccgatgcagaca |
44109727 |
T |
|
| Q |
605 |
aagatgtgtcaaattgtggaactcgggaaggagatggagatgatcaattgcatagaaaggatactnnnnnnnntgtaacagaaatagatttgcatgggaa |
704 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||| |
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|
| T |
44109726 |
aagatgtgtcaaattgtggaactcgggaaggagatggagatgatcaattgcatagagaggatcct-aaaaaaatgaaacagaaatagatttgcatgggaa |
44109628 |
T |
|
| Q |
705 |
acacaactaaaggcaacattgcgcatcaatacgcattatattatacacaatatttaaaaagataaatgatgatgatcagataaaagataatacatacctt |
804 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44109627 |
acacaactaaaggcaacattgcgcatcaatacacattatattatacacaatatttaaaaagataaatgatgatgatcagataaaagataatacatacctt |
44109528 |
T |
|
| Q |
805 |
caaagcgttcgctgatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataaggagaaacatgccataacatgttgatacagatc |
904 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
44109527 |
caaagcgtttgctgatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataaggagaaacatgccataacaggttgatacagatc |
44109428 |
T |
|
| Q |
905 |
cacattgatgttttgcattctgtacagttattacaaaaatccaaatcactttcatccaactttgtgagacatatagctttgaagaggcaaattatttctt |
1004 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
44109427 |
cacattgatgttttgcattctgtacagttattacaaaaattcaaatcactttcatccaactttgagagacatatagctttgaagaggcaaattatttctt |
44109328 |
T |
|
| Q |
1005 |
gagatgctgacagttattaccaacctccaactatt |
1039 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
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|
| T |
44109327 |
gagatgcagacagttattaccaacctccaactatt |
44109293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 281 - 802
Target Start/End: Complemental strand, 40276975 - 40276437
Alignment:
| Q |
281 |
taaaataaactcaacgaaactgattgaactata---------atatccatgaaagtctgaaatctgaagcatcttgagagaaga--tttgaaacaataag |
369 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| |||||||||||| | |||||| ||||| |||||||||||||| |||||||||||||| |
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|
| T |
40276975 |
taaaagaaactcaatgaaactgattgaactatatataatagaatatccatgaaaatttgaaatgtgaagtatcttgagagaagaaatttgaaacaataag |
40276876 |
T |
|
| Q |
370 |
gcactggaattaatgcatagtctctcttatcgacgattttgccaattccctaaataagaatcaattaacaagttagcggatagaagt-aatatcactgtt |
468 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| |||| |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
40276875 |
gcactggaatttatgcatagtttctcttatccacgagtttgccaattccctaaattggaatcaattaacaagttagtggatagaagtaaatatcattgtt |
40276776 |
T |
|
| Q |
469 |
ttaacatttaaatgaggcagattaggcaggata----taaggcgtaccagaggaacaacaagagtttccagtttaggacaccttaagaggaattccagta |
564 |
Q |
| |
|
|||||| | ||||||| ||||||| |||||||| ||||| ||||| |||||| |||||||| ||||| |||||||||||||||||||||||||| || |
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|
| T |
40276775 |
ttaacaatgaaatgagacagattaagcaggatataattaaggtgtacctgaggaaaaacaagagcttccaatttaggacaccttaagaggaattccatta |
40276676 |
T |
|
| Q |
565 |
ttgtttttctagtgaaaggtttaatcctccgatgcagacaaagatgtgtcaaattgtggaactcgggaaggagatggagatgatcaattgcatagaaagg |
664 |
Q |
| |
|
|||||||||| |||| ||||| | || |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |||||| ||| |
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|
| T |
40276675 |
atgtttttctactgaa---gataatctccaaatccagacaaagatgtgtcaaattgtggagctcaggaaggggatggagatgatcaattacatagagagg |
40276579 |
T |
|
| Q |
665 |
atactnnnnnnnntgtaacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacgc-----attatattatacacaatattt |
759 |
Q |
| |
|
| || | |||| |||||| |||||||||||||||| | ||||||||||||| || ||||||||| ||||||||||||||||||||| |
