View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3797_low_6 (Length: 251)

Name: NF3797_low_6
Description: NF3797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3797_low_6
NF3797_low_6
[»] chr3 (6 HSPs)
chr3 (61-251)||(26466231-26466420)
chr3 (128-251)||(22220228-22220350)
chr3 (126-227)||(2008443-2008543)
chr3 (126-246)||(22831139-22831258)
chr3 (154-247)||(44880276-44880367)
chr3 (135-180)||(14785016-14785061)
[»] chr8 (9 HSPs)
chr8 (126-247)||(35179182-35179303)
chr8 (126-247)||(42056702-42056821)
chr8 (126-246)||(5594807-5594926)
chr8 (126-180)||(30208287-30208342)
chr8 (126-180)||(31333127-31333182)
chr8 (136-247)||(42921389-42921500)
chr8 (126-227)||(40719858-40719961)
chr8 (126-180)||(1162082-1162137)
chr8 (126-159)||(34514555-34514588)
[»] chr1 (6 HSPs)
chr1 (128-247)||(24241500-24241619)
chr1 (126-247)||(16253051-16253173)
chr1 (126-247)||(41942803-41942923)
chr1 (126-247)||(39744132-39744254)
chr1 (154-247)||(21356816-21356907)
chr1 (126-180)||(48506767-48506822)
[»] chr7 (5 HSPs)
chr7 (128-247)||(34998550-34998670)
chr7 (136-247)||(8541453-8541564)
chr7 (126-180)||(30783449-30783504)
chr7 (126-159)||(45627377-45627410)
chr7 (126-180)||(40076657-40076713)
[»] scaffold0288 (1 HSPs)
scaffold0288 (126-251)||(18015-18145)
[»] chr4 (6 HSPs)
chr4 (126-247)||(46550669-46550791)
chr4 (126-180)||(52920053-52920107)
chr4 (126-251)||(47541774-47541900)
chr4 (126-180)||(17056702-17056757)
chr4 (126-180)||(39503469-39503524)
chr4 (126-180)||(41464768-41464822)
[»] chr5 (7 HSPs)
chr5 (154-246)||(34849465-34849556)
chr5 (129-180)||(16778226-16778277)
chr5 (189-247)||(23151457-23151515)
chr5 (126-180)||(20524568-20524624)
chr5 (128-180)||(37872168-37872221)
chr5 (189-251)||(33758812-33758874)
chr5 (126-180)||(10719834-10719890)
[»] chr2 (7 HSPs)
chr2 (126-180)||(37721537-37721592)
chr2 (126-247)||(36400879-36400999)
chr2 (139-247)||(38879539-38879647)
chr2 (126-180)||(34480092-34480148)
chr2 (131-180)||(6512049-6512099)
chr2 (189-247)||(11028801-11028859)
chr2 (126-167)||(3949283-3949324)
[»] chr6 (2 HSPs)
chr6 (126-180)||(26606179-26606234)
chr6 (126-159)||(994858-994891)


Alignment Details
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 251
Target Start/End: Original strand, 26466231 - 26466420
Alignment:
Q  61 attctagccatttagaattttctttagagaaattctaatatggtcacagaacnnnnnnnnnnnnntgtttggtcacacacacataaagaagtatttttta 160  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||| |              |  ||||||||||||||||||||||||||||||||    
T  26466231 attctagccatttagaattgtcttcagagaaattctaatatggtcacaggataaaaaaaaaaaaat--ttggtcacacacacataaagaagtatttttta 26466328  T
Q  161 ataataaggagaaaattgatnnnnnnnngatga-ttgaatattttgagaagaataattttatatgtgtattcaaacattattgatttgatct 251  Q
    ||||||||||||||||||||         |  | ||||||||||| | ||||||  |||||||| ||| ||||||||||||| |||||||||    
T  26466329 ataataaggagaaaattgatataaaaaaaaacaattgaatattttaaaaagaatctttttatatatgtgttcaaacattattaatttgatct 26466420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 251
Target Start/End: Complemental strand, 22220350 - 22220228
Alignment:
Q  128 tttggtcacacacacataaagaagtattttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatgtgt 227  Q
    ||||| ||||||||||| || ||   |||||||||||||||||| ||||||||        |||||||||||||||||||||||||  |||||| |||||    
T  22220350 tttggacacacacacatgaaaaatctttttttaataataaggaggaaattgataaaaaaa-gatgattgaatattttgagaagaatctttttatgtgtgt 22220252  T
Q  228 attcaaacattattgatttgatct 251  Q
     | |||||||||||||||||||||    
T  22220251 gtacaaacattattgatttgatct 22220228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 2008543 - 2008443
Alignment:
Q  126 tgtttggtcacacacacataaagaagtatttttt-aataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatg 224  Q
