View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3797_low_3 (Length: 532)
Name: NF3797_low_3
Description: NF3797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3797_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 11 - 514
Target Start/End: Original strand, 18203694 - 18204197
Alignment:
| Q |
11 |
cacagacatgtatgactaccgactacattcaatcgctttcatttttatcaatctattatcgatatccatgttacattgttgtgcccaatatttgtgtaag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18203694 |
cacagacatgtatgactaccgactacattcaatcgctttcatttttatcaatctattatcgatatccatgttacagtgttgtgcccaatatttgtgtaag |
18203793 |
T |
|
| Q |
111 |
tggttcataacttgatattcaacacacaataaacaattgaacaatcaaccataaataaagtacaaaaatatactgaagttaagatgatcaaccttgttaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18203794 |
tggttcataacttgatattcaacacacaataaacaattgaacattcaaccataaataaagtgcaaaaatatactgaagttaagatgatcaaccttgttaa |
18203893 |
T |
|
| Q |
211 |
ctctctcgaaagcacgaacaaccgcctgccaattctccggctcagtttccaaaaccttctgaaattccttcctagaaccatccctctcttcatgccaccc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
18203894 |
ctctctcgaaagcacgaacaaccgcctgccaattctccggctcagtttccaaaaccttctgaaactccttcctagaaccatccctctcttcatgccactc |
18203993 |
T |
|
| Q |
311 |
agaccgatactccttctcatcattcccactcaaccacttttccctctcactctttttctccttccacctcttcccatcatcaagcttcactgtcaaaact |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18203994 |
agaccgatactccttctcatcattcccactcaaccacttttccctctcactccttttctccctccacctcttcccatcatcaagcttcactgtcaaaact |
18204093 |
T |
|
| Q |
411 |
ttcccatgaaactcaacaccatcaaattccaccgccttcatggcagaattctccgccgtctcaccctcataaatcacaaacccaaacccagcatttctcg |
510 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18204094 |
ttcccatgaaactcaacaccgtcgaattccaccgccttcatggcagaattctccgccgtctcaccctcataaatcacaaacccaaacccagcatttctcg |
18204193 |
T |
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| Q |
511 |
aaac |
514 |
Q |
| |
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|||| |
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| T |
18204194 |
aaac |
18204197 |
T |
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