View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3798_high_1 (Length: 447)
Name: NF3798_high_1
Description: NF3798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3798_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 67 - 442
Target Start/End: Original strand, 41806110 - 41806484
Alignment:
| Q |
67 |
attctcttcagtgcatatagaagcccatcttacattctttctacagttaacattcctcttgttccgcgggacctataaaatcaaataacaaggagaatct |
166 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41806110 |
attctcttcagtgcttatagaagcccgtcttacattctttctacagttaacattc-tcttgttccgcgggacctataaaatcaaataacaaggagaatct |
41806208 |
T |
|
| Q |
167 |
cacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatctaactttggagagagaaaaacagtagtaagtgaaatatttagaagatttac |
266 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41806209 |
cacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatctaactttggagagaaaaaaacagtagtaagtgaaatatttagaagatttac |
41806308 |
T |
|
| Q |
267 |
ggcttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttttatctcttctggttcagaagagagaaacctaca |
366 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41806309 |
ggcttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttttatctcttctggttcagaagagagaaacctaca |
41806408 |
T |
|
| Q |
367 |
ttttgtgtttgtctaatgatcaagtgaacttgcatggtattcaaagcaactcccatcgaatgcgacctatgattct |
442 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
41806409 |
ttttgtgtttgtctaatgatcaagtgaacttgcatggtattcaaagcaactcccatcgaatgcgacctgtgattct |
41806484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 116 - 352
Target Start/End: Original strand, 41800036 - 41800270
Alignment:
| Q |
116 |
acattcctcttgttccgcgggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatc |
215 |
Q |
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||||||| ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41800036 |
acattccccttgttcttcgggacctataaaatcaaataaccaggagaatctaacaaaatcaaacacaaaccataaactgtgcaggaaaaggaaatgcaca |
41800135 |
T |
|
| Q |
216 |
taactttggagagagaaaaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatc-tttttcctgac |
314 |
Q |
| |
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| |||||||||| |||||||| |||||| |||||||||||||| ||||||||||||| || ||||| || || ||||||||| |||||||||| |
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| T |
41800136 |
tcactttggagaataaaaaacagaagtaag----atatttagaagattcacggcttgtgtttttctacctcgtttgagctcctacatcttttttcctgaa |
41800231 |
T |
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| Q |
315 |
ttttctgtgctgcttgttttatc-tcttctggttcagaa |
352 |
Q |
| |
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||||||||||| ||||||||||| |||||| |||||||| |
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| T |
41800232 |
ttttctgtgcttcttgttttatcttcttctagttcagaa |
41800270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 42034154 - 42034087
Alignment:
| Q |
354 |
agagaaacctacattttgtgtttgtctaatgatcaagtgaacttgcatggtattcaaagcaactcccat |
422 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |
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|
| T |
42034154 |
agagaaacctacatcttgtgtttgtctaatg-tcaagtgaacttgcttggcattcaaagcaactcccat |
42034087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 337
Target Start/End: Original strand, 24685192 - 24685444
Alignment:
| Q |
67 |
attctcttcagtgcatatagaagcccatcttacattctttctacagttaacattcctcttgttccgcgggacctataaaatcaaataacaaggagaatct |
166 |
Q |
| |
|
||||||||| |||| |||| || | ||||| | |||||| | || |||||||||||||||||| |||||||||||||||||||||| || ||||||| |
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| T |
24685192 |
attctcttctgtgcttataaaaccacatctcatattcttcatgcatttaacattcctcttgttcttggggacctataaaatcaaataaccagaagaatct |
24685291 |
T |
|
| Q |
167 |
cacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatctaactttggagagagaaaaacagtagtaagtgaaatatttagaagatttac |
266 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| || |||||||||||| | |
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|
| T |
24685292 |
cacaaaatcaaacacaaaccataaactgtgcaggaaaa------------------agagagagaaaaacagtggtaagtgcaacatttagaagattcgc |
24685373 |
T |
|
| Q |
267 |
ggcttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttttatc |
337 |
Q |
| |
|