    ||||||| ||||||||||||||  |||||||||| |||||||||||||||||||||        ||||||||||||||||||| |||||  |||||||||    
T  2008543 tgtttggccacacacacataaattagtatttttttaataataaggagaaaattgat--aaaaaagatgattgaatattttgaggagaatctttttatatg 2008446  T
Q  225 tgt 227  Q
    |||    
T  2008445 tgt 2008443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 22831139 - 22831258
Alignment:
Q  126 tgtttggtcacacacacataaagaagta-ttttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatg 224  Q
    ||||| |||||||||| ||||||||||| |||||||||||||||||| ||| ||||        |||||||||||||||||||||||||  || ||| ||    
T  22831139 tgtttagtcacacacatataaagaagtatttttttaataataaggaggaaagtgat--aaaaaagatgattgaatattttgagaagaatctttatatgtg 22831236  T
Q  225 tgtattcaaacattattgattt 246  Q
    ||| | |||| |||||||||||    
T  22831237 tgtgtccaaatattattgattt 22831258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 44880367 - 44880276
Alignment:
Q  154 ttttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatgtgtattcaaacattattgatttg 247  Q
    |||||||||||||||||| ||||||||        ||||| ||||||||||||| |||||  |||||| ||||| |||||||||||||||||||    
T  44880367 ttttttaataataaggaggaaattgataaaaaa--gatgactgaatattttgaggagaatcgttttatgtgtgtgttcaaacattattgatttg 44880276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 14785061 - 14785016
Alignment:
Q  135 acacacacataaagaagtattttttaataataaggagaaaattgat 180  Q
    |||||||||||||||||||||||||||||||||  || ||||||||    
T  14785061 acacacacataaagaagtattttttaataataaaaaggaaattgat 14785016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 35179303 - 35179182
Alignment:
Q  126 tgtttggtcacacacacataaagaagtatttttt-aataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatg 224  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||         || |||||||||||||||||||||  |||||||||    
T  35179303 tgtttggtcacacacgcataaagaagtatttttttaataataagaaggaaattgataaaaaaaa-attattgaatattttgagaagaatctttttatatg 35179205  T
Q  225 tgtattcaaacattattgatttg 247  Q
    ||| | |||||||||||||||||    
T  35179204 tgtgtccaaacattattgatttg 35179182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 42056821 - 42056702
Alignment:
Q  126 tgtttggtcacacacacataaagaagtattttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatgt 225  Q
    ||||||| |||| |||||||||||| |||||||||||||||||||||||||||||        |||||||||||||||| |  |||||  |||||| | |    
T  42056821 tgtttggccacatacacataaagaaatattttttaataataaggagaaaattgat--aaaaaagatgattgaatattttaaagagaatctttttatgttt 42056724  T
Q  226 gtattcaaacattattgatttg 247  Q
    || | |||||||||||||||||    
T  42056723 gtgtccaaacattattgatttg 42056702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 5594926 - 5594807
Alignment:
Q  126 tgtttggtcacacacacataaagaagtatt-ttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatg 224  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||||| ||| ||||        |||||||||||||||||||||||||  || ||| ||    
T  5594926 tgtttagtcacacacatataaagaagtatttttttaataataaggaggaaagtgat--aaaaaagatgattgaatattttgagaagaatctttatatgtg 5594829  T
Q  225 tgtattcaaacattattgattt 246  Q
    ||| | |||| |||||||||||    
T  5594828 tgtgtccaaatattattgattt 5594807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 30208342 - 30208287
Alignment:
Q  126 tgtttggtcacacacacataaagaagt-attttttaataataaggagaaaattgat 180  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  30208342 tgtttggtcacacacacataaagaagtgtttttttaataataaggaggaaattgat 30208287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 31333127 - 31333182
Alignment:
Q  126 tgtttggtcacacacacataaagaagta-ttttttaataataaggagaaaattgat 180  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  31333127 tgtttggtcacacacacataaagaaatatttttttaataataaggagaaaactgat 31333182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 247
