View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3797_low_4 (Length: 508)
Name: NF3797_low_4
Description: NF3797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3797_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 50373100 - 50373323
Alignment:
| Q |
1 |
caaagtaaacgtgagaatgatgagagccacaatccaatttgcagaatgatgagagaaaacagcttaactgcacactaattctactttttacggtcatcta |
100 |
Q |
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| T |
50373100 |
caaagtaaacgttagaatgatgagagccacaatccaatttgcagaatgatgagagaaaacagcttaactgcacactaattctactttttacggtcatcta |
50373199 |
T |
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| Q |
101 |
tacattttagaaagttagtggaagctaaacacttcaatccaacctaatactatgtgtgcttgctaactagcgcctaatagatagtttaatagaaaatcca |
200 |
Q |
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| T |
50373200 |
tacattttagaaagttagtggaagctaaacacttcaatccaacctaatactatgtgtgcttgccaactagcgcctaatagatagtttaatagaaaatcca |
50373299 |
T |
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| Q |
201 |
gtcgtacacattcatcgttaacca |
224 |
Q |
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| T |
50373300 |
gtcgtacacattcatcgttaacca |
50373323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 248 - 502
Target Start/End: Original strand, 50373339 - 50373585
Alignment:
| Q |
248 |
ggagttaaagaggattccaaacgaacagttcagagatataaagtccctatagaatccacaaaaaataaatgactaatttgagctggagcttggaaccact |
347 |
Q |
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| T |
50373339 |
ggagttaaagaggattccaaacgaacagttcagagatataaagtccctatagaatccacaaaaaataaatgactaatttgagctggagcttggaaccact |
50373438 |
T |
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| Q |
348 |
actatatcccaaagctgcttaagcatgtgcatgtgcatgtgcacaggagttagcttcacaatatgtgcgacatattttcacttcccaatctagctccaac |
447 |
Q |
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| T |
50373439 |
actatatcccaaagctgcttaa------------gcatgtgcacaggagttagcttcacaatatgtgcgacatattttcacttcccaatctagctccaac |
50373526 |
T |
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| Q |
448 |
aaacctattcccaacaccactcact----gtcactggtttacggctacacaggttctgc |
502 |
Q |
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| T |
50373527 |
aaacctattcccaacaccactcactgtcagtcactggtttacggctacacagggtctgc |
50373585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 48272567 - 48272529
Alignment:
| Q |
93 |
gtcatctatacattttagaaagttagtggaagctaaaca |
131 |
Q |
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| T |
48272567 |
gtcatctatacattttagaaagttagtgcaagctaaaca |
48272529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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