View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3797_low_5 (Length: 430)
Name: NF3797_low_5
Description: NF3797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3797_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 21 - 425
Target Start/End: Complemental strand, 4964983 - 4964569
Alignment:
| Q |
21 |
aacattacactaattactatttgaaaacattgtatctgatcattgacaagctaattactattgatataaaatactttaataagtaaaatgtatttcatca |
120 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4964983 |
aacattacactgattactattttaaaacattgtatctgatcattgacaagctaattactattgatataaaatactttaataagtaaaatgtatttcatca |
4964884 |
T |
|
| Q |
121 |
tagaaactcctcccttatcctttcttttttagtttttacttttgtagtnnnnnnncttaccttttaaaagactttccctaatttaaaatacacgagtgat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4964883 |
tagaaactcctcccttatcctttcttttttagtttttacttttggagtaaaaaaacttaccttttaaaagactttccctaatttaaaatacacgaatgat |
4964784 |
T |
|
| Q |
221 |
aaagt--nnnnnnnnnnctttagaagacatttaacatggtaaagtatgttaaagtatgaaatagggaagctaatgattttgttgggtcatagataaaggt |
318 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4964783 |
aaagtaaaaaaaaaaaactttagaagacatttaacatggtaaagtatgttaaagtatgaaatagggaagctaatgattttgttgggtcatagataaaggt |
4964684 |
T |
|
| Q |
319 |
ggtcaaaagttcaaacatagttgattcatggcac--------aggatttatctttcgttaaatcctatctctttctctgtgatactactactaacttctt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4964683 |
ggtcaaaagttcaaacatagttgattcatggcacaagaagataggatttatctttcgttaaatcctatctctttctctgtgatactactactaacttctt |
4964584 |
T |
|
| Q |
411 |
cactcctatgctact |
425 |
Q |
| |
|
||| ||| ||||||| |
|
|
| T |
4964583 |
cacccctgtgctact |
4964569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University