Target Start/End: Complemental strand, 42921500 - 42921389
Alignment:
Q  136 cacacacataaagaagtatttttt--aataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatgtgtattcaa 233  Q
    ||||||||||||||||| ||||||  |||||||||||  ||||||||        ||||||||| |||||||||||||||  |||||||| ||| |||||    
T  42921500 cacacacataaagaagtgttttttttaataataaggatgaaattgataaaaaa--gatgattgattattttgagaagaatctttttatatttgtgttcaa 42921403  T
Q  234 acattattgatttg 247  Q
    |||||||| |||||    
T  42921402 acattattaatttg 42921389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 40719858 - 40719961
Alignment:
Q  126 tgtttggtcaca--cacacataaagaagtatttttt-aataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttata 222  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||||| ||||||||        ||||||||||||||||||| |||||  ||||||     
T  40719858 tgtttggtcacatacacacataaagaagtattttttaaataataaggaggaaattgat-aaaaaaagatgattgaatattttgaggagaatctttttatg 40719956  T
Q  223 tgtgt 227  Q
    |||||    
T  40719957 tgtgt 40719961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 1162082 - 1162137
Alignment:
Q  126 tgtttggtcacacacacataaagaagta-ttttttaataataaggagaaaattgat 180  Q
    ||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||    
T  1162082 tgtttggtcacacacacataaagaaatatttttttaataataaagaggaaattgat 1162137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 34514588 - 34514555
Alignment:
Q  126 tgtttggtcacacacacataaagaagtatttttt 159  Q
    |||||||||||||||||||||| |||||||||||    
T  34514588 tgtttggtcacacacacataaaaaagtatttttt 34514555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 24241619 - 24241500
Alignment:
Q  128 tttggtcacacacacataaagaagtatt--ttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatgt 225  Q
    |||||||||||||||||||| |||||||  |||||||||||||||| ||||||||        ||||||||||||||||||| |||||  |||||| |||    
T  24241619 tttggtcacacacacataaaaaagtattttttttaataataaggaggaaattgat--aaaaaagatgattgaatattttgaggagaatctttttatgtgt 24241522  T
Q  226 gtattcaaacattattgatttg 247  Q
    || | |||||||||||||||||    
T  24241521 gtgtccaaacattattgatttg 24241500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 16253173 - 16253051
Alignment:
Q  126 tgtttggtcacacacacataaagaagtat---tttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttata 222  Q
    |||||||||||||||||||||| ||  ||   ||||||||||||||||| ||||||||        ||||||||||||||||||| |||||  ||||||     
T  16253173 tgtttggtcacacacacataaaaaaaaatatttttttaataataaggaggaaattgataaaaaa--gatgattgaatattttgaggagaatctttttatg 16253076  T
Q  223 tgtgtattcaaacattattgatttg 247  Q
    ||||| | |||||||||||||||||    
T  16253075 tgtgtctccaaacattattgatttg 16253051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 41942923 - 41942803
Alignment:
Q  126 tgtttggtcacacacacataaagaagtatt-ttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatg 224  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||        ||||||||||||||| ||  |||||  |||||| |     
T  41942923 tgtttggtcatacacacataaagaagtatttttttaataataaggaggaaattgat--aaaaatgatgattgaatatttcgaagagaatctttttatgta 41942826  T
Q  225 tgtattcaaacattattgatttg 247  Q
    ||| | |||||||||||||||||    
T  41942825 tgtgtccaaacattattgatttg 41942803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 39744132 - 39744254
Alignment:
Q  126 tgtttggtcacacacacataa--agaagta-ttttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttata 222  Q
    |||||||||||||||||| ||  ||||||| |||||||||||||||||| ||| ||||         |||||||| |||| ||||||||||  |||||||    
T  39744132 tgtttggtcacacacacacaagaagaagtacttttttaataataaggaggaaaatgataaaaaaa--atgattgactattctgagaagaatctttttata 39744229  T
Q  223 tgtgtattcaaacattattgatttg 247  Q
    ||||| | |||||||||||||||||    