|
|
| T |
40276578 |
ttcctagtaaaag-gaaacaacaatagacttgcatgggaaacacagccaaaggcaacattgtgcgtcaatacgcatcttattatattatacacaatattt |
40276480 |
T |
|
| Q |
760 |
aaaaagataaatgatgatgatcagataaaagataatacatacc |
802 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||| |||||||||| |
|
|
| T |
40276479 |
aaaaagataaatgaagatgttcagaaaaaagacaatacatacc |
40276437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 329 - 660
Target Start/End: Original strand, 40450380 - 40450710
Alignment:
| Q |
329 |
tgaaatctgaagcatcttgagagaagatttgaaacaataaggcactggaattaatgcatagtctctcttatcgacgattttgccaattccctaaataaga |
428 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||| || |||| | || |||| || | ||||||||||| |
|
|
| T |
40450380 |
tgaaatgtgaagcatcttgagagaagatttgaaacaacaaggcactggaattaatgtcgagtcattcatatccaagaatttggtaactgcctaaataaga |
40450479 |
T |
|
| Q |
429 |
atcaattaacaagttagcggatagaagtaatatcactgttttaacatttaaatgaggcagattag--gcaggatataaggcgtaccagaggaacaacaag |
526 |
Q |
| |
|
|||||||||||||| | |||| ||| |||||||| || |||||| | ||||| || |||||| | ||||||||||| |||||||||| | |||||| |
|
|
| T |
40450480 |
atcaattaacaagtcaatggatggaaataatatcattgatttaacctagaaatgggggagattataagaaggatataaggtgtaccagaggtaaaacaag |
40450579 |
T |
|
| Q |
527 |
agtttccagtttaggacaccttaagaggaattccagtattgtttttctagtgaaaggtttaatcctccgatg-cagacaaagatgtgtcaaattgtggaa |
625 |
Q |
| |
|
| |||||||||||||||||||| ||| ||||||| || |||||||||| |||| | ||| |||| | | ||||||||||||||||||||||||||| |
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|
| T |
40450580 |
tgcttccagtttaggacaccttaggagaaattccattaatgtttttctactgaa---gtcaat-ctccaaagtcagacaaagatgtgtcaaattgtggaa |
40450675 |
T |
|
| Q |
626 |
ctcgggaaggagatggagatgatcaattgcataga |
660 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||| |
|
|
| T |
40450676 |
ctcaggaaggagatggagatgatcaattacataga |
40450710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 745 - 876
Target Start/End: Original strand, 40450765 - 40450897
Alignment:
| Q |
745 |
ttatacacaatatttaaaaagat-aaatgatgatgatcagataaaagataatacataccttcaaagcgttcgctgatagtgcgagagacttgacacttgc |
843 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| ||| ||||| ||||||||||| | |||| || | |||||||| ||||||||||||||||| |
|
|
| T |
40450765 |
ttatacacaatatttaaaaagattaaatgaagatgatgagagaaaaggtaatacataccctaaaagtgtcctttgatagtgtaagagacttgacacttgc |
40450864 |
T |
|
| Q |
844 |
aagtccactcaatagcacaactgaataaggaga |
876 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| |
|
|
| T |
40450865 |
aagtccactcagtagcacaaccgaataaggaga |
40450897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 921 - 990
Target Start/End: Complemental strand, 43760320 - 43760251
Alignment:
| Q |
921 |
attctgtacagttattacaaaaatccaaatcactttcatccaactttgtgagacatatagctttgaagag |
990 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||| ||||||| ||| || |||||||||||||| |
|
|
| T |
43760320 |
attctgttcagttattacaaaaattcaaatcactttcatcaaactttgagaggcagatagctttgaagag |
43760251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 40450213 - 40450254
Alignment:
| Q |
168 |
cttctcatgtctgcaagttgattcttgacatccgccaggttc |
209 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
40450213 |
cttcccatgcctgcaagttggttcttgacatccgccaggttc |
40450254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 40507017 - 40507058
Alignment:
| Q |
168 |
cttctcatgtctgcaagttgattcttgacatccgccaggttc |
209 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
40507017 |
cttcccatgcctgcaagttggttcttgacatccgccaggttc |
40507058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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