||||| |||||||| |||||| || || ||||| |||||||||||| || ||| |||| || |||||||| |
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|
| T |
24685374 |
ggcttttgtttgtctacctcagtcgagctcctaggtctttttcctgaattctctctgcttctggttttatc |
24685444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 118 - 313
Target Start/End: Original strand, 24631841 - 24632035
Alignment:
| Q |
118 |
attcctcttgttccgcgggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatcta |
217 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||| || ||| |||||||| | || |||||| ||||| ||| | |
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| T |
24631841 |
attcctcttgttctttgggactaataaaatcaaataaccgggataatctcacaaaatcgaaaacagaccataaattgtgttggaaaaagaaatccatatc |
24631940 |
T |
|
| Q |
218 |
actttggagagagaaaaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctga |
313 |
Q |
| |
|
|||| | ||||| | ||||| |||||||||||||||||||||||||| ||||||| | |||| |||||||||||| |||| ||||||||||||| |
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|
| T |
24631941 |
acttggaagaga-agaaacattagtaagtgaaatatttagaagatttgtggcttgtatctgtctacctcattcaagctcctggatctttttcctga |
24632035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 24682519 - 24682594
Alignment:
| Q |
135 |
ggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaat |
210 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| |||||||||| ||||| ||||||| ||||||||||| |||| |
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| T |
24682519 |
ggacctataaaatcaaagaaccaggagaatctcataaaatcaaacgcaaacaataaactgtgcaggaaaagtaaat |
24682594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 263
Target Start/End: Original strand, 24653501 - 24653664
Alignment:
| Q |
101 |
ttctttctacagttaacattcctcttgttccgcgggacctataaaatcaaataacaaggagaatct--cacaaaatcaaacacaaaccataaactttgca |
198 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||| |||||||||| || ||||||||||||| || ||||||| |||| |
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|
| T |
24653501 |
ttcttcctacatttaacattcctctctttctttcggacctataaaatcaaagaaccaggagaatctcgcataaaatcaaacacacacaataaactgtgca |
24653600 |
T |
|
| Q |
199 |
gg--aaaaggaaatgcatctaactttggagagagaaaaacagtagtaagtgaaatatttagaagatt |
263 |
Q |
| |
|
|| ||||| |||||||| | | | |||| | || ||||||||||||||||||||||||||||||| |
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|
| T |
24653601 |
ggaaaaaagtaaatgcatatca-tatggaaaaag--aaacagtagtaagtgaaatatttagaagatt |
24653664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 214
Target Start/End: Complemental strand, 278689 - 278541
Alignment:
| Q |
67 |
attctcttcagtgcatatagaagcccatcttacattctttctacagttaacattcctcttgttccgcgggacctataaaatcaaataacaaggagaatct |
166 |
Q |
| |
|
|||||||||||||| ||||||||| || || | |||| ||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||||| | |
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|
| T |
278689 |
attctcttcagtgcttatagaagcacacctaatcatcttcctacatttaacattcctcttgttctttgggacctataatatcaaatgacaaggagaattt |
278590 |
T |
|
| Q |
167 |
cacaaaatc-aaacacaaaccataaactttgcaggaaaaggaaatgcat |
214 |
Q |
| |
|
|| |||||| ||| |||||||||||| || |||||||||||||||| |
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|
| T |
278589 |
cagaaaatcaaaatccaaaccataaaccgtggtggaaaaggaaatgcat |
278541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 352
Target Start/End: Complemental strand, 278511 - 278393
Alignment:
| Q |
236 |
cagtagtaagtgaaatatttagaagatttacgg--cttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttt |
333 |
Q |
| |
|
|||||||||| || | |||||||||||| | || ||| ||||||| | ||||||| || ||||| ||||||||||||| ||||||||||| | |||| |
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|
| T |
278511 |
cagtagtaagggagacatttagaagattcatgggccttctgtttgtta-cctcatttgagctcctagatctttttcctgaattttctgtgcttgtggttt |
278413 |
T |
|
| Q |
334 |
tat-ctcttctggttcagaa |
352 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
278412 |
tatcctcttctggttcagaa |
278393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 31044152 - 31044117
Alignment:
| Q |
18 |
aagttggtgattcaccttttcaatatatatggcatg |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31044152 |
aagttggtgattcaccttttcaatatatatggcatg |
31044117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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