T  39744230 tgtgtgtccaaacattattgatttg 39744254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 21356907 - 21356816
Alignment:
Q  154 ttttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatgtgtattcaaacattattgatttg 247  Q
    |||||||||||||| ||||||||||||        ||||||||||||||||||  |||||  |||||||||||| | |||||||||||||||||    
T  21356907 ttttttaataataatgagaaaattgataaaaaa--gatgattgaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttg 21356816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 48506822 - 48506767
Alignment:
Q  126 tgtttggtcacacacacataaagaagtatt-ttttaataataaggagaaaattgat 180  Q
    |||||| ||||||||| ||||||||||||| |||||||||||||||| ||| ||||    
T  48506822 tgtttgatcacacacatataaagaagtatttttttaataataaggaggaaaatgat 48506767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 34998670 - 34998550
Alignment:
Q  128 tttggtcacacacacataaagaagta-ttttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttata--tg 224  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||         |||||||||||||||||| |||||  |||||||  ||    
T  34998670 tttggtcacacacacataaagaaatatttttttaataataaggagaaaattgataaaaata--atgattgaatattttgaggagaatctttttatatgtg 34998573  T
Q  225 tgtattcaaacattattgatttg 247  Q
    ||| | |||||||||||||||||    
T  34998572 tgtgtccaaacattattgatttg 34998550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 247
Target Start/End: Complemental strand, 8541564 - 8541453
Alignment:
Q  136 cacacacataaagaagtatttttt-aataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatgtgtattcaaa 234  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||         |||||||||||||||||| |||||  |||||  ||||| ||||||    
T  8541564 cacacacataaagaagtatttttttaataataaggaggaaattgataaaaaata-atgattgaatattttgaggagaatctttttacgtgtgtgttcaaa 8541466  T
Q  235 cattattgatttg 247  Q
    |||||||||||||    
T  8541465 cattattgatttg 8541453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 30783449 - 30783504
Alignment:
Q  126 tgtttggtcacacacacataaagaagta-ttttttaataataaggagaaaattgat 180  Q
    ||||||||||||||||||||||||| || ||||||||||| || ||| ||||||||    
T  30783449 tgtttggtcacacacacataaagaaatatttttttaataagaaagaggaaattgat 30783504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 45627377 - 45627410
Alignment:
Q  126 tgtttggtcacacacacataaagaagtatttttt 159  Q
    ||||||||||||||||||||||||| ||||||||    
T  45627377 tgtttggtcacacacacataaagaaatatttttt 45627410  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 40076657 - 40076713
Alignment:
Q  126 tgtttggtcacacacacataaagaag-tatttt-ttaataataaggagaaaattgat 180  Q
    |||||||||||||||||||||| ||  |||||| |||||||||||||| ||||||||    
T  40076657 tgtttggtcacacacacataaaaaaaatatttttttaataataaggaggaaattgat 40076713  T

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Target: scaffold0288 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 251
Target Start/End: Original strand, 18015 - 18145
Alignment:
Q  126 tgtttggtcacacacacataaagaagtatttttt-----aataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataatttta 220  Q
    ||||||||||||||||||||||||||||||||||     | | |||||||||||||| ||         |||||||||||||||||| |||||  ||||     
T  18015 tgtttggtcacacacacataaagaagtattttttttttaattgataaggagaaaattaataaaaaaagaatgattgaatattttgaggagaatctttttc 18114  T
Q  221 tatgtgtattcaaacattattgatttgatct 251  Q
    ||||||| ||||||||||||||||| |||||    
T  18115 tatgtgtgttcaaacattattgattggatct 18145  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 46550669 - 46550791
Alignment:
Q  126 tgtttggtcacacacacataaagaagta---ttttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttata 222  Q
    ||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||        ||||||||||||||| ||| |||||  ||||||     
T  46550669 tgtttggtcacacacacataaagaagtatttttttttaataataaagagaaaattgat--aaaaatgatgattgaatatttagaggagaatctttttatg 46550766  T
Q  223 tgtgtattcaaacattattgatttg 247  Q
    | ||| || ||||||||||||||||    
T  46550767 tatgtgtttaaacattattgatttg 46550791  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 52920053 - 52920107
Alignment:
Q  126 tgtttggtcacacacacataaagaagtattttttaataataaggagaaaattgat 180  Q
    ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  52920053 tgtttagtcacacatacataaagaagtattttttaataataaagagaaaattgat 52920107  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 251
Target Start/End: Original strand, 47541774 - 47541900
Alignment:
Q  126 tgtttggtcacacacacataaagaagta-ttttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataatttta--ta 222  Q
    |||||||||||||||||||||| || || ||||||||||||||| || ||||||||        ||||||||||||||||||| | |||  |||||  |     
T  47541774 tgtttggtcacacacacataaaaaaatatttttttaataataagaaggaaattgat--aaaaaagatgattgaatattttgaggaaaatctttttatgtg 47541871  T
Q  223 tgtgtattcaaacattattgatttgatct 251  Q
    ||||| | |||| ||||||||||||||||    
T  47541872 tgtgtgtccaaatattattgatttgatct 47541900  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 17056757 - 17056702
Alignment:
Q  126 tgtttggtcacacacacataaagaagta-ttttttaataataaggagaaaattgat 180  Q
    |||||||||| |||||||||||||| || |||||||||||||| ||| ||||||||    
T  17056757 tgtttggtcatacacacataaagaaatatttttttaataataaagaggaaattgat 17056702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 39503469 - 39503524
Alignment:
Q  126 tgtttggtcacacacacataaagaagta-ttttttaataataaggagaaaattgat 180  Q
    |||||| |||||||||||||||||| || |||||||||||||| ||| ||||||||    
T  39503469 tgtttgatcacacacacataaagaaatatttttttaataataaagaggaaattgat 39503524  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 41464768 - 41464822
Alignment:
Q  126 tgtttggtcacacacacataaagaagtattttttaataataaggagaaaattgat 180  Q
    |||||||||||||||||||  |||| |||||||||||||||| ||  ||||||||    
T  41464768 tgtttggtcacacacacatggagaaatattttttaataataaagaagaaattgat 41464822  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 34849556 - 34849465
Alignment:
Q  154 ttttttaataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatgtgtattcaaacattattgattt 246  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||| |||||  |||||||||||| |  |||||||||||||||    
T  34849556 ttttttaataataaggagaaaattgataaaaaaa-gatgattgaatattttgaggagaatctttttatatgtgtgtcgaaacattattgattt 34849465  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 16778277 - 16778226
Alignment:
Q  129 ttggtcacacacacataaagaagtattttttaataataaggagaaaattgat 180  Q
    ||||||| ||||||||||| || |||||||||||||||||| ||||||||||    
T  16778277 ttggtcatacacacataaaaaaatattttttaataataaggtgaaaattgat 16778226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 23151457 - 23151515
Alignment:
Q  189 gatgattgaatattttgagaagaataattttatatgtgtattcaaacattattgatttg 247  Q
    ||||||||||||||||||| |||||  |||||| ||||| | |||||||||||||||||    
T  23151457 gatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttg 23151515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 20524568 - 20524624
Alignment:
Q  126 tgtttggtcacacacacataaagaagta--ttttttaataataaggagaaaattgat 180  Q
    ||||||||||||||||||||||||| ||  |||||||||||||| ||| ||||||||    
T  20524568 tgtttggtcacacacacataaagaaatattttttttaataataaagaggaaattgat 20524624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 37872168 - 37872221
Alignment:
Q  128 tttggtcacacacacataaagaagtat-tttttaataataaggagaaaattgat 180  Q
    |||||||||||||||||||| || ||| ||||||||||||||||| ||||||||    
T  37872168 tttggtcacacacacataaaaaaatatatttttaataataaggaggaaattgat 37872221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 33758874 - 33758812
Alignment:
Q  189 gatgattgaatattttgagaagaataattttatatgtgtattcaaacattattgatttgatct 251  Q
    |||||||||||| |||||| |||||  |||||| ||||| | |||||| ||||||||||||||    
T  33758874 gatgattgaatagtttgaggagaatctttttatgtgtgtgtccaaacagtattgatttgatct 33758812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 10719890 - 10719834
Alignment:
Q  126 tgtttggtcacacacacataaagaagta--ttttttaataataaggagaaaattgat 180  Q
    |||||||||||| |||||||||||| ||  |||||||||| ||| ||||||||||||    
T  10719890 tgtttggtcacaaacacataaagaaatattttttttaatagtaaagagaaaattgat 10719834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 37721592 - 37721537
Alignment:
Q  126 tgtttggtcacacacacataaagaagta-ttttttaataataaggagaaaattgat 180  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||    
T  37721592 tgtttggtcacacacacataaagaattatttttttaataataaggaggaaattgat 37721537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 36400999 - 36400879
Alignment:
Q  126 tgtttggtcacacacacataaagaagtatttttt-aataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataatttta--ta 222  Q
    ||||||| |||||||||||||||||||||||||| |||||||  |||| |||||||        ||||||||||||||||||| |||||  |||||  |     
T  36400999 tgtttggacacacacacataaagaagtatttttttaataata--gagacaattgataaaaaa--gatgattgaatattttgaggagaatctttttatgtg 36400904  T
Q  223 tgtgtattcaaacattattgatttg 247  Q
    ||||| |||||||||||||||||||    
T  36400903 tgtgtgttcaaacattattgatttg 36400879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 38879647 - 38879539
Alignment:
Q  139 acacataaagaagtatttttt-aataataaggagaaaattgatnnnnnnnngatgattgaatattttgagaagaataattttatatgtgtattcaaacat 237  Q
    ||||||||||||||||||||| |||||| ||||||||||||||        ||||||| ||||||||||| |||||  |||||| ||||| | |||||||    
T  38879647 acacataaagaagtatttttttaataatgaggagaaaattgat-aaaaaaagatgatttaatattttgaggagaatctttttatgtgtgtgtccaaacat 38879549  T
Q  238 tattgatttg 247  Q
    |||| |||||    
T  38879548 tattaatttg 38879539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 34480092 - 34480148
Alignment:
Q  126 tgtttggtcacacacacata--aagaagtattttttaataataaggagaaaattgat 180  Q
    |||||||||||| |||||||  ||||| |||||||||||||||||||| ||||||||    
T  34480092 tgtttggtcacaaacacatataaagaaatattttttaataataaggaggaaattgat 34480148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 6512049 - 6512099
Alignment:
Q  131 ggtcacacacacataaagaagta-ttttttaataataaggagaaaattgat 180  Q
    |||||||||||||||||||| || |||||||||||||| ||| ||||||||    
T  6512049 ggtcacacacacataaagaaatatttttttaataataaagaggaaattgat 6512099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 11028859 - 11028801
Alignment:
Q  189 gatgattgaatattttgagaagaataattttatatgtgtattcaaacattattgatttg 247  Q
    |||||||||||||||| || |||||  |||||| ||||| | |||||||||||||||||    
T  11028859 gatgattgaatattttaaggagaatctttttatgtgtgtgtccaaacattattgatttg 11028801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 3949283 - 3949324
Alignment:
Q  126 tgtttggtcacacacacataaagaagtattttttaataataa 167  Q
    |||||||||||||| |||||||||  ||||||||||||||||    
T  3949283 tgtttggtcacacatacataaagagatattttttaataataa 3949324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 26606234 - 26606179
Alignment:
Q  126 tgtttggtcacacacacataaagaagtatt-ttttaataataaggagaaaattgat 180  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||  |||||||||||    
T  26606234 tgtttggtcacacacacataaacaagtatttttttaatgataaaaagaaaattgat 26606179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 994891 - 994858
Alignment:
Q  126 tgtttggtcacacacacataaagaagtatttttt 159  Q
    |||||||||||||||||||||| |||||||||||    
T  994891 tgtttggtcacacacacataaacaagtatttttt 994858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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